Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050492.1:475722-482156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0033 0.19 12.5 1.5 1 23 224 246 224 246 0.97

2 9 4.3 2.5e+02 2.7 0.1 3 23 271 292 269 292 0.89

3 9 0.00032 0.018 15.7 1.0 2 23 314 335 313 335 0.94

4 9 0.0014 0.08 13.7 0.7 1 23 339 361 339 361 0.98

5 9 0.0024 0.14 12.9 0.3 1 23 368 391 368 391 0.96

6 9 6.5e-05 0.0038 17.9 1.7 1 23 426 449 426 449 0.97

7 9 0.00017 0.0097 16.6 1.5 1 23 455 477 455 477 0.98

8 9 2.3e-06 0.00013 22.4 0.9 1 23 483 505 483 505 0.99

9 9 4.2e-06 0.00024 21.6 1.8 1 23 510 532 510 532 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0033	0.19	12.5	1.5	1	23	224	246	224	246	0.97
2	9	4.3	2.5e+02	2.7	0.1	3	23	271	292	269	292	0.89
3	9	0.00032	0.018	15.7	1.0	2	23	314	335	313	335	0.94
4	9	0.0014	0.08	13.7	0.7	1	23	339	361	339	361	0.98
5	9	0.0024	0.14	12.9	0.3	1	23	368	391	368	391	0.96
6	9	6.5e-05	0.0038	17.9	1.7	1	23	426	449	426	449	0.97
7	9	0.00017	0.0097	16.6	1.5	1	23	455	477	455	477	0.98
8	9	2.3e-06	0.00013	22.4	0.9	1	23	483	505	483	505	0.99
9	9	4.2e-06	0.00024	21.6	1.8	1	23	510	532	510	532	0.99

Sequence Information

Coding Sequence: ATGACTTCTCAACCAGCCCTCGTGAAACTCAAAGGCCCCATCTTGGACCCAGGGCTATGCCGTTGCTGcagatcaataaaaaaatgccgATTTTTGACTTCGGAATATGAGTGGACTGGGcgaaaagaaatttattccGACATGTTCATGGATTGTTTTGGTTTATTACTATCACACCTGGACGGAGACAGCAAGGAGTGTTGTATCTGTGCCACGTGCGTGTCCAGACTCCGCGACGCGTGCGCATTCAGGCAGCAGGTGCTTGCGTGTGAAGACGTGTTCTTACGCTCCAAGCTTGATATTAAAGATCTCGACGCAGATCTGGAGGTGGACCGCAAGCTGGAAGTGAAAGTAAAAGCGGAGCCTTGTGACCCGTCCGACACGCCTGGCGATTATACAGCTGACCATGACTCAGATAACAAACCGGAATCGGATGTGCCTGAGGTCAAAGTGAAGAAGATGCCGGTGAAGAAGGAGCTGCTGACGAAAATGAAGAAGTTGCGCCAAAAATTGGACCACAGACTGGACAACCAAGccctaaaaacaataaagaaagaaaaatcacTGTCGAAGCAACGACCAAATAATAATGACCGCATGATCTATTCAAACACAGTGACTATAGTGAAAAACTCTTACGTTTGTCCGTTTCTGAACAGAATAAGCAACTATTATTGTTTCTACTGTAAAGATCAGTTTACGAACCCCACAGAGTTAAGAGATCACACAATATCACACAATCCGAAAGACACATTCGAATCGAGCATggaaaacaagaaaatacCAAAAATCGACATAACGCGAATCGATTGTCGATTGTGCGAAATCAAAATCGACGATCTGACAACACTGAAGACTCACCTCGCCGACGTCCAcgggaaaataatatatccgATCGAAAATGagtttttgaaattcaaattgacATTAAACAATTTGTGCTGCACAGAATGTGGGAGTGTGTTCCCGTATTTCGATTCGTTGAAGAAACACATGATTGATCATTTCGGAACATTCGTGTGTGACATGTGTGGCGCGTGTTTCCTTGAGGCGACATCTTTAAGAACACACATAAAGTCGCACAATAAAGTAGAAGCAAGTTTCCCATGCGAGGTCTGTGGCAAAAAtctaaaaagtaaatacaGCAGATATTTACACATCGCAACGATACACGAGAAGAAGCCAACGGTAAACTGTTACAAGTGCGAAGCCAGTTTCCTGTCTCACGCGTTgagaaacaaacatttaatagAAGTGCACGGTGATAATCGAACGTTCCCATGTAAATTGTGTGACAAAGTGTACAATCGTAGGAAAACGTTAATGGAACACAACCGTAGGAATCATTTGAAAGTGTTTAAGCACCAGTGTGATTTGTGTGATCAAAAGTTTTACCTGCCATCGAGGTTGAAGGAACATATGGCCACGCACACCGGTGAGAGGAATTTCAGATGTGAATACTGTGAGAAGACCTATCCGAGACTGCAGTCGTTGCAGGAACATATACGATCTCACGGTGATaggaaatataaatgtgatttttgtaaTTCAGCATTCACACAAAATGGCAGTTTGAAGAATCATATGAAAAGCCATCAGCAAGGATACGATCTTGAAACTAGCTTtagttaa
Protein Sequence: MTSQPALVKLKGPILDPGLCRCCRSIKKCRFLTSEYEWTGRKEIYSDMFMDCFGLLLSHLDGDSKECCICATCVSRLRDACAFRQQVLACEDVFLRSKLDIKDLDADLEVDRKLEVKVKAEPCDPSDTPGDYTADHDSDNKPESDVPEVKVKKMPVKKELLTKMKKLRQKLDHRLDNQALKTIKKEKSLSKQRPNNNDRMIYSNTVTIVKNSYVCPFLNRISNYYCFYCKDQFTNPTELRDHTISHNPKDTFESSMENKKIPKIDITRIDCRLCEIKIDDLTTLKTHLADVHGKIIYPIENEFLKFKLTLNNLCCTECGSVFPYFDSLKKHMIDHFGTFVCDMCGACFLEATSLRTHIKSHNKVEASFPCEVCGKNLKSKYSRYLHIATIHEKKPTVNCYKCEASFLSHALRNKHLIEVHGDNRTFPCKLCDKVYNRRKTLMEHNRRNHLKVFKHQCDLCDQKFYLPSRLKEHMATHTGERNFRCEYCEKTYPRLQSLQEHIRSHGDRKYKCDFCNSAFTQNGSLKNHMKSHQQGYDLETSFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00652077;
90% Identity: -
80% Identity: -