Pfes002025.1
Basic Information
- Insect
- Plusia festucae
- Gene Symbol
- -
- Assembly
- GCA_950381575.1
- Location
- OX494431.1:8193891-8196578[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-14 2.4e-11 43.8 0.0 1 42 14 55 14 57 0.94 2 2 6.9 2.1e+03 -0.8 0.0 25 37 310 322 309 323 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGgaactataaaagaaaaaaactaccAAAATACACGCCAGATGATATGGCTAAGGCAATCCAAGCCGTAGTGAAGGATGAAATGAGTATGAGTGCTGCTGCTAAAAACTTTGGAATACCAACCACTACACTTTTTGATAGGTTGAGAAACAATACTTCAACTGTCGGCAGACCACTGGCTATACCATTTTCGACTGAACAACGACTGGCAGATGCCATCGCTATAATGGAGAAGTGGGGATTTGGTCTATCAAGACAAGAAATTTTGGACATAGTTGCAGATGTATGCTTGATTGATACAGAATATGGACAAGAGGTGGAAGATTCAACTATGGAAATTCTAGACGAACAAACAGGGCATATACGAACTATGGTTGTTACCAATGCTGTGATAGAGAAACCAAAGACACCAAACGTAGAACGCAAGCGTCGCTTTAGTAGACGTGAGGCGGTTActaataccaaaaaaataaaacaacaaccaAAAAGACCTAAGATAAAGAAAACTTATGAAAATAGTTCAACAACTTCAGAGGAAGATATTATGAGCATCCATAGCGACAGTGACACAGACAATATTGTATCACTATCTGATGATGAAATTGAAGACGAAGCTGCAATAACAAAAAAGATGAATGAAAAAGAAGATGCTATATTTGCAAAAATTGAGGctttagataaaatttataagaCTGAACAACAATTACAGACTGAGATTGAACCTAATatactagaaaataaaataaacttcaaagaaAACGAGATCAATGAAAAAGAGGTGATAGTTAAAGAAAAGAAAGTATGTAACAAAGGTAAAaggataaataataaacagaagAATGCtacaaatttaaatgaaaataaagaaaatgaagGCGAATCGAGTATGCTGAAAACTGGAGCAGAAGAAGTTACAACTGTTGCATATGATATTGGACAAACTGTCCTGGTCAGATATTATGGTCCGAAAAAATGGAAATATTATGTTGGTTGGATAACAGAGCTAAAAAATAGCCAATTCAatagaaaatatgaaatatcaTTTTATAGAACTGTGCGGAGAAAGAATAATCTTAAATTTGTAAAACCCAAAAAATGTGACGTCGATTTAGTACCCATCGATGTAATCGTCAAAGAAATACAGTTAATACAGATACGGGAAAAGCCAGATGAATACGTCCTTAATAATGATGAagaagaagtttatttttaa
- Protein Sequence
- MPRNYKRKKLPKYTPDDMAKAIQAVVKDEMSMSAAAKNFGIPTTTLFDRLRNNTSTVGRPLAIPFSTEQRLADAIAIMEKWGFGLSRQEILDIVADVCLIDTEYGQEVEDSTMEILDEQTGHIRTMVVTNAVIEKPKTPNVERKRRFSRREAVTNTKKIKQQPKRPKIKKTYENSSTTSEEDIMSIHSDSDTDNIVSLSDDEIEDEAAITKKMNEKEDAIFAKIEALDKIYKTEQQLQTEIEPNILENKINFKENEINEKEVIVKEKKVCNKGKRINNKQKNATNLNENKENEGESSMLKTGAEEVTTVAYDIGQTVLVRYYGPKKWKYYVGWITELKNSQFNRKYEISFYRTVRRKNNLKFVKPKKCDVDLVPIDVIVKEIQLIQIREKPDEYVLNNDEEEVYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -