Pxyl025432.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- drm
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000522.1:4013990-4016323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.5e-06 0.00027 21.9 2.3 1 23 8 31 8 31 0.95 2 21 0.00054 0.041 15.0 0.3 2 23 37 59 36 59 0.96 3 21 6.5e-05 0.0049 17.9 0.2 2 23 68 90 68 90 0.97 4 21 7.2e-06 0.00055 20.9 1.3 2 23 97 119 96 119 0.95 5 21 0.00011 0.0085 17.2 0.6 2 23 127 149 126 149 0.94 6 21 0.00028 0.021 15.9 8.3 2 23 158 180 157 180 0.96 7 21 0.0001 0.0077 17.3 6.0 1 23 186 209 186 209 0.98 8 21 0.00017 0.013 16.6 1.6 1 23 240 263 240 263 0.97 9 21 8.6e-05 0.0065 17.5 2.8 1 23 292 315 292 315 0.96 10 21 10 7.6e+02 1.6 2.2 2 21 323 342 322 343 0.90 11 21 0.017 1.3 10.3 1.2 3 23 353 374 352 374 0.95 12 21 0.0014 0.11 13.7 5.4 1 23 399 422 399 422 0.96 13 21 2.8e-05 0.0022 19.0 0.5 2 23 429 451 428 451 0.95 14 21 6.2e-05 0.0047 18.0 2.3 2 23 458 480 457 480 0.92 15 21 0.0081 0.61 11.3 2.2 1 23 486 509 486 509 0.97 16 21 0.066 5.1 8.4 4.1 2 23 517 539 517 539 0.95 17 21 0.00023 0.017 16.2 3.7 1 23 546 569 546 569 0.97 18 21 0.037 2.8 9.2 1.3 1 22 576 597 576 599 0.89 19 21 0.041 3.1 9.1 2.8 5 23 616 635 613 635 0.90 20 21 3.9 2.9e+02 2.9 0.4 3 12 657 666 656 669 0.90 21 21 5.2 3.9e+02 2.5 2.3 1 11 687 697 687 700 0.90
Sequence Information
- Coding Sequence
- ATGGCGCAGCACACAGCAGACTTCATTTGTGACTACTGCGACCGCGGTTTCACCAGGAAATACAACTTACGAATACACATAGAGAACTGTCACCTAAACACCGTCACCTCTTGCGGGGTCTGCAACCAATCCTTCGGCAGCACCAGCGGCCTCCAACAACACCTGAACAGAGGCCACAATAGGAACCATCAGGGCTTCCCCGAATGCGACCTTTGTGGACGCATCTTCAAAAGGAAACAAAACATCGTTTCCCATATGATAACCATCCATTTACAAGGGTCTGAAATAAGATGCCTCATCTGCTTGAAAACGTTTACCACGCAACGAAATCTGAAAAGGCATATCAATCAGTTACACAATCCAGATTTCGAGTATTTAGAGTGCGATGACTGTAGCAAGATCTTTAAGGGGAAACATTCGCTGATAAATCACATTCAGGCGATGCATAACCCGGCTAATAAACAGAACTGTACGTGTCATGTTTGTGATAGGACGTATACTAACACGCGCAATCTGAAGCGTCATATCGAGACGTGTCATGGGGAAAGAGGGGAGTATAAGTGCTGCTTCTGCACCAAGGTATACACGTCCAATCAAAGCCTGCGTCGACATCAGAGGATCAGACACAATCCGAAGATAACCAACGTGAAATCTATTCCTTTGGAAGTTTTGAATGGGGTCTATGATGAAGACGTGGTAAAGAATCATAACAATGGCTACCAGTGCAGGAAATGTAAGAAGACTTTTTACAGTGAACCGGTGTTACGGCAACACATGAAGCTAGCGCATTCTTTTAGCTCCTTCTACAAATACTGCAGGTCTGTGTTACTCAAACAGGAGACTCTGAAGCTAGAGACTCAAGCGAACAAGTTTTACAACTGCGAGTTCTGTAACTATGTCTTCAGTAACGTTTACGAGTTGAAGAACCATATGCACTCGAATCACGATGTAGAATACTGCCTTTCAACTTGCAATGTCTGTTTCAATAAGTTCTACAGCAAAGAAACTGCTTGTGAACACAAGAAAATCTGTCTTCCGCCCGCAGACGCCAACGCTTGCAGTCATTGTGACAAACTCTTCACTGATGTGTCCAGTCTTCAGTTCCATGCCAGGATCTTCCATCCACAATCCCAGATAACAGATCAGGACGTCACATCGACCAATACTGAGGACGTGGCTGCAGAGAGCTCGGTGTACAACTGCCCGCATTGCCAGCGCGTGTACTACAGCGATCGCTCGCTGAAGCATCACATGAAGCTAAAGCATTCCGAAGGCGAAGCCGTTGAGTGTCCCATTTGCGGGAAAATCTGTAGTAACAAGTACTATCTGGCATCGCATACTAAGCTAGTTCACGAAGAGCAATTGTTCTCGAAATGCGAATATTGCGATAAACAGTTTAAGTCGAGGAGGAACGTGCGCAGACATATTGAATTCACGCATTTAGGCATGCAAAGATATAAGTGCATTGAGTGTGAGACACTTTTCAAAGAGAAGCGAAGTCTCCGCAAGCACGTTAGGACGAAGCATTCGGATTCTAAATCGTTTCCTCAGTGCCATATCTGCGAGAAAAGATTCGAGTCGGCCAAGTCTTGTAAGATCCATCTGAAGTTGGTACATTCCTTCAATTTGAACACGCATCCGTGTCACAAGTGCTCGGTCTCTTTCACGTCTTACGAGTCTCTCAGAGTCCACCTGCAAACCAACCATTTGGCAGAAGAGGAGATTTACAAGTGTGAGGAATGCAACCTAGTGTTTGAAGGCCACGAAAAGTTTGAGAACCACAACGAGTTGTATCACGTGAGCCTTGTCTCCAAGATTAAACAGAAGATTTTGCCGCGATGCATTCTGTGTATGAAGGATTTCAGCACAAGGAAGACTTTGAAGCGGCACATTAAGAAATTCCACACGGAGTTTGACCCAGACGAGCTAGCTACCTTCGGGTCTAGACGACGAATCTTCACAGTCGATTGCGAGCATTGCGTGAAGAAATTCACCGATGACGCATACGTCAGTATCTACCAAAAGTTGAGGCGCGTTAACTCGAGAGACTCGCCGGTCTTCAAATGCGAGTTTTGTGGCTGTTCGTACAGCGTTCTAGAGTTTTCCATACAGAACTACCGTTTGCAAAGCGCCGATGGCGTCACTAAGACGATTCTGAGTGAACTATGCACTACGGAGATGAGTGAGGGAGAGAGTGAGGATAGAAAGGGAGGGTTTAGGTTGCTAGATGATAGTATGATGGAACCAGAGAGCACAACGACTGAAATCAAGAAGGAAGTCATAGACAACTATTCTGATATGATGAGTATTAAAATGGAACCTGTTTCACCGTGA
- Protein Sequence
- MAQHTADFICDYCDRGFTRKYNLRIHIENCHLNTVTSCGVCNQSFGSTSGLQQHLNRGHNRNHQGFPECDLCGRIFKRKQNIVSHMITIHLQGSEIRCLICLKTFTTQRNLKRHINQLHNPDFEYLECDDCSKIFKGKHSLINHIQAMHNPANKQNCTCHVCDRTYTNTRNLKRHIETCHGERGEYKCCFCTKVYTSNQSLRRHQRIRHNPKITNVKSIPLEVLNGVYDEDVVKNHNNGYQCRKCKKTFYSEPVLRQHMKLAHSFSSFYKYCRSVLLKQETLKLETQANKFYNCEFCNYVFSNVYELKNHMHSNHDVEYCLSTCNVCFNKFYSKETACEHKKICLPPADANACSHCDKLFTDVSSLQFHARIFHPQSQITDQDVTSTNTEDVAAESSVYNCPHCQRVYYSDRSLKHHMKLKHSEGEAVECPICGKICSNKYYLASHTKLVHEEQLFSKCEYCDKQFKSRRNVRRHIEFTHLGMQRYKCIECETLFKEKRSLRKHVRTKHSDSKSFPQCHICEKRFESAKSCKIHLKLVHSFNLNTHPCHKCSVSFTSYESLRVHLQTNHLAEEEIYKCEECNLVFEGHEKFENHNELYHVSLVSKIKQKILPRCILCMKDFSTRKTLKRHIKKFHTEFDPDELATFGSRRRIFTVDCEHCVKKFTDDAYVSIYQKLRRVNSRDSPVFKCEFCGCSYSVLEFSIQNYRLQSADGVTKTILSELCTTEMSEGESEDRKGGFRLLDDSMMEPESTTTEIKKEVIDNYSDMMSIKMEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -