Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050491.1:2351593-2359098[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.016 0.91 10.4 0.1 1 23 197 220 197 220 0.97

2 10 0.26 15 6.5 5.9 1 23 227 249 227 249 0.97

3 10 0.00024 0.014 16.1 4.0 1 23 303 325 303 325 0.98

4 10 0.0046 0.27 12.0 1.3 3 22 337 356 336 360 0.89

5 10 0.00026 0.015 16.0 0.9 1 23 392 414 392 414 0.98

6 10 0.023 1.3 9.9 0.4 2 21 423 442 422 447 0.90

7 10 0.00014 0.0081 16.8 0.3 1 23 455 478 455 478 0.93

8 10 0.0019 0.11 13.3 3.9 1 23 484 507 484 507 0.94

9 10 6.7e-06 0.00039 21.0 2.6 3 23 516 537 514 537 0.91

10 10 0.0075 0.43 11.4 2.5 1 23 543 566 543 566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.016	0.91	10.4	0.1	1	23	197	220	197	220	0.97
2	10	0.26	15	6.5	5.9	1	23	227	249	227	249	0.97
3	10	0.00024	0.014	16.1	4.0	1	23	303	325	303	325	0.98
4	10	0.0046	0.27	12.0	1.3	3	22	337	356	336	360	0.89
5	10	0.00026	0.015	16.0	0.9	1	23	392	414	392	414	0.98
6	10	0.023	1.3	9.9	0.4	2	21	423	442	422	447	0.90
7	10	0.00014	0.0081	16.8	0.3	1	23	455	478	455	478	0.93
8	10	0.0019	0.11	13.3	3.9	1	23	484	507	484	507	0.94
9	10	6.7e-06	0.00039	21.0	2.6	3	23	516	537	514	537	0.91
10	10	0.0075	0.43	11.4	2.5	1	23	543	566	543	566	0.98

Sequence Information

Coding Sequence: ATGTCGACGATTGTTTGTTGTGGTTGTCTGAATAGTGACCGAAAATTGACTCGCGTCGAAGAGTTCTGGAAGTCTCAGTATTTCAcgcaaataattaatgaagttATGATGTCTCATCAGCCAAGTGAGCCCTTACACCTGTGTTACGAGTGTGACGCGttacttacaaaatttgttaaattcaAGCAACGTGTGAAGCATTCATACAGTGTCCTGTGTGACTACTCACAgaagaaTATCAACATAATTGATCCAAAGCCATCCGTCCTGACATTAAACCATAACATATACAACATCGCCCTCCTCCCCGACTCCAACACCGAAGAAGAAACAATGCAAGTCGTAAAACATGAGGTCGCTCCAAAAATCGAGCTTGACGCCATAAAGGAAGAAGATAGAGTTTCAGTATATTCCGATCATCATGAAGACGACACGCCATTGACAgagttaaaaaagaaaaaaaaagtcaaactaaaaaaagacataaataaaaaaattgagatgTATAGAGAAGTGGAGCTGAGTTTGGAAGAGTTAGAGGAAGAAAGAAGAATGTTAGCATTAAAGGATGAATTTGTGAATGCAATGTTTAGGTGTAACACTTGCATAATGTCGTTCCCTAATGCGGATGATTTGGGTGACCATGTCAAGATGAAACATGAACTGcaCGCGTCCCATCACAAATGCAAAGTGTGCGAGTGTTCATTCGGCTCGGAGTTCTCCTTCAACTACCACTGGAGCAAGCACACGCGCCGCTACGAGTGCTGCGCGTGCGCACTGCGCTGTCGCAGCAAGAGGGACGCGGCCAGGCATTACGACCTGGCGCATTGCTGGGGgCCGGAAATACCATATAACATATCGAAGATTGACAAAAACGACGGACCCGAAGacagCTCTCGAGAGACCTATCCGTGCGAGTTTTGCCACAAGACGTTCAAATGGAAGACGTCGCTCCGGAAACATTTGGAGACTCACAAAATTGAGATGGGAGAGAAACGGAAGCCGTACTGCGAACCTTGtcgATTATCGTTTACGACTACGTCAAATCTACAAAAACATGTGAAGACCAGTTCGAAACACCAGATGAAGTTGAAATTGAGGAAGCTGCAAGACAATCCATCGTCAGTATCGGAGCAGCAGACGCCCGGCGCGCAGGCGCAGGCGCAGGCGCAGTATCGGTGCCCGCACTGCGAGCGCGGGTTCCAGTGGAGGGGCAACCTGCAGCGGCATCTGGCCAGCCACGCCGCCAGAGCGAACGGCAGCCTGGTGTGCACTCCGTGCAACAGAACATTCTCATCCATCGCTACATTCAAACAACATATGGCAATAAGCAAGAAACACGTCTCCGAGGAGGACTACAAGTACATGTGCAGTTCGTGCGGAAAGCGGTTTGCGATAAAAAGCAAGCTCAAGGACCACATTGATTGGGAACACCTCAAGATATACACACACACCTGCACGGTGTGCCAAAAGgtGTTCAAGAGTCATACGTCCTTATATCTTCACAGCCAAGTTGTTCACAAGAAAGATGGCGCGGAACACTTGTGCGATCACTGCGGTAAAGCTTTTCCGAACAAGTCCAAACTCCGCAGTCACATGACGGCGCTGCACAGCGGCGGCGCCCCCTACCGCTGCGAGTGGTGCCCCGCGCGCTTCAGCTGGCACTCCTGTCTCTCCAGACACGTGCGGCGTGCGCACGCGCGGAGGAAGCGGGACCAGTAG
Protein Sequence: MSTIVCCGCLNSDRKLTRVEEFWKSQYFTQIINEVMMSHQPSEPLHLCYECDALLTKFVKFKQRVKHSYSVLCDYSQKNINIIDPKPSVLTLNHNIYNIALLPDSNTEEETMQVVKHEVAPKIELDAIKEEDRVSVYSDHHEDDTPLTELKKKKKVKLKKDINKKIEMYREVELSLEELEEERRMLALKDEFVNAMFRCNTCIMSFPNADDLGDHVKMKHELHASHHKCKVCECSFGSEFSFNYHWSKHTRRYECCACALRCRSKRDAARHYDLAHCWGPEIPYNISKIDKNDGPEDSSRETYPCEFCHKTFKWKTSLRKHLETHKIEMGEKRKPYCEPCRLSFTTTSNLQKHVKTSSKHQMKLKLRKLQDNPSSVSEQQTPGAQAQAQAQYRCPHCERGFQWRGNLQRHLASHAARANGSLVCTPCNRTFSSIATFKQHMAISKKHVSEEDYKYMCSSCGKRFAIKSKLKDHIDWEHLKIYTHTCTVCQKVFKSHTSLYLHSQVVHKKDGAEHLCDHCGKAFPNKSKLRSHMTALHSGGAPYRCEWCPARFSWHSCLSRHVRRAHARRKRDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -