Basic Information

Gene Symbol
nfxl1
Assembly
GCA_950381575.1
Location
OX494452.1:11014210-11016681[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 3e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 16 0.014 2.1e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 16 3.1e-07 0.0046 17.7 15.9 3 19 186 202 185 202 0.95
4 16 2 3e+04 -5.5 1.2 6 10 227 231 227 231 0.69
5 16 4.4e-08 0.00065 20.4 12.7 3 19 239 255 237 255 0.92
6 16 0.67 1e+04 -2.6 1.8 6 10 280 284 279 284 0.90
7 16 2.5e-09 3.8e-05 24.3 12.8 1 19 290 308 290 308 0.99
8 16 6.1e-06 0.091 13.5 18.6 3 19 345 361 337 361 0.86
9 16 0.00033 4.9 8.0 20.3 1 18 395 412 395 413 0.97
10 16 3.2e-10 4.7e-06 27.2 13.9 1 19 422 440 422 440 0.99
11 16 0.0002 3 8.6 6.4 9 19 488 498 486 498 0.89
12 16 0.0043 64 4.4 6.9 1 12 508 518 508 518 0.90
13 16 0.35 5.1e+03 -1.7 3.6 14 18 547 551 547 552 0.87
14 16 9.1e-06 0.13 13.0 5.3 1 11 588 598 588 599 0.97
15 16 1.5e-05 0.23 12.2 13.1 3 18 629 645 628 646 0.88
16 16 1.4e-05 0.21 12.3 11.3 1 18 687 705 687 706 0.86

Sequence Information

Coding Sequence
aTGGCACGTAGATATAGAGATGCTGCTGCGAAACTGCAGCAAAATGTTCAGAAACATTTACAAGGGATGAAGGAGCTATCATCGTCTGAAGACGAAGAACCATGCGAGTCCAGCGTCTTAGATGGAGTCTTCCAGAGCTACTGGCGCGGTGGCGGAGACACTCACATGCTAAACAGAACTAAAAACCTACTAGAGGAGGCGATAAGTGGCCGCGCCGTAACTTGTCTTATATGCATAGGATCAATCAAAAGAACGAACGCTAtatggacttgcgatcattgtTACTCCTATTTTCATCTATCCTGCATACAAAAATGGTCAAACGACAGCATCAGCTTACGAAGTGAAGAAACCCAGGGTCCAATAACTGTATATAAACCACAAAAAATTGAATGGTGCTGCCCTAAGTGCCGGCATTCGTATTCTAAGGAAGAAATACCGCGAAAATACCGTTGTTTTTGTGGAAAAACTGATGATCCACAATACCACCCATGGTTAATTCCACATACTTGTGGAGAAGTTTGTGAAAAAAGACTGTCTACTAGTGATAACTGTAAACATAAATGTTTGCTGTTATGCCATCCTGGTCCATGCCCGCCTTGCCCTCAGACTGTTAATGGAATATGTTTTTGTGAAAAGGAACATAAGAGAGTAAGATGCAGTGCTGCTAGATGGTCTTGTGGACAACTTTGTAAGAAAACTCTATTGTGTAAGACTCACAAATGTGAAAATGTTTGTCATGAAGGTGACTGTCCAGAATGTAGTTACACCAGTGTTCAGTCATGTCAGTGTGGAGCTGAGAAAGCTAAAAGACCCTGCAGTGATTTGTTTTGGCAGTGCCAGAAGCTGTGTGGCAAACTATTTGCTTGTGGTTACCATAAATGTGAGAGAAGCTGTCATTCTGGTGATTGTGGAGCCTGTCCTAACTCAGGCATGACATCATGTCCTTGTGGGGCCAACCAACGCTATGTACAATGCCCAGATATTATGGAAACCTGCTTAGGTACATGTGGTAAACTGCATGAAGATTGTGAGCATAACTGTCCAGAAAAATGCCATAAAGGAAAATGTCCTCCTTGCCAAGTCTTGATACAGAAAAAATGCCAGTGCTCAACCCATACTAGATCTTTGCCATGTAGTAAAGAGTTTAAATGTGACACTAAATGTAGAGGAATAAGACTCTGTGGTAAACATGGGTGTGGTAGAAAATGTTGCAATGGAACCTGTCCTCCCTGTGAGAAAATTTGTGATAAAGGCCTCCAATGTGGTAGACATAAATGCACCAGTATATGCCACCGCGGGCCCTGCTATCCTTGCCCTAGGGAATCAAAGGTGACCTGCAGATGCAAAGAAACATATGTAACAGTTCCGTGTGGCAGAGAGAGACAGACTAAACCTCCAAAATGTAATTTACCttgcaaaattaaatacaaatgtgGGCACAGTGAGGAAAATAAGCATTCCTGTCATTTTGGTGACTGTCCACCATGCAAAGCCATATGTTGCAAATCATATCTTAAGTGTAGTCACCAATGTAAAGCAGTGTGTCATGAATATGTAGCAGTGCTCTTTAAGCAGGTGGAGAAGCCAGCTACTCCTTGGGAAGTTCAACCTCCAAAGACTAAAATCATGACATTAGATTGTCCGCCCTGTGACACACCCATACCAACTATCTGCTTTGGTGAACATGAGACTGACAGCCAGCCATGCAGCTCAGCTGCACGCAGGCCTTGTGGCAGAGAATGCGGGCGTCCATTATCCTGTGGTAACCATAAGTGCACTTTGCTGTGCCACCTCTATAGCCCTCACCCTGAGTATCCAAATGTTCCTTCTACTTGCAGGCAGTGTGACAGAGAATGCTTAGTTCCTCGTCCTTCTAAATGTATGCACAAATGTTCTATCAGAGCCTGTCACCCAGGTCCCTGTCCTCCATGTGATATATTGGAACGATTAGCTTGTCACTGTGGCATAACTGAAATTTACTTGCGATGCCGGGAAATATCTGGGGCTACTAAGGAGGTTCTTTCATGCAAGCAACAGTGCCCTAAGAACTTGGAATGTGGCCATCGATGCCGCAACTCATGCCATCCAGGAGCCTGCAACAACCAAGTGTGCACTAAGAAAACCAAAATTCACTGTCCATGTGGTAACTTGAAAAGGGAAGCACCTTGCAATGCTGTTCGGCAGGGTGATGCAAAAATACTATGTGATGAAACATGTGAAGCTAAAAAGTTTGCTATGAAGATACAAAATGAGAAAGAACAGCAGAGATTGAAGGAGTTGGAGGAAGAGAAGAATCGCAAAGAATTGGCTGAATATGAGTGGAAACTGAGTggtaagaaaaagaaatataaggaaaaaaaaacagtcatcaATAAGGATGACAGAGGATTCTTGAGGAAATATTCAGTACCAATTATGTCATTCCTAGTAATGTTGCTTGCTGctttttactacattatttatttgtaa
Protein Sequence
MARRYRDAAAKLQQNVQKHLQGMKELSSSEDEEPCESSVLDGVFQSYWRGGGDTHMLNRTKNLLEEAISGRAVTCLICIGSIKRTNAIWTCDHCYSYFHLSCIQKWSNDSISLRSEETQGPITVYKPQKIEWCCPKCRHSYSKEEIPRKYRCFCGKTDDPQYHPWLIPHTCGEVCEKRLSTSDNCKHKCLLLCHPGPCPPCPQTVNGICFCEKEHKRVRCSAARWSCGQLCKKTLLCKTHKCENVCHEGDCPECSYTSVQSCQCGAEKAKRPCSDLFWQCQKLCGKLFACGYHKCERSCHSGDCGACPNSGMTSCPCGANQRYVQCPDIMETCLGTCGKLHEDCEHNCPEKCHKGKCPPCQVLIQKKCQCSTHTRSLPCSKEFKCDTKCRGIRLCGKHGCGRKCCNGTCPPCEKICDKGLQCGRHKCTSICHRGPCYPCPRESKVTCRCKETYVTVPCGRERQTKPPKCNLPCKIKYKCGHSEENKHSCHFGDCPPCKAICCKSYLKCSHQCKAVCHEYVAVLFKQVEKPATPWEVQPPKTKIMTLDCPPCDTPIPTICFGEHETDSQPCSSAARRPCGRECGRPLSCGNHKCTLLCHLYSPHPEYPNVPSTCRQCDRECLVPRPSKCMHKCSIRACHPGPCPPCDILERLACHCGITEIYLRCREISGATKEVLSCKQQCPKNLECGHRCRNSCHPGACNNQVCTKKTKIHCPCGNLKREAPCNAVRQGDAKILCDETCEAKKFAMKIQNEKEQQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKTVINKDDRGFLRKYSVPIMSFLVMLLAAFYYIIYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932106;
90% Identity
iTF_00327543;
80% Identity
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