Pxyl008918.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000483.1:4267304-4274299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.071 5.4 8.3 0.9 1 23 99 121 99 121 0.95 2 29 2.7 2.1e+02 3.4 0.3 2 23 150 172 149 172 0.92 3 29 0.025 1.9 9.8 2.0 2 23 192 214 191 214 0.95 4 29 0.88 67 4.9 9.8 1 23 220 243 220 243 0.94 5 29 0.079 6 8.2 3.8 1 23 248 271 248 271 0.96 6 29 1.7 1.3e+02 4.0 0.3 2 23 274 296 273 296 0.92 7 29 0.0012 0.09 13.9 0.3 1 23 354 377 354 377 0.96 8 29 0.37 28 6.1 0.1 2 23 407 429 406 429 0.96 9 29 3.1e-05 0.0024 18.9 0.7 2 23 481 503 480 503 0.96 10 29 0.03 2.3 9.5 0.5 1 23 508 531 508 531 0.96 11 29 0.023 1.7 9.9 2.0 2 23 537 559 536 559 0.94 12 29 0.0017 0.13 13.4 7.7 1 23 563 586 563 586 0.97 13 29 0.011 0.82 10.9 0.1 2 23 593 614 592 614 0.95 14 29 0.00034 0.026 15.7 1.1 1 23 620 642 620 642 0.97 15 29 0.0023 0.18 13.0 0.4 1 23 681 703 681 703 0.98 16 29 0.056 4.2 8.7 1.4 2 23 730 752 729 752 0.96 17 29 0.24 18 6.7 3.9 3 23 773 794 773 794 0.97 18 29 0.0025 0.19 12.9 5.9 2 23 800 822 799 822 0.95 19 29 0.0029 0.22 12.7 1.8 1 23 827 850 827 850 0.96 20 29 0.00061 0.046 14.9 0.9 2 22 880 900 879 900 0.94 21 29 0.58 44 5.5 0.3 1 23 945 968 945 968 0.93 22 29 0.37 28 6.1 0.1 3 23 997 1018 996 1018 0.93 23 29 0.16 12 7.2 0.4 3 23 1042 1063 1042 1063 0.90 24 29 4.9e-05 0.0037 18.3 0.6 2 23 1069 1090 1068 1091 0.94 25 29 0.0031 0.23 12.6 0.3 2 23 1097 1119 1096 1119 0.96 26 29 0.00015 0.011 16.8 0.8 2 23 1125 1147 1124 1147 0.94 27 29 0.00028 0.021 15.9 5.7 1 23 1151 1174 1151 1174 0.97 28 29 0.0098 0.75 11.1 0.7 3 23 1182 1202 1181 1202 0.96 29 29 0.0036 0.27 12.4 0.1 1 23 1208 1230 1208 1230 0.97
Sequence Information
- Coding Sequence
- ATGGCTAGAAGTGGACGCTTATTTGGTGGTGAAGATGATCATTACACCTACAACATAATAATAGAGTCAGAAGAAGAGCTCCTCTCCCTAAAGTCCGGCGACGAGGGTGTGGACGCGGCGCCGCTGGCAACACCACGGCGCGCCTCCGAGGTCAAGACAGAGAAGCGGAAACGGATCAAGAAGAAGACTGAGGATGCCGCTAGTAGCAACAAAGTCATAGGCATACAGAGGCGCAGAAATCTGCAAATATTGTTCAACAACACCTCAGTTATACCGTTCAAATGGCGCTCAAAGTTCAGCTGTTTCTATTGCGGGCTATTTCTGAACGGTTACAAAGAGTTGAGGAGACATACCGAGGCCCACGGCAGCTGTTCGCTTGAAGAAGTGACAGCGGCAACGTTGAAACTCAACTGGAGTCGCGATATTAAAGTGGATATTTCTGACCTTACCTGCCAAGTATGCAAAGACACGGCGACAAGTTTCTACGAATTGATCACGCATTTGAACGACAGGCACGATTTGTCGGTCGATCCGTCCGACCTTAAGATCGAAACGCTGAAGTTGTCAGACATGTCGTGCCACATGTGTGGACAGAAGTTTAACTACATCCGGTTCCTAATATCGCACTTGCAAAACTCACACCCTAATGAGGAAAGCCACGAGTGCGATAAATGTAATCAAAAATTCAACAGGAAGAAGGACCTGTGTTGCCACATGTCTTATTATCACCGGGAGGGGGGTTACCAGTGCAAATATTGTCCGGTCAAGTGCGATACGCTGAACAGTCTGAGATACCACAAAGCTAAATACCACTCGACTAGATGCGGCGTATGTTTTGTTAAATTTGGGTCTCCCACGCTCAAGCAGAAGCATCTAGAACTAGTTCACCCAGAGAAGGCAAAATCGGCCAAAATACCAATAGTCAAAGACGAAGACTCTAAGAGAGAGTTAAGGGAGTCGAGAGAGTCCAAACGCGGAAGGCTTTTGAGGGTCAAAACGAACATTTGCGACATAATAAACATGTCTAACGCTACCCCTTTCAGTTACTACAAGAATAAGTTCAATTGTTTCTACTGTCCCGAAGATTTTATCGATCCGGAAACGTTGAGAGATCACACGCAAAGCAACCATACAGTCTGCGATCTCAACACGAAATATATCAAGAAAAACTGCACATGTTTGACAAATGTTTGTGTAAAACTGGACATACTACACTTAAGGTGCCGATTGTGCCAAATACCGTTAACAGACTTCGATAGCTTGCTCGACCATTTGACGACTGTCCACGACGTCACTTTCGAATCCATGCTGAAATCGTGCCTCCAACCTTACAAGCTTGTTAAAGACCACATGGAATGCCCGTACTGTCCCGGAGAGGTCTTCCGTTTCTTCAACATCTTGGCTAAACACGTCAACTCTTCGCACACAAATAATAATATAGTCTGTTCGTACTGCGGTCTGACTTTCGCCAAAGAGACGCACTTGAGGGTCCACATACGCAACAACCATCGGCAAGGCATGTTCAGATGTCCCATTTGTGATGCCGAATGCAATATACAGTCAAGACTCTTCTCTCATCTGGCTAAAGTACATGGGAAAAAAGCGTTGCGTTGTCTGAAGTGTGGAGAACGATTCGAGACCCACTACTTGAAGCAGAGACATTTACTGAACGTCCATAATATGGGACACAAATGCCCTCACTGCGAAAGAGTTTTCCACAGGAATTCCTACATGAAAGACCACGTGAGAAGGTTCCATTTGAAGGAGAAAAAGGTGCCTTGCTCAGCGTGTGATATGAAATTCTTCAGCCCGATTGACTTGCGGAGTCACATGGTGAAACATACGGGCGAGAAAAACTTCCATTGTGACATATGCGGGGAACGGTTCATGTATAAGAAGGGCTTGGTCAGACATATTGGACGACATAATAAGAACGCTAGTTCGAATACGAGCAAGTCGTTCTATATGATGAAGAGGCGAAAGAACCTGCAAATCATATTTGACAGTTCCACCATCATACCCTTTAAATGGAGGGCCAACTATATCTGTTTTTACTGCGGCATCAGAATAGTCGATTACAAAGAGCTGAGGAGACACACAGAAACCCACGGTAGCGTTGCCGATTGCGACCTCAAGTCTATCAAGGGCTATGGTGATATGAACATCAAAATTGACATCTCAAACATTACGTGCAAACTTTGCAATGTCTTATTCAGGTCATTCAACGAACTCACGGAGCATTTGTGCTCGGCTCACCAAGTGAAATACGAAGTTATGGATGTGGTTATCGAGCAGTATCGTCTGTTGGATCTGGGTTGCCATCTCTGCCCGGACTCTTTCAGCTACTTCGGGCATTTAGTGTCTCACATGAACCACGCTCATCCGAATAAAACCCTCATTTGCAATCAATGCAACCACAGGTTTAGCAAACGCAGTGAGTTGTATCGTCATATCAAGAATTGTCACAAAGTAGGCGGGTACCAGTGTGATATGTGTCCGCATAAATTTAACACTTTGAGCATACTGAAGAAGCATCAGTCGAATGCTCACCGTTGTGAGGTCTGTCATTTACAGCTGCCATCAGCTGCGCAGAAGCAGAAACACTGCCAGTTGGAGCATCCAGAGTCCTACGCTTTACAATGCCGCGATTGCAACAAAATATTCAAAAAGAAGCTAGGCCTAAGAGTGCACATGAAAAAGTGTAACGCAGCTGATACCGACAGAAAACAAAAGTTAACAGTAAAACGTCACAAACTCGACAAAGTCAAAGATGACATTATAAATGTGATCATCTTGTCCACATCCATACCTTTTAACTTCACCAATAATAAGTTCAATTGCTTCTACTGCGCCGATGACTTCATTGACTCTGATAGTTTGAGGGAACACACGCTTCTAAGCCACGCAAATTGTGACGCCAATTATATCAAGAAGAATTGCAAAACGATCGGCAACGTGTGCGTTAAACTCGATACCTCATACGTCGCTTGCAAGCTCTGCTACGAATCTCTTAGGGACCTGGACGCTTTGATCGAGCATTTGGCCCAAAAGCACGACACTCAAATCGAGCCTATAGTCAAGACGTGTCTGCAGCCGTACCGACTGATCAAAGACAACATGGGATGCCCGTACTGCCCTGCCGTTTTCCAATTCTTCAATTTACTGATGCATCACGTCAGTGTGACTCATTCGAACAACAACGTCGTCTGTGTATACTGCGGTTTAACCTTCGGGAATGAGAACCAATTGCGAGCGCATACTCGCACGCATCACAGCGACGGCCAATTGAAATGCGGCACGTGCGGTGCCGTGTGCGACTCTCGATCCCGATTGGCCAATCACATGGCGACGGCGCACGGCGTCAAAGCCGTCAAATGCACCACGTGTGGCGAACGATTCTCCTCGCAATATCTGAGACAGAAACACATGATGGACGTGCACAAATTCGGCCACAAATGTAACTATTGCGGGAAGGAATTCGTGAGACATTCCTTCATGAAAATCCACGTAAGACGAACGCATCTGAAGGAGAAACGCGTGGCTTGTCCCGTTTGCGATATGAAGTTCTTCAACGGAGTACAATTAAAGCATCATTTGGTGAAACATGGCGGGAAAAAGAACTTCCAATGTGATGAGTGTGGGGAGAGCTTTATGTGGAGGAAAGGGCTTGTGAGGCACATAGGCAGGCACAGCAAGAACCCGTTTAGCTTCCCCGCAGTGCCGAAGACTAATAATGCCCAAGCCCAGGCTATAGCGTATAATAAGCAAGCCAATACTGCGCAAGTCCCATACACTCCGCAAATGCCGAAGGCCAACAGTGTAGTCCAGGGTCCTTATAACCCGCTTCCGATCGGCTTCCCTTTTAGATTCTAA
- Protein Sequence
- MARSGRLFGGEDDHYTYNIIIESEEELLSLKSGDEGVDAAPLATPRRASEVKTEKRKRIKKKTEDAASSNKVIGIQRRRNLQILFNNTSVIPFKWRSKFSCFYCGLFLNGYKELRRHTEAHGSCSLEEVTAATLKLNWSRDIKVDISDLTCQVCKDTATSFYELITHLNDRHDLSVDPSDLKIETLKLSDMSCHMCGQKFNYIRFLISHLQNSHPNEESHECDKCNQKFNRKKDLCCHMSYYHREGGYQCKYCPVKCDTLNSLRYHKAKYHSTRCGVCFVKFGSPTLKQKHLELVHPEKAKSAKIPIVKDEDSKRELRESRESKRGRLLRVKTNICDIINMSNATPFSYYKNKFNCFYCPEDFIDPETLRDHTQSNHTVCDLNTKYIKKNCTCLTNVCVKLDILHLRCRLCQIPLTDFDSLLDHLTTVHDVTFESMLKSCLQPYKLVKDHMECPYCPGEVFRFFNILAKHVNSSHTNNNIVCSYCGLTFAKETHLRVHIRNNHRQGMFRCPICDAECNIQSRLFSHLAKVHGKKALRCLKCGERFETHYLKQRHLLNVHNMGHKCPHCERVFHRNSYMKDHVRRFHLKEKKVPCSACDMKFFSPIDLRSHMVKHTGEKNFHCDICGERFMYKKGLVRHIGRHNKNASSNTSKSFYMMKRRKNLQIIFDSSTIIPFKWRANYICFYCGIRIVDYKELRRHTETHGSVADCDLKSIKGYGDMNIKIDISNITCKLCNVLFRSFNELTEHLCSAHQVKYEVMDVVIEQYRLLDLGCHLCPDSFSYFGHLVSHMNHAHPNKTLICNQCNHRFSKRSELYRHIKNCHKVGGYQCDMCPHKFNTLSILKKHQSNAHRCEVCHLQLPSAAQKQKHCQLEHPESYALQCRDCNKIFKKKLGLRVHMKKCNAADTDRKQKLTVKRHKLDKVKDDIINVIILSTSIPFNFTNNKFNCFYCADDFIDSDSLREHTLLSHANCDANYIKKNCKTIGNVCVKLDTSYVACKLCYESLRDLDALIEHLAQKHDTQIEPIVKTCLQPYRLIKDNMGCPYCPAVFQFFNLLMHHVSVTHSNNNVVCVYCGLTFGNENQLRAHTRTHHSDGQLKCGTCGAVCDSRSRLANHMATAHGVKAVKCTTCGERFSSQYLRQKHMMDVHKFGHKCNYCGKEFVRHSFMKIHVRRTHLKEKRVACPVCDMKFFNGVQLKHHLVKHGGKKNFQCDECGESFMWRKGLVRHIGRHSKNPFSFPAVPKTNNAQAQAIAYNKQANTAQVPYTPQMPKANSVVQGPYNPLPIGFPFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -