Basic Information

Insect: Plusia festucae
Gene Symbol: ush
Assembly: GCA_950381575.1
Location: OX494434.1:14476841-14480504[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0043 0.36 12.1 0.2 1 20 122 141 122 143 0.95

2 9 9.2e-05 0.0078 17.3 0.9 1 23 181 203 181 203 0.98

3 9 0.057 4.9 8.5 0.6 3 21 234 252 233 253 0.92

4 9 0.021 1.7 9.9 3.9 2 21 493 512 492 513 0.95

5 9 0.0072 0.61 11.4 0.2 3 20 542 559 540 561 0.91

6 9 4.4 3.8e+02 2.6 0.0 2 23 589 610 588 610 0.93

7 9 0.009 0.76 11.0 1.3 1 23 616 638 616 638 0.99

8 9 0.47 40 5.6 0.7 1 23 677 700 677 700 0.95

9 9 0.19 16 6.9 0.7 2 20 732 750 732 752 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0043	0.36	12.1	0.2	1	20	122	141	122	143	0.95
2	9	9.2e-05	0.0078	17.3	0.9	1	23	181	203	181	203	0.98
3	9	0.057	4.9	8.5	0.6	3	21	234	252	233	253	0.92
4	9	0.021	1.7	9.9	3.9	2	21	493	512	492	513	0.95
5	9	0.0072	0.61	11.4	0.2	3	20	542	559	540	561	0.91
6	9	4.4	3.8e+02	2.6	0.0	2	23	589	610	588	610	0.93
7	9	0.009	0.76	11.0	1.3	1	23	616	638	616	638	0.99
8	9	0.47	40	5.6	0.7	1	23	677	700	677	700	0.95
9	9	0.19	16	6.9	0.7	2	20	732	750	732	752	0.92

Sequence Information

Coding Sequence: ATGCATTGTTCTCCTGCAATTCGTGAGGCAACTTCGCAGTCAAAGGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACACCAAGCTCAGGGGGCGAGCGCGCCGCGTCCAGCGGGGGCGCCTCCCCCGCGTCTGGAGGGTCGCCTGCCGCTTCACCGCCTCGCCTGCGCCTCAACACAAGCCTCGCCACTGACCCGGCGCTCGCTCCACAGGCGACGTCCCTCAAACACGAGCCTCCTTCACCAtcaccgccgccgccacccGCGCCTCAAGCTAGAGATTACCTTGCTTTGACGGCGGCCGCCTTCCCAGGACTATTTCCTGCGTCTGCTGCTCCGAGCTATGTATGCAAGCCATGCGGCATTCGCTACTCTTCTCTGAGCACGTTGCAAGCTCATCAAGAACACTATTGTTCGAATAGATTGCCCAAGCCGACGGAAGGTACAAATGCAACAGCCGATCCTTCTGTTGATGAATCGAGCAGTGATGCAAAAACTCCGCGTCCTGCCGGAAAGCAGTATGCCTGCACATACTGCTCGTATAGTGCCGACAAGAAAGTCAGTTTGAATAGGCACATGCGAATGCATTCATCGTCGCCAGTAAGCAGTGGCACTCCAGCGCCGACACCGACCTCTAACGGCGAAGCCACAGAGGGTCCACCGGTACAGGACCGCTATTGCGCAGACTGTGATATTCGATTTAGCTCTATAAAGACATACCGAGCGCATAAACAGCATTACTGTAGCACAAGACAAGTTGTAAAACAGGCGCTGGCTGCAGCCAGAGGCGGCTCCGCAACCTCGGGATCCGCGCCGCCGTCACCGGGAGCGACGCCACCAGCGCAGAACCAATACGCGCTCGCATTACCGACTAATCCTATTTTAATTGTGCCCTACTCACTATTACGGAGTGCTAGTACTCTCCCGGGTGCAACACTACCCGATCCGGATACGCCATGTTTCCTATTACCAAATGGAACATTCCAGCCAATCAGTCGGGCCTTATCTAACATGAATGCGGAAGGAAAAGAATCTGAGGTTTTAAAATCAGCAAATCGACCTCGAGAGCCGTCAAGGGATGGTGCCACTCCTTTGGATCTTAGTGTACGGCGGTCACCGGAGTCTGTAGTAACAGATGAACACGAGAAAGAGAATAGAATACGTTCAGCGACACCTGAGCAGATTGTGTGCGCTCCTTCTTTACCAGGATCGCCAGGCACACCGTCTCCTTCTCGAAGGTCGTCATCACCGAGTGGAGAAAGTTCGCCAAAGCGACGACGGCGGAATTCTAGGGGTCCCACTCCAAAACCTCCCAGCGTGCCCTCGCCACCTGAAGAGAAATTCACACCAATTGTTCCTCCTGCAATTCTTCCTCCTGCTCTAGCGATTCGCCTTGCATCAGAATTGCCAGTTACTGCTGCATCTCCTCAAGTGCTGGTAAAACAAGGAGTTTCGAAGTGCAAGGAATGCAACATAGTGTTTTGCAAGTATGAGAACTATCGCATCCACAAGCGGCATTACTGTTCGGCGGGTGGTGGAGAGGAGCGTGCGAGCCCCGCGCCTCCGGAGCCGGGCCCACCGCCGCAGTACCGCCAACTGATCTGCCTGGCGTGCGGCATACACTTCAGCTCGCTGGACAACCTAACGACGCATCAGTCGTTCTATTGCACCAAGCGGGAGACGCGGTCGCCGCGTAGCGTGCCCGAGGCTCCACGTCCGACGTCGGGCTCCGAAGGCGGTTGGAAGTGTCCGTGCTGCGAGGTGGTGTCACCAACTGCGGCCGCCGCGCAGCGACACATGGAGGCCCACGCCGGCGTGAAGGCCTTCCGCTGCACCATCTGCCGGTATAGGGGAAACACACTGCGAGGCATGCGTACTCACATTCGCATGCACTTTAACAACAAGAAGCCTGCTGATCTGCAGGAGGAGAGCTACATCGCATGCGTACTGGAGGAGGACAGCCGGGAGGCCACGTCCCCAAGCCCAGCAGTGGGCGGCGAGCGCGTGCACCGCTGCGGCAGCTGCGCCTACACCTCCACGTACCGCGGGAACGTCGTGCGACACGCGCGACTCGTGCACGCGACCGACGAGCCCGAAGAAGAACAGACCTCGCCTGTACCTGCAGTCGACATTAAAAAAGAACCGGAGACAGAGCTTGAGGAAACACCAAACTATTGCAAATCCTGCGACATATCCTTTAAATACGTGAACACTTACAAAGCGCATAAGCAGTTCTATTGCACCGCTAACAACCAGGACGCGACCGCCAACAACAACGTGCCCACGCCCGCCAGGGTCACAGACACACCTGTACTATAA
Protein Sequence: MHCSPAIREATSQSKGEDEEWGNESEAMPGEPRTPSSGGERAASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATSLKHEPPSPSPPPPPAPQARDYLALTAAAFPGLFPASAAPSYVCKPCGIRYSSLSTLQAHQEHYCSNRLPKPTEGTNATADPSVDESSSDAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEATEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGATLPDPDTPCFLLPNGTFQPISRALSNMNAEGKESEVLKSANRPREPSRDGATPLDLSVRRSPESVVTDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPSVPSPPEEKFTPIVPPAILPPALAIRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPAVDIKKEPETELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPARVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -