Pfes026191.1
Basic Information
- Insect
- Plusia festucae
- Gene Symbol
- -
- Assembly
- GCA_950381575.1
- Location
- OX494460.1:2904026-2915138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.03 2.6 9.4 0.2 1 23 192 215 192 215 0.93 2 11 0.0092 0.78 11.0 2.3 2 23 223 244 222 244 0.97 3 11 0.0077 0.66 11.3 0.3 1 23 248 271 248 271 0.97 4 11 5.5e-05 0.0047 18.0 1.2 1 23 307 329 307 329 0.98 5 11 0.0046 0.39 12.0 1.3 3 22 341 360 340 364 0.89 6 11 9.7e-05 0.0082 17.2 0.4 1 23 405 427 405 427 0.98 7 11 0.014 1.2 10.4 0.5 2 22 436 456 435 460 0.90 8 11 2.4e-05 0.0021 19.1 0.4 1 23 468 491 468 491 0.91 9 11 0.0025 0.21 12.8 4.7 1 23 497 520 497 520 0.96 10 11 0.0021 0.18 13.0 3.7 3 23 529 550 527 550 0.92 11 11 0.018 1.5 10.1 3.2 1 23 556 579 556 579 0.97
Sequence Information
- Coding Sequence
- ATGGATatcgaaaatattaatttatgttgcGGGTGCTTGTGTTCTGACaggaaaatgataaaattcgATGAAGTCTGGATGAAACAATCTTTTTTGGAAATTATAAACGAATTATCCGGGCCACAGACAGATCTTCCAGTGTCTCTATGTTGGGAATGTGATGGACAAATTCGTCGGTTTACAAAGTTCAAGCAGAAAGTTAAAAACTCCTACACTATATTCAATGAACATATAAAACAGAACTCAACCACTAAACTGCAAGGAAAACCTTCGTTGACGTTACATAAACTACACACAATAGAATTATCTAACCATAAAGATATAGAAGAATCTATATTTCAACTAATAAATAGAGAAAAAGATGAATTACCACAAGAAATACCTATAAAAGAAGAATATGATAACAATTTCGACACAGACGACGAAAAGATACCCAAAAAGATAGTGAAAGTTAAAAGGAAGAAACGCAAGAGGAAAGAAATGGAGATCTATATAGAGATAGAGTTGAGTGGAGAAGATTTGGCGGAAGAAAGAAAAATGGCGACGTTAAAAGACGATTATGTTAATGCAATGTTTAAGTGTGATAGATGTATACTGTCTTTTCCAAATGCAGAAGATTTGAAGGATCATGTTACTTTGAAACATGAATTGAATGCATCAAATCTAAAGTGCAGTGTATGCGAGTGCTCCTTCGCGACTGAAGTGTCATACAACtatcatacaaacaaacataaaagaCGTTATCAGTGTACTATATGTGCAGAGAGGTATCCCAGTAAGAGAGCTGTGTTGAAACACTATGAGATGTCGCATTTTCATGGACCATCAATAGAAATTGATGTGCAAAATAACCAACAAAACGATGTAAATGATGAAGATGGAACAGAAGAAAATAGtacaAAGCCTACATCGGCGACATTTTCCTGTGAGTTTTGCGACAAGAGTTTTAGATGGAAGGCTTCGTTAAGAAAACACGTTGAGACACATAGAATAGAAACTGGACAGAAGAGAAAACCGTATTGTGAGCCTTGCAGattATCGTTCACAAATACATCGAATTTACAGAAACATGTCAAAACAAGTTCGAAACaccaaatacaattaaaattaagaAAATTAACAGAATCACTTCCTGATGAAGCAGCCAACCCTGAAAAACATCAACAACGTATCGAACAGATCAAGTGTTCCATAAATAGTGCGAAGGAGAAGTTCCCGTGTCCGCAGTGTGATAAGAAGTTCCAGTGGAGAGGAAACCTGTTGAGACATCTTAATAGTCACGTTGCTAGAGCGAATGGAGAGTTGGTATGCGAGCCATGCAATCGAACATTCTCATCGATTGCAACTTACAAACAACATATGAAAATAAGCAGAAAACACGTCAGCGAAAACGATTTCAaATACATGTGCAGCGACTGTGGGAAGCGGTTTGCCAATAAAACTCGTTTAAAAGACCACGTGGATTGGGAACACCTGAAGAACTATGTGCACACATGTTCCTTATGTCAAAAGGTATTTAAAAGCCACACATCGTTATATTTACACAAGCAAGTAGTTCATAAGAAGGACAACGCAGAACATCTATGTGACCACTGCGGAAAACCTTTTCCCAACCAAGCCAAGCTCCGTTGTCACATGCAAGCCCTCCACAGCGGTTCTTCAGCCTACAAGTGCAGCACTTGCGGTGCGAGGTTCAGCTGGCTCTCCTGCCTGTCTAGACATAGCAAGAAACTGCATCCGCCGACATCTGCACCTGTCTCCAGCTAG
- Protein Sequence
- MDIENINLCCGCLCSDRKMIKFDEVWMKQSFLEIINELSGPQTDLPVSLCWECDGQIRRFTKFKQKVKNSYTIFNEHIKQNSTTKLQGKPSLTLHKLHTIELSNHKDIEESIFQLINREKDELPQEIPIKEEYDNNFDTDDEKIPKKIVKVKRKKRKRKEMEIYIEIELSGEDLAEERKMATLKDDYVNAMFKCDRCILSFPNAEDLKDHVTLKHELNASNLKCSVCECSFATEVSYNYHTNKHKRRYQCTICAERYPSKRAVLKHYEMSHFHGPSIEIDVQNNQQNDVNDEDGTEENSTKPTSATFSCEFCDKSFRWKASLRKHVETHRIETGQKRKPYCEPCRLSFTNTSNLQKHVKTSSKHQIQLKLRKLTESLPDEAANPEKHQQRIEQIKCSINSAKEKFPCPQCDKKFQWRGNLLRHLNSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCSLCQKVFKSHTSLYLHKQVVHKKDNAEHLCDHCGKPFPNQAKLRCHMQALHSGSSAYKCSTCGARFSWLSCLSRHSKKLHPPTSAPVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01488031;
- 90% Identity
- -
- 80% Identity
- -