Pfes024779.1
Basic Information
- Insect
- Plusia festucae
- Gene Symbol
- -
- Assembly
- GCA_950381575.1
- Location
- OX494457.1:6937413-6945240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.2 17 6.8 0.2 1 23 80 102 80 102 0.93 2 16 0.073 6.2 8.2 1.0 1 23 175 197 175 197 0.98 3 16 0.0033 0.28 12.4 0.1 1 23 201 223 201 223 0.95 4 16 0.0051 0.44 11.8 0.6 1 23 228 251 228 251 0.95 5 16 0.00083 0.07 14.3 4.5 1 23 257 280 257 280 0.96 6 16 3.3e-05 0.0028 18.7 0.2 1 23 287 310 287 310 0.98 7 16 1.7e-05 0.0014 19.6 0.9 1 23 316 338 316 338 0.96 8 16 0.45 38 5.7 0.2 1 23 449 472 449 472 0.96 9 16 7.3 6.2e+02 1.9 0.2 3 23 498 519 496 519 0.72 10 16 0.26 22 6.5 0.1 1 23 543 565 543 565 0.96 11 16 0.0003 0.025 15.7 0.2 1 23 569 591 569 591 0.98 12 16 0.00031 0.026 15.6 0.5 1 23 596 619 596 619 0.95 13 16 0.003 0.26 12.5 0.3 2 23 626 648 626 648 0.93 14 16 0.068 5.8 8.3 7.4 1 23 655 678 655 678 0.96 15 16 5.2e-05 0.0044 18.1 4.7 2 23 685 706 684 706 0.96 16 16 5.6e-05 0.0047 18.0 1.8 1 23 712 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGCCCGATGAAGAATCAGTACGCGGCAATAACGATCGGAGAAAAGATGGCACCGTAAGTTTGTGTTTAtGTGACCTCCCACAAGACGGAGACTGTCTTAAAGAAAACAGAGATGAATCAAAAACACAAGCCGACGATCGAAAGCATTTCAATGAAGATATTAAAGCTAGGAAAAAACAAGCCGTCTTACTCCTAGAGTACTCCAAAATATGCCCTTTTAGGTGGATGAAGAATTTGTATATCTGCTTCTATTGTGAACAGCAATACTCAGACCCTGAGATATTAAGGCAACACAATGCGATACACAGCTTTCAAAATACGtcacaaataaaatacgctttgtcaaaacttaaaaaatatgaattagtcAAAGTTGATATTACTGATGTTAGTTGCAAGCTCTGCGATGACTATATACCAGATTTCGTTACATTAAAATGGCATTTACtagaaaaacacaaaaagaattTGGACCCGAAATCCGGTGACGGCGTATTACCGTTCAAAGTAACGTTAGACGACTTCCAATGCGCGTTCTGTATTGAAAAGTACACAGAATTCAAGTCCTTAAACCAACATATGAATGTACATTACCAAAACTTTATCTGCGAGCAATGTGGAGCTGGTTTCATAACTCCAGAACGATTAAGAACTCACGCATTTTCACATGAAACGGGATCCTTCTCCTGTGAAAGTTGTGATAAAGTTTTTCGTTCCACAAATGCGAAGAATGAACACTACGCTACAGTTCATATGAAAGTCAAGCGCCACAGATGTCCACACTGTCCAGAAACCTTCAGAAACTACTTCCAAAGAAACAAGCATATATCCTCAATCCACGGATTGAAGTTGAAAGAGTTTAAATGCACGATGTGTCCGAAAGTTTTTACTCTAAGTGGTAAATTAGGAGTTCATGTGAGAACAGTACATTTGAAGATGAAAAGGCATGCGTGCGATGTTTGTGAATGGAAGTTTTACTCCAAATCTGAATTGAAGGAGCATATGATTAGGCACGGCGGAACGGATTCTCCAATACCGCAGACAAAACGAAGAATCGTGCCATTATTCCAAGTTCAGTACGACAGGAGTCTGTGTAGACCTCTAGGAACAGTTCTAGACTTCAGTAGTCTCAAACTAAAGAGTTCCATTAGCCTTAGACCACCATCGAACAATTTCAGTCCTCCGAGAAGTCCATCGCCAGCTTACCCGGACACCCCAACATATATTGGAGAACAGACTGAAATTGTCCAGCCGAAAGTTAGCAAGAATCCTGATATCAGACAGAACGCTTTGATTGTATTTGAATTTTCCACGGTCTACCCTTTTATCTATGGgaacaataaattcaaatgcTTCGTTTGCGCCCAACCGTTTTTAGATATCAATTTGCTGAAAGGTCACATGAGAGAATCTCATACATTCGCTCCTCTAAAACGATTAGTGAATAATCGAAGAGAAACGGTTTTAAAAGTTGATGTGAGTGATGTAACTTGCAAATTATGTAGTGATAGACCAGCAAATCTGGTCGAATTGAAGCGACACCTCAAAGAAGTTCATGATAAACCAGTGGATCTTGAAATTCAGGATAATTTGATACCTTTCAAACTTGATCTTATAGACGAGTCGTATCGGTGTGTCATTTGTGAACAGAACTTTATAAAAGTACGGATATTGGTAATACATATGAGCGTACATTTCAATAACTACAGCTGCGAGATTTGTGGGTCTGGGTTCATGACCTTAAGACTCCTTAAAAAGCATTTAGAAGTCCACGATTCAGGGAATTTCCCCTGCGACAGATGCAATAAGGTTTTCAGTACGCCTTACAAGAGAACTTTACACGTTCGAGGGGTGCATTTGAAGCAGTGTCCCAGAAGATGTCCAATATGCCCTGAAAGGTTCAACTCGAATTATAAAAGGACAATACATTTGCAGGATGTCCATAATCAGGCGACTAGGGTCCATAAGTGTAAAACTTGTGGACGAGGTTTCAATTTGAAGTATCACTTAATTTGTCACACAAGGTCGGTCCATCTTCAGGAGAGGAACCAGCAGTGCGATGTCTGCCATCAACGATTTTGTAACAAGGAGTCTTTAAAGCGTCACATGGTGATTCATACTGGGGAGAAGAATCATAAATGTGATGTATGCGGGATGGCGTTTTTGAGACGGAAGAATTTGAAGGATCATTTAAGAATGCATGATTTGGGGTAA
- Protein Sequence
- MPDEESVRGNNDRRKDGTVSLCLCDLPQDGDCLKENRDESKTQADDRKHFNEDIKARKKQAVLLLEYSKICPFRWMKNLYICFYCEQQYSDPEILRQHNAIHSFQNTSQIKYALSKLKKYELVKVDITDVSCKLCDDYIPDFVTLKWHLLEKHKKNLDPKSGDGVLPFKVTLDDFQCAFCIEKYTEFKSLNQHMNVHYQNFICEQCGAGFITPERLRTHAFSHETGSFSCESCDKVFRSTNAKNEHYATVHMKVKRHRCPHCPETFRNYFQRNKHISSIHGLKLKEFKCTMCPKVFTLSGKLGVHVRTVHLKMKRHACDVCEWKFYSKSELKEHMIRHGGTDSPIPQTKRRIVPLFQVQYDRSLCRPLGTVLDFSSLKLKSSISLRPPSNNFSPPRSPSPAYPDTPTYIGEQTEIVQPKVSKNPDIRQNALIVFEFSTVYPFIYGNNKFKCFVCAQPFLDINLLKGHMRESHTFAPLKRLVNNRRETVLKVDVSDVTCKLCSDRPANLVELKRHLKEVHDKPVDLEIQDNLIPFKLDLIDESYRCVICEQNFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHVRGVHLKQCPRRCPICPERFNSNYKRTIHLQDVHNQATRVHKCKTCGRGFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRMHDLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -