Pfes002055.1
Basic Information
- Insect
- Plusia festucae
- Gene Symbol
- -
- Assembly
- GCA_950381575.1
- Location
- OX494431.1:8492398-8498404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.042 3.6 8.9 0.6 2 23 224 246 223 246 0.94 2 11 1.7 1.5e+02 3.8 0.2 6 23 256 273 254 273 0.91 3 11 0.00036 0.03 15.5 3.2 1 23 307 329 307 330 0.92 4 11 0.00012 0.01 16.9 0.7 3 23 365 385 363 385 0.96 5 11 0.00037 0.031 15.4 2.9 1 23 393 415 393 415 0.97 6 11 0.00092 0.078 14.2 1.9 1 23 424 447 424 447 0.97 7 11 0.00025 0.021 15.9 0.2 1 23 453 475 453 475 0.97 8 11 4.8e-07 4.1e-05 24.5 3.0 1 23 481 503 481 503 0.98 9 11 0.00043 0.037 15.2 1.0 1 23 508 530 508 530 0.98 10 11 3.3e-06 0.00028 21.8 4.2 1 23 536 558 536 558 0.97 11 11 0.0002 0.017 16.3 2.7 2 23 565 587 564 587 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGAGTGTTAGTGATTTGTGTAGATTATGCGCAAAGAAAGTTTTCGACGACTTCTCTAAAGATCTACTGGATGAAAGCAAtagaaatgtattaaaaataatacaagatTTTGTACAAATTATGATTTATGAAAACGATAATATGCCTACAAAGATTTGCCTGAACTGTGAAGaaaaaatagtttcatttcAACTGTTTATTCTTGAATGTTATAAAGTGCAAGAAactcttaaaaatatgtttgaagaCAGCTCTAATACTTGTGATGTCAAGCTGGAACacaacaaatttaatgattttggAGTACCAATAAAATCTGagGTTAAAGATGAGGTGTCTGCAGAGGATTTTGTTAGTGCATTAAATAATGATCAATCATTAGCTGAGATAGATTTGTACACTGATGCTCATGGTGATCATATAGATGACGATATTcaaaatgatgatgatattcAAGAGGATGAAAATGTGGAAGATGATGATGAGGATGATgagaatgatgatgatgaagatgacgAGTTTTTAGAAGATGTTGCTATAGCAAcattaaaatcaagaaaatataaACGTATTAAGAGGAAAGAAATTACTGAAGAACAAGCAGAGGAATTAAACCAAAttcttaaaaaacataatttgtcaGTAAAGGATTTAGTTAAATTGGAATGTAATTTCTGTTCTGAGAAGCAGAAATCATGGAGCAATTTACGTCTACATTATGCAGTAAAACATAAAAGTAAACCATTTGCTTTCTGCCTATGTGGCTTTGTTGTGAGATCTAAAAGTGTTCTTTATAAACATGTAGCAGACCACAAGCTAGAAAGTAGGAAAGCAATCAAGAATAATCCCGACATTGTAGCAGAAAAACAAAGCatgaaatgtttaaatttaaatgtgaaaGATTTTATAAGGTTTTTGTGTCCCAACTGTGATAAGGAATGTTCGAGCTGGTATACTTTAAAGGCTCATAGTGAAAGACATCATAAAGTACCGCCAGTAGTGTCTTGTATGTGTGGTATTATTCTTAAGTCCAAGTCAGTCATGTACAAACATGTACAGGACCACAGAAATCCCAATGTCTTGGCATGTGACAAGTGTCCGCGCATAACGAAAACCCAATCTGCCCTAAATAAACATAAGATGAGGCACATACCGAAATCGGAAAGAAAGTTTTGTTGTTCGTCTTgtgagaaaatatttaattcgagGGATGCTTTAAAATCACATGAAAGATCTCACATACCTATAGAAGAACGTAAAATATATCACTGTGACATTTGCAAATTGAAGTTTACGACTCGTTCGTCGGCCGCGTCACATAAGCGCGTGGTACACGATAAGATCAAGGGGTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGGGAACTGCGCCAACATCGAGCCATACACAGCGATGAGAAGCCTTTCGTATGCAGGAAGTGTCCAAAACGATTTAAGACTTATTCAAATCTGAAGACGCATATGGACACCCACGAGGACACTTCGTACGAGTGCTACATCTGCAGGCGAGTGTTGAACAGCCGCCGAACGCTTCGCAAACATCTGCTGGTGCACGAAGACAAATGCAGACATGTCTGCTCTTACTGCAACAAAGCATTTAAGAGGAGACAGACGTTAAAGGTGCACATGTACACCCACACGGGCGACAAGCCGCTGTCGTGCAAATGGTGCGACGAGCGCTTCTCTTACGCGTCCACACTGCGCTCGCATCGCCTGCGCTGCCATCCCGACAAGATGGCGCATGCGCACGACACGTTCACCAATTACGGCCAGATGGCTCTGCAACAGGATTACATAAAGAATGATGTGCCCGCTGTGAACATTCCGGTAGCGAAAAACGAAGTTGAGGCTATGTAA
- Protein Sequence
- MAMSVSDLCRLCAKKVFDDFSKDLLDESNRNVLKIIQDFVQIMIYENDNMPTKICLNCEEKIVSFQLFILECYKVQETLKNMFEDSSNTCDVKLEHNKFNDFGVPIKSEVKDEVSAEDFVSALNNDQSLAEIDLYTDAHGDHIDDDIQNDDDIQEDENVEDDDEDDENDDDEDDEFLEDVAIATLKSRKYKRIKRKEITEEQAEELNQILKKHNLSVKDLVKLECNFCSEKQKSWSNLRLHYAVKHKSKPFAFCLCGFVVRSKSVLYKHVADHKLESRKAIKNNPDIVAEKQSMKCLNLNVKDFIRFLCPNCDKECSSWYTLKAHSERHHKVPPVVSCMCGIILKSKSVMYKHVQDHRNPNVLACDKCPRITKTQSALNKHKMRHIPKSERKFCCSSCEKIFNSRDALKSHERSHIPIEERKIYHCDICKLKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDEKPFVCRKCPKRFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAHAHDTFTNYGQMALQQDYIKNDVPAVNIPVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487936;
- 90% Identity
- -
- 80% Identity
- -