Pxyl008921.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000483.1:4293210-4299186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.0028 0.21 12.8 2.8 1 23 47 69 47 69 0.97 2 39 0.015 1.2 10.4 0.6 2 23 97 119 96 119 0.90 3 39 0.074 5.6 8.3 0.2 2 23 140 162 139 162 0.95 4 39 0.011 0.83 10.9 4.1 1 23 167 190 167 190 0.95 5 39 0.00012 0.0095 17.0 0.4 1 23 195 218 195 218 0.97 6 39 0.08 6.1 8.2 2.6 1 23 306 329 306 329 0.92 7 39 0.039 3 9.2 0.1 2 23 357 379 356 379 0.95 8 39 1.3 1e+02 4.3 0.2 3 23 403 425 402 425 0.85 9 39 0.00071 0.054 14.6 0.1 1 23 430 453 430 453 0.97 10 39 5.4 4.1e+02 2.4 1.1 1 23 501 523 501 523 0.87 11 39 2 1.5e+02 3.8 0.3 3 23 544 565 542 565 0.90 12 39 0.021 1.6 10.0 2.4 2 23 586 608 585 608 0.94 13 39 0.47 35 5.8 0.6 1 23 613 636 613 636 0.91 14 39 0.83 63 5.0 0.8 2 23 667 689 666 689 0.85 15 39 0.013 0.96 10.7 1.5 3 21 694 712 692 713 0.94 16 39 0.12 8.8 7.7 0.5 1 23 768 791 768 791 0.93 17 39 0.28 21 6.5 0.3 2 23 819 841 818 841 0.93 18 39 0.22 17 6.8 0.0 3 23 865 886 863 886 0.94 19 39 0.00024 0.018 16.1 0.3 3 23 893 914 891 914 0.95 20 39 0.044 3.4 9.0 2.7 1 23 945 968 945 968 0.94 21 39 0.0001 0.0079 17.3 4.3 1 23 972 995 972 995 0.97 22 39 0.00088 0.067 14.3 1.0 2 23 1002 1023 1001 1023 0.96 23 39 0.024 1.8 9.8 0.7 1 23 1029 1051 1029 1051 0.96 24 39 4.1 3.1e+02 2.8 0.6 3 23 1107 1126 1105 1126 0.83 25 39 0.44 34 5.8 0.1 2 21 1154 1173 1153 1176 0.87 26 39 0.086 6.5 8.1 0.1 2 23 1197 1219 1196 1219 0.94 27 39 2.9e-05 0.0022 19.0 2.0 2 23 1225 1247 1224 1247 0.95 28 39 0.0064 0.49 11.6 0.7 1 21 1252 1272 1252 1275 0.90 29 39 0.094 7.2 8.0 2.4 1 23 1277 1300 1277 1300 0.95 30 39 0.0099 0.75 11.0 1.3 2 20 1307 1325 1306 1327 0.92 31 39 0.094 7.1 8.0 1.5 1 19 1375 1393 1375 1398 0.93 32 39 0.37 28 6.1 0.1 2 23 1426 1448 1425 1448 0.96 33 39 0.064 4.8 8.5 0.2 1 23 1470 1495 1470 1495 0.97 34 39 0.00078 0.059 14.5 4.1 3 23 1502 1522 1500 1523 0.93 35 39 0.0016 0.12 13.6 0.8 1 23 1528 1551 1528 1551 0.96 36 39 0.0035 0.27 12.5 0.1 2 23 1557 1579 1556 1579 0.96 37 39 0.00015 0.011 16.8 4.2 2 23 1584 1606 1583 1606 0.97 38 39 0.0013 0.095 13.9 0.4 2 23 1613 1634 1612 1634 0.96 39 39 0.03 2.2 9.6 1.6 1 23 1640 1662 1640 1662 0.96
Sequence Information
- Coding Sequence
- ATGAAGAGAATTACAGAACGAAATCATTTCTTTTCAGACGACATGGGTCGAGTAGAGTCGGCCTCCACGCGTAGGCGGCGGAACTTGCTCCATATATTCAACAATACATCGCTTATCCCCTTCAAGTGGCGGGGAAAGTTCATATGCTATTTTTGCGAGGAGAGGTTCAAAGACAGTAAACTGTTGCGCAAACATTCCAAGTCGCATCCGCCGGTCAAACTGAAAGATAAGGCGCTGCACTCACAGCGAAAGTGCAATATCGAAGTGAAGTTAGACGTTTCAGAGATCACATGCGAGATTTGCAACGAGAGTTTTAACACCCTCGATGAGATCGTCCACCATTTGACTTTTAAACACAATCTCGAGTACGACAAGTCGGTCGAATCGCCGATAGAGCCGTATCGGCTAATCGACTTAAAATGTCTAGTCTGCGGATTCGCCGGTAGAAATTTCATCAATCTAGTGACCCATATGAACAACAGTCACCCGCATAATAGTCACCCGTGCGAGCATTGCGGTCAAATGTTCAACAAACTTCGCGATCTGGACACGCACAAGCGAAACTTTCATAAAGAGGGAGGCTATCCGTGCGAGATATGCAATAAAAACTTCCCAACTAACCAGAGGTTGCGGGTCCATACGAATAAAGCTCATTTGTCGTCTTGTGAAATCTGCTGCAAACAATTCTCCACTATAGAGATAAAGAACAGACATTTTATTTCCGCCCATGCGGATATATTCAAAGGAATAAAGTCTGAGTATCCTAGGTATGATATGATAGACGAAGGAGACCTTCTAGAAATGAACCATCAGGACCTCAATCAGAGGAAAGAGAAGGGGGCTAGGAATCGCGCTAATATATCCGTTATACTCAACATGTCCACGGCTATACCGTTTAAGTACTTCAAAAATCAGTACCTCTGTTTTTATTGTTCGAAGTATTTCACCGACTGCGAGCTGATGAAAGAGCACATTGTTAGTTCGCACGTAGCGTACAACACTAAACAGAAAGTTACGAAAGCGCTCAAAGGTTCAGATGTGTGTATTAAGATTGACATTTCGAATTTAACTTGTAAAGTCTGCTTTGAAAGTTTCGACGGATTAGAGTCCCTGATAGATCATTTGATTGTGAAACATAACGCTCCGTACGATAAAAATGTCACAGGCATAATGCAGCCTTTTAAACTAAAACGGGATAACATGGCATGCCCAGTCTGTAACGCTGACAACTTTAGCTATTTCGGCACTTTACTTAGACATATGAACAAGAACCACGCTAGTCATAACTTCATTTGTGATAACTGCGGAGAGGCTTTCGGCAGCACTCTGCTTCTCAAAGCCCACATGAATAGGCTGCATAGCGATAAGGAATACAAGTGTGAAATATGCGATGTAACTCAGCCAGATAAGGACTTTCTATACACTTCAGAGAAGAGAAGAAATAATCTGGAAATATTGTTCAGGAATACGAGTGTAATACCCTTCAGATGGCGCGAAGGATTCAAGTGTTTTTACTGTGGCCAGCTCGAGCCCGGCTACGGTGAATTTAGGAAGCACACGAAATCGCACGACATTAAACGGCTATCCACTATAAAAGCTAACGTGAAAATAGATGTCTCTAAAATTTGTTGCGAGATTTGCGACCACACTTCTGAAAGCGTAGAAGATTTAGGTGCTCATTTGGCAGAAAGCCATCAGTTGACGTACAGGAAAGATGTGGAGAATTTCTTAGAAATGTATAATTTGGATAACATGAGCTGTCCGAAATGCAATGAAGCGTGCAAGACTTTCCGAAGTCTGCGGCTGCATATTAGCAATACGCATGCTCAGATCACCTATAACTGTGAAGTCTGTGCCGAAAAGTTCTACCGGAATAGAGACTTGGCATTCCATGTCAAAAATTCGCACCGCCAAGGCGGTTATTCTTGTAGACTCTGCTCCCAACAATTCTTAACCAACAGCAAACTTAGTTTCCACACAAAAGATAGACATATAACATCCTGCCATATTTGCTTCGAGAGTTTCCCTACGCCAGAAATCAAAAGAACCCACATAAAAGACGAACATAAAAATCAGAACTGCCCGACTTGTCACAAAACCTTTCTGTCCAAATACGGTATGCAAAAGCACATGCAAAGCTGCGTAAAAACTGAATGTGTAAAAAAAGAACAAACACCTAACGTGTTAATAAAAAAAGAAAACGAACCGGTGCCGAAGACGTCATCGAGAAAGATTAGGGAAAATATAGCGTGCGTCTTAAATATGTCCACTGCAGTACCTTTTAAATACTACATGAACCGTTTCAGATGCTTTTACTGTCCGAAAGACTTTATAGACTTTGAAATCCTTAGAGAACACACAGTAACAGATCATCCTGTTTGTGATACGGATGAGAGAGGCCTGCGATTGTGCCGAGGCAAAGAGGTCAACGTCAAATTAGACATAACGTCTTTATCTTGCAAGGCGTGTTCGGAAAAGTTTACCGAACTTGACAAATTAATAGACCATCTCATAAACAAACACGAAGGCAGTTACGATAAGACAATCAAAAACGTTTTGTTTCCTTACAAGCTTATTAAAGACAACATGGCTTGTCCGGCGTGCCCAGCCGTGTTTAGATACTTCGGAAAGCTGTTGACGCATCTGAACGAAGTCCACACGGACAACAATATAATCTGCATGTACTGTGGCCAAGCTTTCAGAAGCCAACCAAACTACCGCTCGCACATATCCAGATACCACAAGGAAAACTTCAAATGCTTCTGCGGCGACCAATTCGAGAACCTGATGAAGCTGCGGACGCACAAAAACAAAATACACAAACAGAAATCTTTCAAATGCCAACAGTGCAATGAGTGTTTCGACACGATATACCAGAGGCTTCGTCATTTGGTGTCTGTCCACAATTCCGGACACAAATGCACTTATTGCGAGAAGATATTCACTCGGAATTCGTTTATGAATGACCACATTCGCCGCAGTCATTTGAAGGAGAAGAATGTTGAGTGTTCAGTGTGCGGCGAGAGGTTCTTTGGGAATACTCATTTGAAGATGCACATGGTTAAACATATCGGCGAAAGAAACTATCATTGTGATGTTTGCGGGAAAGCGTTTTTGTGGAAAAAGAATCTGAGGGGACACATGGCGTCTCATAATAAACGGGCTATCATGGTACATTTTACAGAAGAGCGTTTGTTTTCAGATGAAGACGGGAAGAGAACGCACAGCAATAACCCATCAAAAAGACGAAGGCGCAATCTGGAAATATTATTCAACAACACGACAGTTATACCGTTTAAATGGCGAGGCAAATACCTCTGCTACTATTGCGTGCAAGAGGTGGAGCTATCCGACCTGAAAAAGCACACGAAATCCCACGGGAACTGCTCGAGCAAGGACTTCGCCATAAAACAAGTGAAGGCGGGCGACAGGGAAATCAAATTGGACGTCTCTGACATATCCTGCGAGATTTGCAACGAGCAGTTTCCCAATTTAGACGAGATTCTCATGCATTTAGTGTTCAAACATCAGCTGGAGTACGATAGAGATGTTGACCTGTTGTTCACTGCGTACAAACTGTCGGACCTGACGTGTCTAGCTTGTGGGGAGAGCTTCAAAATCTTCAAAGACCTCGCCGCCCACGTCAACAAAAATCATCCGCAGAGCACGCTAGTCTGTGACCAATGCTCAAAGAGTTTCACTAAAAAGAGAGACTTGAAAATACACATGAAAAACTTCCATAAAGACGGCGGCTACAGATGTGATGAATGCGGTGAGGAATTCCACTCCAACTGGAAACTAATAACGCACAATGAGGCAAAGCATTTCCACACTTGCAATGTTTGCATGAAAAAGTTCTCGTCACAACAGAAGAAGATAAAACACATAGAGGTAGAACATCTAAGCGAAGAGGTGTTAACGTGTGGCTTTTGCAACAAGTCGTACACGACTAAAAAGTCGTTTTTGACGCACACAATCAAATGCACGACGAGTAAGGAAGCCGAGGAAGAGCCGACGGCAAAGTCGCCAGCAACCGAATATAAAGTGAAGAAAATTAGGAACAATATAGCGTGCATTGTGAATATGTCGACAGCGCTACCGTTCAAATACTTTATGAACCGCTTCAGATGTTTCTACTGTCCGAAGGATTTTGTGGAGTCGGATGATATGAAAGAGCATTGTGTTATGGAGCATCCGGTCTGTGATATCAAACACAGAAGCATGCGTCTTAGGGGTCTCCACAATATTTACATTAAACTCGACATAACCTCTCTAACTTGTAAAGTGTGCTTTGAATCCATGCCGGACTTAGACACGTTAGTCAACCATTTAATCACAGAACACAAGGCTGCGTACGACAAAACGGTAGACAATAGAATACAAGCGTTTAGGCTCATGAAAGACAATTATCCGTGCCCGTATTGCCCGCAAAAAGAACCGTTTAGATACTTCGGGCAAGTCCTAAAACACATGAACAAAGTTCACTCAAACAATAATCTAATTTGCATGTTTTGCGGTACATCCTTCCGTACGGATTCGCATCTGCGCTCGCATATATCGCGGCACCACAGACAGGAGGGCCACAAATGTAACGACTGTGACATGGAGTTCCCGACAAAGCTGCGGCTAGTCACACATATGGCCAAAATCCACGGGACGAATCTGGTGAAATGCCCTGAATGTCCGGAGAAATTTCCAAGCACATACGAGCGGCAGAAGCATCTGATTTCCGCACACAATTGCGGGTCGACCTGCAAATACTGCGGTAGGATGTTCACTAGAAACTCTTTCATGCATGATCACATTCGCCGGACGCATTTGCGGGAGAAAAAAGTCGAGTGCACGATTTGCAACATGAGGTTCTTTGACAATGTCATGCTGAAAATGCATATGGTGAAGCATGTGGGTGATAGAAACTTCCATTGTGATATCTGCGGCAAAAAGTTTTTGTGGAAAAAGAATTTGAGAGGCCACATGGCGTCCCATGACAAGCATAATAACGTGCACAATAATGAAATTCTACATATTTAG
- Protein Sequence
- MKRITERNHFFSDDMGRVESASTRRRRNLLHIFNNTSLIPFKWRGKFICYFCEERFKDSKLLRKHSKSHPPVKLKDKALHSQRKCNIEVKLDVSEITCEICNESFNTLDEIVHHLTFKHNLEYDKSVESPIEPYRLIDLKCLVCGFAGRNFINLVTHMNNSHPHNSHPCEHCGQMFNKLRDLDTHKRNFHKEGGYPCEICNKNFPTNQRLRVHTNKAHLSSCEICCKQFSTIEIKNRHFISAHADIFKGIKSEYPRYDMIDEGDLLEMNHQDLNQRKEKGARNRANISVILNMSTAIPFKYFKNQYLCFYCSKYFTDCELMKEHIVSSHVAYNTKQKVTKALKGSDVCIKIDISNLTCKVCFESFDGLESLIDHLIVKHNAPYDKNVTGIMQPFKLKRDNMACPVCNADNFSYFGTLLRHMNKNHASHNFICDNCGEAFGSTLLLKAHMNRLHSDKEYKCEICDVTQPDKDFLYTSEKRRNNLEILFRNTSVIPFRWREGFKCFYCGQLEPGYGEFRKHTKSHDIKRLSTIKANVKIDVSKICCEICDHTSESVEDLGAHLAESHQLTYRKDVENFLEMYNLDNMSCPKCNEACKTFRSLRLHISNTHAQITYNCEVCAEKFYRNRDLAFHVKNSHRQGGYSCRLCSQQFLTNSKLSFHTKDRHITSCHICFESFPTPEIKRTHIKDEHKNQNCPTCHKTFLSKYGMQKHMQSCVKTECVKKEQTPNVLIKKENEPVPKTSSRKIRENIACVLNMSTAVPFKYYMNRFRCFYCPKDFIDFEILREHTVTDHPVCDTDERGLRLCRGKEVNVKLDITSLSCKACSEKFTELDKLIDHLINKHEGSYDKTIKNVLFPYKLIKDNMACPACPAVFRYFGKLLTHLNEVHTDNNIICMYCGQAFRSQPNYRSHISRYHKENFKCFCGDQFENLMKLRTHKNKIHKQKSFKCQQCNECFDTIYQRLRHLVSVHNSGHKCTYCEKIFTRNSFMNDHIRRSHLKEKNVECSVCGERFFGNTHLKMHMVKHIGERNYHCDVCGKAFLWKKNLRGHMASHNKRAIMVHFTEERLFSDEDGKRTHSNNPSKRRRRNLEILFNNTTVIPFKWRGKYLCYYCVQEVELSDLKKHTKSHGNCSSKDFAIKQVKAGDREIKLDVSDISCEICNEQFPNLDEILMHLVFKHQLEYDRDVDLLFTAYKLSDLTCLACGESFKIFKDLAAHVNKNHPQSTLVCDQCSKSFTKKRDLKIHMKNFHKDGGYRCDECGEEFHSNWKLITHNEAKHFHTCNVCMKKFSSQQKKIKHIEVEHLSEEVLTCGFCNKSYTTKKSFLTHTIKCTTSKEAEEEPTAKSPATEYKVKKIRNNIACIVNMSTALPFKYFMNRFRCFYCPKDFVESDDMKEHCVMEHPVCDIKHRSMRLRGLHNIYIKLDITSLTCKVCFESMPDLDTLVNHLITEHKAAYDKTVDNRIQAFRLMKDNYPCPYCPQKEPFRYFGQVLKHMNKVHSNNNLICMFCGTSFRTDSHLRSHISRHHRQEGHKCNDCDMEFPTKLRLVTHMAKIHGTNLVKCPECPEKFPSTYERQKHLISAHNCGSTCKYCGRMFTRNSFMHDHIRRTHLREKKVECTICNMRFFDNVMLKMHMVKHVGDRNFHCDICGKKFLWKKNLRGHMASHDKHNNVHNNEILHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -