Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000246.1:629814-654157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.6e-05 0.0012 19.8 1.3 1 23 418 440 418 440 0.96

2 20 0.0034 0.25 12.5 0.6 1 20 446 465 446 468 0.94

3 20 3.3e-05 0.0025 18.8 4.6 1 23 489 511 489 511 0.98

4 20 0.00021 0.016 16.3 4.7 1 23 517 539 517 539 0.99

5 20 4.1e-05 0.0031 18.5 5.3 1 23 545 567 545 567 0.97

6 20 8.9e-06 0.00068 20.6 7.1 1 23 573 595 573 595 0.97

7 20 1.5e-06 0.00012 23.0 1.0 1 23 601 623 601 623 0.97

8 20 0.00011 0.0086 17.2 6.7 1 23 629 651 629 651 0.97

9 20 0.00011 0.0085 17.2 6.5 1 23 657 679 657 679 0.97

10 20 5.4e-07 4.1e-05 24.4 1.9 1 23 685 707 685 707 0.98

11 20 1.1e-05 0.00082 20.4 7.7 1 23 713 735 713 735 0.98

12 20 1.3e-05 0.00098 20.1 7.3 1 23 741 763 741 763 0.98

13 20 2e-05 0.0015 19.5 4.0 1 23 769 791 769 791 0.96

14 20 7.7e-06 0.00059 20.8 7.2 1 23 797 819 797 819 0.98

15 20 5.6e-05 0.0043 18.1 6.1 1 23 825 847 825 847 0.97

16 20 1.1e-06 8e-05 23.5 6.0 1 23 853 875 853 875 0.98

17 20 1.9e-05 0.0014 19.6 8.0 1 23 881 903 881 903 0.97

18 20 1.8e-06 0.00013 22.8 2.8 1 23 909 931 909 931 0.97

19 20 0.00071 0.054 14.6 0.5 1 23 938 960 938 960 0.97

20 20 0.005 0.38 12.0 5.9 1 23 970 992 970 992 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.6e-05	0.0012	19.8	1.3	1	23	418	440	418	440	0.96
2	20	0.0034	0.25	12.5	0.6	1	20	446	465	446	468	0.94
3	20	3.3e-05	0.0025	18.8	4.6	1	23	489	511	489	511	0.98
4	20	0.00021	0.016	16.3	4.7	1	23	517	539	517	539	0.99
5	20	4.1e-05	0.0031	18.5	5.3	1	23	545	567	545	567	0.97
6	20	8.9e-06	0.00068	20.6	7.1	1	23	573	595	573	595	0.97
7	20	1.5e-06	0.00012	23.0	1.0	1	23	601	623	601	623	0.97
8	20	0.00011	0.0086	17.2	6.7	1	23	629	651	629	651	0.97
9	20	0.00011	0.0085	17.2	6.5	1	23	657	679	657	679	0.97
10	20	5.4e-07	4.1e-05	24.4	1.9	1	23	685	707	685	707	0.98
11	20	1.1e-05	0.00082	20.4	7.7	1	23	713	735	713	735	0.98
12	20	1.3e-05	0.00098	20.1	7.3	1	23	741	763	741	763	0.98
13	20	2e-05	0.0015	19.5	4.0	1	23	769	791	769	791	0.96
14	20	7.7e-06	0.00059	20.8	7.2	1	23	797	819	797	819	0.98
15	20	5.6e-05	0.0043	18.1	6.1	1	23	825	847	825	847	0.97
16	20	1.1e-06	8e-05	23.5	6.0	1	23	853	875	853	875	0.98
17	20	1.9e-05	0.0014	19.6	8.0	1	23	881	903	881	903	0.97
18	20	1.8e-06	0.00013	22.8	2.8	1	23	909	931	909	931	0.97
19	20	0.00071	0.054	14.6	0.5	1	23	938	960	938	960	0.97
20	20	0.005	0.38	12.0	5.9	1	23	970	992	970	992	0.99

