Pint017571.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050491.1:2773959-2784772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.8 3.9e+02 2.1 0.1 2 12 483 493 483 498 0.82 2 13 1.7 98 4.0 0.2 1 20 502 521 502 523 0.95 3 13 0.0094 0.55 11.1 1.7 1 23 543 566 543 566 0.94 4 13 3.7 2.1e+02 2.9 3.5 2 21 580 606 580 607 0.85 5 13 8.6 5e+02 1.8 0.5 1 20 604 623 604 624 0.92 6 13 3.4 2e+02 3.0 1.2 2 23 635 656 634 656 0.95 7 13 0.062 3.6 8.5 0.2 2 23 1057 1078 1056 1078 0.93 8 13 0.0011 0.064 14.0 0.8 2 23 1094 1115 1093 1115 0.96 9 13 6e-06 0.00035 21.1 3.5 1 23 1121 1143 1121 1143 0.98 10 13 1.4e-05 0.00081 20.0 0.1 1 23 1148 1170 1148 1170 0.98 11 13 0.16 9 7.2 0.2 7 23 1182 1199 1179 1199 0.94 12 13 0.066 3.8 8.4 0.8 1 19 1205 1223 1205 1224 0.86 13 13 0.004 0.23 12.3 0.1 3 23 1237 1258 1236 1258 0.93
Sequence Information
- Coding Sequence
- ATGTCGCAGCCACAACGCAGGTCTAGAAAAACAAGATTAGTGCCACGATGTACAGAAGGAGGAGAGCCTGAGATTGAGGAAGTCATCGAAGAGAAGaaACGGCAAATAAGAATTATGAATACAAAGAGTTTGTCGTCACCCCGGCCATCGACGTCGCAGCCAGCGAAGAAGAATGAATCTTTACAGTTTAAAGTTGATATAGAAGTCGAGGAATGGATAGATGATGAACTCTTTATCGAGGAAAACTTCGCTAAAATGCAATCAGAGAAGCTGTCAGAGGCATTAGAGAAGGAAATTAAAGAAGAAGTCGACTGGACTAAAGATGAATACGGCAAGTTTTGGGCAGACGCGGCCAGTGACGAAGAAGTTGAGGACAGACCTCTAAATGAGTATGAAAAGATAATCAAAAACCAGGTTGACCCAAGACTGATAGTAGGCCCTTCGAAAGCTGAACCTGAACCGAAAAAAGctaaattagataataaaaaatctaataaaggAGATCAGAATAAACCAACACCAATTCCTAACATTCCCAAACCGAATTTGAGAGTTAAATATGTCAAACCTGCCaaaaagacagacaaacagaaaaagaatGAACCAGTGAAACATGTGTCAAATGTTAATTTGCAaccgaaattaaaaatcaacatcGTTTTTGATGACCCTGTGCCCGAAAAGCCTGTGGATGTAGATAAATCAAGTAAAAAGAAACCAGTGAGAGCTGATGCATTGACtccaaaaacaacaaaattgacTCCAAAAACAACAACATTGACTCCAAAAGATATAAgaccaatatatataattggtGATAAAGCTGTCCCAAAAGCTATAGCCGACAAAAATACAGATTGTACAGAGAAAACTAAAGCTACAACCTCACATGTTGAAAATGATGAGgaatttgaaaatgttgaGGAATTACTTGCAAgaccaatttatttcattgaagtGAACAAGGCAGCCGAGAAAATCAACAAATCCCAACTCCGCAATATGGCTTATAAATctgttttgaaaaaaacaatcaatgaTGATCATATACTTGAACACATTGTGGTCAATGAAGATGAAATCCTATCTGTAGCAGATGGTTTAGCCCAACAAGATGATGAAGTGGCAAAACTGTTAAATATTGAGTTACGGAATAGACTAGGTAGTGCCAGATTTGAGACTTTGGAAATATCCAGAGAGGATGCCTTAGTGGATTATGCTTTCCGTCAATGGTTCGCTTATCAGGGATCGGCTAAAGCCAGGACTGTTCCATTACTATacaaatgttatatatgtaaCGATGGTTGGTGGCACTTGGAACCGTTCCGGAACCATATAAAGAAGCATACGTATGTGGTAGTTGCGCTAGAAAAGCATAACCAGGAATGTAGTATAATAGCTCACGATGCGAAACCATTTAAATTCAGGATGTTTCCTATTGACAACGAATGCTGGAGGTGTGGTAAAAGCTATGCTTTTCATGTTGGACTGGATCAAACTGCATACAAGTGTCCAGCTTGTGACAGTTCGTTGTACACATGTTTAGGGCTCAAAGAACACATGGGTGTATGTCTCAGTGTATGGAAAAAGCAAATGACATTGCAAGCAACGAAAGATATAAAGGCATACAAATGCAAGATTTGTCCGCAGATATTCTTCGAAGAAGCCGCACTACACAAACACCAGTATCAATATCACGTGCCACGTTCGGATTATCCTATGTTGGTGTCAGTGCGTCAGTGTTCGTATTGCAATCAAAACTATTTGCTATATACGTTCCACTACTGCCGTCGGACCAATCTACAGAGACACATATGCAAATTCTGTATGAGGCATTTTCCATCGGGGACCGCATTGAATTTACATTTGGAGGATACAAATAGGGTGTCGAAATTGAATGTGAagtgtaaattttgtaatgagGTAGTGGAGAGGGACTGTTATATGATGGAGCATGTGTTGAAGCACACGGACAAGTTTGTGTTGGTGTATAAATGCTTGGCTTGCCCGAGTAATGTGCTGCTAGAGAATTTTGTGATGGTGCAGCGGCACGTAGCGCTAGTACACAAGGCGTCGAAACTGGCGTGGCGATGTGCAAAGATGATTATTCCAACAAGTTTGTACAAGGACCACAAGCGTGTAATAGAATACAAGTCAAACAATACAACAGataaaaagaaaaggatTCGCAAATCTTCCACTACGGACGACCCAAATGATAGTGAAGATGGAGCAGAGGTTATAACAAGTACAGATAATCAAGACCCAAATGCAACTGGACCAAGTAATGATTATAATGACGATAAAAATGGTGATACACGAGATGATGAAGACTCAGCTTCAGATGtagaatttataataccaGAAATTGCAACAGAAACTCTAGAATTGGAAGCAGAAGATACACCAGAAACTTTAAAACTGGACTCAGTAGcagaagataaaataaaagctccAAAACCGGACTCAGTAGCAGAAGATACAATAAAAGCTCCAAAACCGGACTCAGTAGCAGAAGATACAATAAAAGCTCCAAAACCGGACTCAGTAGCAGAAGATACAATAAAAGCTCCAAAACCGGACTCAGTAGCAGAAGATACAATAAAAGCTCCAAAACTGGACTCAGTAGCAGATGATACAACAGAATCAACAATTCAAGAAACTACAGAGACAACAGACATTGATGTTAAGCCAacgataaaaatcaaaaacgtATCAGACGATTGTTGCGAACAAGAATCACCGAAAGATACagaaatcaatataaaaccAATACTGCCCGTTTCGGTTGCATCAATCAAAATGGAAGTGGATGACGTTGGCGCGGCAATCAACGTGTCAGAACTCTTGGAGTTTGAAGAAATGCCAGTGAAACAGGAGATAAATGATGTAGGTGAAACCTCGAAGAGCTCAGCGGAACAATTTTCCGAGCAGATCCAGAATTTTCTAGATTATGAAGCTACAAGTCAGAATGGAATAGATGACTTGTGTGTATGTTCTAGTTGCGATTTTGAAGGCACATCAAGGGAATATAAGCATTGGGAGGTGCATATACATCAAGATATAAGTGTGGCTGTGCATTACAAGTCTGATGGGATCATATCTAGAAAGTTACTCGAAGTCATTCTTGatatattccAAGCGTCAGTGACGCGTAACATACCGAAGGTGTGTGTGGTCTGCGGCCGCGAGTTCGCCCGCATGAACGAGAAGAAGCGGCACCTGGTGGAGCACCTGCTGGAGGCGGCGGCCGAGGACCGCGGCCGCAATCGCTCGCTGCGCTGCCAGATCTGCAGCGCCGGCTTCGAAAAGACTGACCAGTTCCGGCGCCACATGCGCGATCACGCGGGCCTGCCCGTGTACCACTGCGAATTATGCGACAAAACATTCAGTGATTCGTCAAATTTTGTGAAGCACAAAAAAGTTCACAACTTGGAAACGTATGTCTGCGATGTTTGCAACAAGAAGTTCGTGGCTAAGTCTTCGCTCGTCGCGCATATAGCTACACACAGCCCCGAACCAATCATCTGCATTCGCTGTCCAGACAGATCCTTCTACAGCGAATCAATGTACCGTCGTCACGTTAGGACCTACCACGATAAGGTCAGCTACTATACGTGCAACATGTGCAGGAAAAGGTTCTCCAGCGTCAAAGAGAAGTGGGACCATCAGTGGGAGGAGCACAAGATGAGGAGCCAGATAGCGGACTGTCCGGAGTGCGGGGAGAAGTTCAGGAAGGTGACCGATGTGAGGAAGCACCTCGCTCTAGTGcacagtgttagtaataaataa
- Protein Sequence
- MSQPQRRSRKTRLVPRCTEGGEPEIEEVIEEKKRQIRIMNTKSLSSPRPSTSQPAKKNESLQFKVDIEVEEWIDDELFIEENFAKMQSEKLSEALEKEIKEEVDWTKDEYGKFWADAASDEEVEDRPLNEYEKIIKNQVDPRLIVGPSKAEPEPKKAKLDNKKSNKGDQNKPTPIPNIPKPNLRVKYVKPAKKTDKQKKNEPVKHVSNVNLQPKLKINIVFDDPVPEKPVDVDKSSKKKPVRADALTPKTTKLTPKTTTLTPKDIRPIYIIGDKAVPKAIADKNTDCTEKTKATTSHVENDEEFENVEELLARPIYFIEVNKAAEKINKSQLRNMAYKSVLKKTINDDHILEHIVVNEDEILSVADGLAQQDDEVAKLLNIELRNRLGSARFETLEISREDALVDYAFRQWFAYQGSAKARTVPLLYKCYICNDGWWHLEPFRNHIKKHTYVVVALEKHNQECSIIAHDAKPFKFRMFPIDNECWRCGKSYAFHVGLDQTAYKCPACDSSLYTCLGLKEHMGVCLSVWKKQMTLQATKDIKAYKCKICPQIFFEEAALHKHQYQYHVPRSDYPMLVSVRQCSYCNQNYLLYTFHYCRRTNLQRHICKFCMRHFPSGTALNLHLEDTNRVSKLNVKCKFCNEVVERDCYMMEHVLKHTDKFVLVYKCLACPSNVLLENFVMVQRHVALVHKASKLAWRCAKMIIPTSLYKDHKRVIEYKSNNTTDKKKRIRKSSTTDDPNDSEDGAEVITSTDNQDPNATGPSNDYNDDKNGDTRDDEDSASDVEFIIPEIATETLELEAEDTPETLKLDSVAEDKIKAPKPDSVAEDTIKAPKPDSVAEDTIKAPKPDSVAEDTIKAPKPDSVAEDTIKAPKLDSVADDTTESTIQETTETTDIDVKPTIKIKNVSDDCCEQESPKDTEINIKPILPVSVASIKMEVDDVGAAINVSELLEFEEMPVKQEINDVGETSKSSAEQFSEQIQNFLDYEATSQNGIDDLCVCSSCDFEGTSREYKHWEVHIHQDISVAVHYKSDGIISRKLLEVILDIFQASVTRNIPKVCVVCGREFARMNEKKRHLVEHLLEAAAEDRGRNRSLRCQICSAGFEKTDQFRRHMRDHAGLPVYHCELCDKTFSDSSNFVKHKKVHNLETYVCDVCNKKFVAKSSLVAHIATHSPEPIICIRCPDRSFYSESMYRRHVRTYHDKVSYYTCNMCRKRFSSVKEKWDHQWEEHKMRSQIADCPECGEKFRKVTDVRKHLALVHSVSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -