Basic Information

Insect: Plodia interpunctella
Gene Symbol: RREB1
Assembly: GCA_027563975.2
Location: CM050484.1:3693993-3708156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.013 0.77 10.6 0.5 1 23 92 115 92 115 0.96

2 11 0.023 1.3 9.8 0.1 1 23 305 327 305 327 0.97

3 11 0.0012 0.072 13.8 0.4 1 23 336 358 336 358 0.99

4 11 0.00077 0.045 14.5 2.0 1 23 364 387 364 387 0.97

5 11 0.0031 0.18 12.6 1.6 1 23 733 756 733 756 0.96

6 11 0.00026 0.015 16.0 1.3 2 23 951 972 950 972 0.97

7 11 0.026 1.5 9.7 5.3 1 23 978 1001 978 1001 0.97

8 11 0.092 5.4 8.0 1.3 1 23 1034 1058 1034 1058 0.91

9 11 1.6 94 4.0 0.1 1 23 1082 1105 1082 1105 0.84

10 11 0.0019 0.11 13.3 0.2 2 23 1145 1166 1144 1166 0.96

11 11 0.029 1.7 9.5 5.3 1 23 1172 1194 1172 1194 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.013	0.77	10.6	0.5	1	23	92	115	92	115	0.96
2	11	0.023	1.3	9.8	0.1	1	23	305	327	305	327	0.97
3	11	0.0012	0.072	13.8	0.4	1	23	336	358	336	358	0.99
4	11	0.00077	0.045	14.5	2.0	1	23	364	387	364	387	0.97
5	11	0.0031	0.18	12.6	1.6	1	23	733	756	733	756	0.96
6	11	0.00026	0.015	16.0	1.3	2	23	951	972	950	972	0.97
7	11	0.026	1.5	9.7	5.3	1	23	978	1001	978	1001	0.97
8	11	0.092	5.4	8.0	1.3	1	23	1034	1058	1034	1058	0.91
9	11	1.6	94	4.0	0.1	1	23	1082	1105	1082	1105	0.84
10	11	0.0019	0.11	13.3	0.2	2	23	1145	1166	1144	1166	0.96
11	11	0.029	1.7	9.5	5.3	1	23	1172	1194	1172	1194	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCTGCCACCGCGCCCGCACCACCTGCGGCCGAGCCACCCTCTTCGCAacAAATCAAAACAGAAGAGGTCATCACTCAAGCGAAAATAGAGATCgatgaaatggaaaatatgGTGGAGAAACAGGAATTTAGAGCGACCAGGACGACCAGCATCGACAGCGACAACCGCTCAGACaaaagtgaagaagaagactCCAGAAGATCCCGCAAGAGGGCTGCATCTACCTCTCCATCCCCTCTACCCCTAGACAAGAGAACCACCCGATTCGAATGTCCCAAATGCCGACAGCGATTCGATTCCGCAAATGCATTTGACGTCCATAGATTCACTGTCCATGGAGACGACACCAGAACCGGTTTCGATGATCTAACCTTTGTGGACTTTTCAAGCAAAAAGTTTCCGGAAATCGCCCGGGGTATCTGTGAACGAAACCCTCACGTATCTATCACCGAACAACGCTTTAGATGCGACCTCTGCGCTAGGGATTTTCCCTGTGGACAAGCTCTAGACATGCACAGGAAATCATGTTCAGGTACCACTCGCATTCAAAGTCCTGAACGGGATAGGAGGGAAGACTTCTTTGCTAAATTAGATCTTAGAAACCGCTCTTTTGGAATTCCTGGAACTTTGACACCACCAATGGATAGGTTTACTCCAAAGTTTGATGATGGACACCTCACAAATGGCATGAGACACATAGATGCTGCCAGAGATTTAGCTGATATTCAATCTATTCTGAACGTTACATCAGCTGGAAGTCTTTTAGAAAGACTTACAGGTACAAGAGTAGGCTTAGAAAGCACAGTGCTGACACCTCCCGATACCATTATCAAAGAGAGAGAGCAAGAAGAAACGCAAGATAATTTTGCGGCTGAATTCAGACGCATGAAATTACGTGGTGAGTTCCCGTGTCGATTGTGTCCTGCTAAATTCCCAAATCTGAGAGCTCTCAAAGGTCACAACAGAGTCCACCTTAGTGGCACCGGCCCAGGACCTTACCAATGCAACATGTGTCCTCATGCATCGTTGGACAAAGCAGCTTTGGTTCGTCATATGCGAACACATAACGGAGATCGTCCATATGAATGTGCTGTATGTAATTACGCTTTTACTACCAAAGCCAACTGTGAAAGGCATCTAAGAAATCGCCACGCTAAAGTCACGAGAGAAGATGTCAAGCGCTCCATAATCTATCATCCTTCAGAAGATCCCAATAATGATGAGGTAAACTCAAAGCTGGCTAGAGATGAAGTGAAAAGATCTCTCGCTTTCCATACCCCAGACATTGAAAGACGTAGTGAAAATACTGGTCGAGATACACCTCTGACTCATTTTACTCCCAGCTTCATTGCTGACAGACATCCAGTTTCAGCTTTAGTAACTAAGCCATTGCCAGAAACTCCCACGCTGACTCCAAGAGATAATGAACAGGCCATGCCAAGAATTAAGGTAAAAGGTATCGGTCAACTTACTCAGATACCCGAATATAGACCAGCTGACTTATCTTCCTTCAAAACTAATGACGTTCAATCTGATACTTATGAAGAAGATGCTCCTGTTGACCTCAGCACAAATGATAGCTGTGATGTTCTTGATCtcagtaaaaagaaaagagaTGTTGATAGCGACGAGCCCAAAGCTCCACCGAGACCATCCTTTGAGCCTGACCCAACAGCTGCTGCAACAGCATTTGAGAAAACCCGATTGTTGATAGCTCAACAAAGAATTCTCGAGAATACATTGCCTAAAATAGATCCAGCATATTACGCAACACAACTGTCGCAGCTATATGCCGGTACGGTACCCGGTATACCTGGTCTCCCAATACCGCCTTCCTTTCCAATCAATCCTTACTTTCTTCAACCTTCGTTTTTTCCTCACCCAACTGATTCTCAAGAACTTGTCGAAATAAAACAACGTATCCAGAAAGAAATAATTCGAGGCTTGAGCATGTCAGGAGGAAGGCTTGTCGCTAACGAACAAGATACTCAGCCAAAGCAAGAAcctgaagaagaagaacagAAACCATTAGCTTTACCAAGATCGCCATCTCCTATTCCGCAATCCGAATCTCCTAGACCGCTTAGTAACAACATTATACCACAAAATGACTCCGTTAAAATGGTCATAAAAAATGGTGTGCTAATGCctaaacaaaaacaacgaAGATACCGCACTGAAAGACCATTTTCATGCTCTCAATGCTCAGCTCGTTTTACCCTTCGCTCGAACATGGAACGGCACGTGAAACAGCAACATCCACAGCACTGGAGTGTGAGAAGACCAGCGCCAAGAGCTCCTCCTCCGTACCCCAATCCTGACACATTAGTCGATCGTGTCAAATTTGCCTTGCTAGCTCGCCATCTAGAGCGCCCTTTGCAACAACCTGAGCGGTCGCCAGTACGCAGAGATTCTGATGAAGTTGCAGACAATGAGGAAGATGAAGATGACACGCTAGTTATCGATGAAGAACCAGATGCAGATAACAAATCTGATGAGCATTCCGCAGCCCATAGAGCTGCAGCTGAAATTTTGATGGCGACCCGCCAGCAAGAACTTAATAAGGATTTTGATCTTAAAATTGCTGGAAATTTGATCAATAAACCTATTTCTCTTGTCACCGAAAAGTCTGACGCAGAAGCCGAACCAACTCAAAATCAAGAATCTTTGCCTGTACCTGTGCTATCTGCTCGTagtgatgaagaagaagatgaagAGGGTTTAGTTGCATCGACTAGCGAAGGGAACAACTCGGGAAGCgatgaaaataaaTCTGATGCAGACAATGGAGGTCAACCACCGAAAAAGAAATCTGCATACAGTCTAGCACCCAACCGAGTGTCGTGCCCATATTGCCATAGAAAATTCCCCTGGTCATCTTCACTTCGACGTCACGTTCTGACGCACACTGGTCAGAAACCGTTCAAATGCCCGCACTGCCCTCTTCTCTTCACAACCAAGTCAAACTGCGATCGCCATTTGTTACGAAAACATGGTGGATCAGCAAGGGCCATACTAGCTGAGCCAATCCCGGAAACCGTGACTCCTCCTCAACCAGTAAATGACACGAGAACTGTGCCTGAAAGGCCTTTCAAATGTGCGTCATGTCCAACTAGCACATTTTCTTCTTTAGAAACTCTGAAGAAGCACATGTCATCACGCCATGGAACTGGTGATTCGCAGCCAGGTTCACCTATTCCGGATACAAATGATGATAATACTGATGGATTAGTCTTCAAGTGCCATCTTTGCGAAGGATCTTTCGGTGACAGAGGCGGTGCACTGGGACACTTGGCTTCGGCGCACGCGACGGAATACGAGCAACTTGTCAGCAAAGGAGCGTTAGATGCGGCTAGTGACAGGAGTGAGagtgcagatgatgatgagagGGGCAAGTTTCCTGATCACGCTAATAGAAAGGTCGTTTGCGCATTTTGCGTGCGCCGTTTCTGGTCAGCCGAAGACCTGCGCAGACACATGCGCACTCACTCAGGAGAGCGACCGTTTGCGTGTGATCTGTGCCGGAGAAGATTCACACTGAAGCACAGCATGCTGCGACATCGGAAGAAACACAGAGACGACGCTACTGATGACGAAGAACCTTCTCCACCGATCACGCCTATTGAAGGAGATAATATTTCCAATGGATATCGCTATCGTGACGACGACGGCTCTGGCAATGAGATTCCCAACAACGTCAACAACAACAACTCTCCCCCAGCGGCACCATTCGACAAGAAACTCAAACTGGACATGACTTCCCGTAAATATTCCTCGGAAGCCGAAAACGACGGGGAAAACGGGAGCGATTTGATCGGGAAACTGTTGGGCATTCCTGACAAGACCATAATTAATAAGTTACTTTCTTCAGCGGATGAAGCGGCCAAATTCCTTGGAGTAAACAAATGA
Protein Sequence: MQGAATAPAPPAAEPPSSQQIKTEEVITQAKIEIDEMENMVEKQEFRATRTTSIDSDNRSDKSEEEDSRRSRKRAASTSPSPLPLDKRTTRFECPKCRQRFDSANAFDVHRFTVHGDDTRTGFDDLTFVDFSSKKFPEIARGICERNPHVSITEQRFRCDLCARDFPCGQALDMHRKSCSGTTRIQSPERDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDGHLTNGMRHIDAARDLADIQSILNVTSAGSLLERLTGTRVGLESTVLTPPDTIIKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDIERRSENTGRDTPLTHFTPSFIADRHPVSALVTKPLPETPTLTPRDNEQAMPRIKVKGIGQLTQIPEYRPADLSSFKTNDVQSDTYEEDAPVDLSTNDSCDVLDLSKKKRDVDSDEPKAPPRPSFEPDPTAAATAFEKTRLLIAQQRILENTLPKIDPAYYATQLSQLYAGTVPGIPGLPIPPSFPINPYFLQPSFFPHPTDSQELVEIKQRIQKEIIRGLSMSGGRLVANEQDTQPKQEPEEEEQKPLALPRSPSPIPQSESPRPLSNNIIPQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPNPDTLVDRVKFALLARHLERPLQQPERSPVRRDSDEVADNEEDEDDTLVIDEEPDADNKSDEHSAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPISLVTEKSDAEAEPTQNQESLPVPVLSARSDEEEDEEGLVASTSEGNNSGSDENKSDADNGGQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETVTPPQPVNDTRTVPERPFKCASCPTSTFSSLETLKKHMSSRHGTGDSQPGSPIPDTNDDNTDGLVFKCHLCEGSFGDRGGALGHLASAHATEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDATDDEEPSPPITPIEGDNISNGYRYRDDDGSGNEIPNNVNNNNSPPAAPFDKKLKLDMTSRKYSSEAENDGENGSDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01302795;
80% Identity: -