Sequence Information

Coding Sequence: ATGAATCAGGAGCACCATAACTTGAATACGGGTGGCGGCCAGCCGCCTGGGAGCGCCGAGGGCGCGGCGCAGCAGCGGGCGCAGGCGGCGGGGCAGCCGGCGGCGGCGCTGGCGCCCACCACGTCCGCCACCGACCTGCGGGTCAACTCGGCCGCCGTGAACGTGGCCCTGTCCAGCGTCGCCAAGTACTGGGTGTTCACCAACCTGTTCCCGGGGCCCATCCCGCAGGTCTCCGTGTACGGGCTGCCCGCCGGCGCCAGAATCGAGAATGGGAAGCCTGTACAGGATGCTCTAGGCCAACATGCCAGCATACTGAATGGGGACCCCAACATAATCCTAGGCCACCATGCGGGCGGCCAGTCTCAAGTGACAGTGTCGGGGCCGGGCGGCCAGCAGATACCCGTCACGCAGATCATCGCCTCCCAACCTGGACAGACACATGAAACCCTGGTAGCACACAGTCAGCAGCAGGAGCTGGCGGGCTCCAGCGCGGGCGGCTCGGTGACCACGTCCCTTCAGCAGGTACCCACCAACCGGGTCGAATTTGTACAACACCATAACATAGAGATGGTAAATCACGTGGGGCACCACTCGCAGCAGCACATCCTGCAGCAGCAGCAGCTGCTGCGGCCCGACCAGGCCAACCAGCAGATCCAGCTGACAGTCTCCGAGGACGGCATCGTGACGGTGGTGGAGCCGGGCGGCGGCGGCGGCGGCAAGCTCTTGGACAAGGAGCTGCACGACATCAAGATGCCGGCGGACCACGCGCTCACCGTGCACCAGCTGCAGCAGATCGTGGGACAGCAGGTAATAGACAGCGTAGTCCGCATAGAGCAAGCGACAGGGGAACCAGCCAACATCCTGGTGACTCACAACGCGGACGGGACCACCTCCATCGAGGCGAGCCCCGCGGCCGACGCGCCGGTGAAGGACGAGAAGGCGAAGGAGGCGCATTTTGCGATACCTGCCGATGTCAAGGATATTAAAGGCGCTATTGATTTGAAGTCCGTAGGCGGGATGTCAATGGAGGGCGCGGTAGTGAAGATCTCGGGCGGCGACGAGCTGCACGGCATGTACAAGGTGAACGTGGAGGACCTGTCGCAGCTGCTGGCGTACCACGAGGTGTTCGGGAAGCTGCACGCCGACGCCGCGCCCGCCGCCGCCGCCGGGAAGCAGTCAAGCGGGCAGCAGCAGATAGTGGAGATCGAGGTGGACGGCGCGGCGGCGCTGGACGACTCGGCGCCGGGCCACCACGCCTGCGACATCTGCGGCAAGGTGTTCCAGTACCGCTACCAGCTCATCGTACACAGGCGGTACCACGGCGAGAGGAAGCCCTACACGTGCCAGGTGTGCGGCTCCGCCTTCGCCAACCCCGTCGAGCTGTCGCGGCACGGGAAGTGCCATGTCGCGGGCGCGACGGCGGAGGACGCGCGCGGCGCCAAGCGGCTGTCGACAGACAAGCCGTACGCCTGCACCACGTGCCACAAGACCTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGCGAGACGCCCTACAGATGCCAGTTCTGCGCGAAGACGTTCACCCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGGGAGACGCCGCACCATTGTCAGATTTGCGGCAAGAAATACACTAGGAAGGAGCACCTGGCCAACCACATGCGCTCGCACTCGAACGACTCGCCGTACGCCTGCGAGCTGTGCGGCAAGGCCTTCACGAGGAAGGAGCACTTCACCAACCACATCCTGTGGCACACCGGTGAGACGCCGCACCGATGCGACTTCTGCTCAAAAACGTTCACCCGTAAGGAGCACCTGCTAAACCACGTCCGTCAACATACAGGTGAATCCCCGCACCGCTGCAACTTCTGCTCCAAGAGCTTCACGCGGCGCGAGCACCTCGTGAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGGTACTGTCCGAAAGCGTTTACGAGGAAGGATCATCTCGTGAACCACGTCAGGCAACACACAGGGGAGTCCCCGCACAAGTGTTCCTACTGCACCAAGTCGTTCACACGCAAGGAGCACCTCACCAACCACGTGCGTCAACACACGGGGGAGTCGCCGCACCGCTGCAGTTATTGCAGCAAAAGCTTTACCAGGAAGGAGCATCTGAATAATCACGTCAGACAGCACACGGGCGAGACGCCGCACGCCTGCTCGTTCTGCCCCAAGGCGTTCTCGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGGGACATGCCGCACCGCTGCAACTACTGCAGCAAGAGCTTCAGCCGCAAGGAGCATCTGAACAATCATGTCAGACAACACACAGGCGAAACCCCGTTCAAGTGCACGTACTGTGCCAAGTCGTTCTCCCGCAAGGAGCACCTCACCAACCATGTGCATCTACACACCGGGGAGACCCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCTCGAGGAAGGAGCACTTGACCAACCATATAAGGATCCACACGGGCGAGTCGCCGCACCGCTGCGAGTTCTGCCAGAAGACGTTCACACGCAAGGAGCACCTCACCAACCACATGAAGCAGCACACGGGCGACACGCCGCACATGTGCAAGGTCTGCTCCAAGCCCTTCACGCGCAAGGAGCATCTCATCGCACACATGAGGGCGCACAGCTGCGGCGAGCGGCCGTACAGCTGCGGGCAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTCATGTTCCACGAGCGCTCGCACTACAAGAGCGGCGGCGGCGCGCGCCCCTTCAAGTGCGAAGTGTGCTCGAAGACGTTTATGTGTAAAGGTCATCTGAGCGCGCACCGGCGCACGCACGAGGGCGGCGCGGCGGAGGGCGCGGACGAGGAGTGCGGCGCCGCCTGCGCCAAGTGCGAGCCCGAGCCGCGGCCCGACGACGCGGACAGAAATTCAACGGAGAGCAAGGCGGAGGTGGCGGCCGTGGTGGCGCAGACGCAGGCCGCGCAGAGCAACGGCACCGTCATGCAGATCACCAGCCAGCAGGTGGTCCGAGCAGCGGTGGCGACGAGCGGCGCGGACACGGGAGTCCCCTCGTACACGCACCACCCCGTCACGGTCAACTACTAG
Protein Sequence: MNQEHHNLNTGGGQPPGSAEGAAQQRAQAAGQPAAALAPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDALGQHASILNGDPNIILGHHAGGQSQVTVSGPGGQQIPVTQIIASQPGQTHETLVAHSQQQELAGSSAGGSVTTSLQQVPTNRVEFVQHHNIEMVNHVGHHSQQHILQQQQLLRPDQANQQIQLTVSEDGIVTVVEPGGGGGGKLLDKELHDIKMPADHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNADGTTSIEASPAADAPVKDEKAKEAHFAIPADVKDIKGAIDLKSVGGMSMEGAVVKISGGDELHGMYKVNVEDLSQLLAYHEVFGKLHADAAPAAAAGKQSSGQQQIVEIEVDGAAALDDSAPGHHACDICGKVFQYRYQLIVHRRYHGERKPYTCQVCGSAFANPVELSRHGKCHVAGATAEDARGAKRLSTDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHSNDSPYACELCGKAFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSYCSKSFTRKEHLNNHVRQHTGETPHACSFCPKAFSRKEHLTNHVRQHTGDMPHRCNYCSKSFSRKEHLNNHVRQHTGETPFKCTYCAKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHIRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDTPHMCKVCSKPFTRKEHLIAHMRAHSCGERPYSCGQCGKSFPLKGNLMFHERSHYKSGGGARPFKCEVCSKTFMCKGHLSAHRRTHEGGAAEGADEECGAACAKCEPEPRPDDADRNSTESKAEVAAVVAQTQAAQSNGTVMQITSQQVVRAAVATSGADTGVPSYTHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -