Pint000965.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050464.1:1254215-1259219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.0076 16.9 0.6 2 21 216 235 215 236 0.94 2 17 0.8 47 5.0 0.5 2 23 241 261 241 262 0.91 3 17 0.082 4.7 8.1 4.4 1 23 267 290 267 290 0.90 4 17 0.76 44 5.1 1.4 2 20 296 314 295 317 0.94 5 17 0.41 24 5.9 6.1 1 20 320 339 320 340 0.95 6 17 0.0027 0.16 12.8 0.3 1 23 355 378 355 378 0.95 7 17 9.2e-05 0.0053 17.4 0.3 1 23 384 406 384 406 0.96 8 17 1.9 1.1e+02 3.8 0.4 1 23 440 463 440 463 0.87 9 17 0.017 0.98 10.3 2.1 2 20 584 602 583 604 0.91 10 17 0.00077 0.045 14.5 1.1 3 23 639 660 638 660 0.96 11 17 1.2e-05 0.0007 20.2 0.3 2 23 666 687 665 687 0.96 12 17 0.99 57 4.7 0.9 2 20 691 709 691 711 0.91 13 17 3.9e-06 0.00023 21.7 0.1 1 23 737 760 737 760 0.94 14 17 0.0022 0.13 13.1 0.5 1 23 766 788 766 788 0.94 15 17 0.081 4.7 8.1 0.1 1 23 794 816 794 816 0.97 16 17 0.13 7.6 7.5 0.6 1 23 822 845 822 845 0.79 17 17 0.09 5.2 8.0 6.5 1 23 851 874 851 874 0.96
Sequence Information
- Coding Sequence
- ATGGCGCTGACTGATACACTCCCAAATCAGCTCTGTTCAGGATGTGCCAAAAGTGTCACTTGCGTCATACCCTTCATACGACTTGCTAAAGATTCCTCCAAACGTTGGAACCAAATTACAGACTACCTTTATAAGTTAGAAGGCGCAAATACCAAAAGAAAGctgaagaaaagaaagaatgtGTATGTTATTATAGATGACGATCTACGAACGCAAATATGCACCAGGTACAAAGAAGCACCTAGGTGGCAAAGGCTGgaaaatttgaagaagaaCTTAAATAGAATGAAAACTCAGAACTTAGAGGGAAAGAAATGCATTAACGCACAAGTGGACGAGGACAGCGGTGTGCCAGGAGGGATTTGCAAGGCATGCCTGCAGGACGCCATGGCTTCCTTTCGCTTCAGGCAACTCGTGAGAACCTCAGCTGATTACTGGGAAAATTCTACATCATTCCTCACACATGTCCACGACCCGACAGAACACGACAAGTCTTATTTCATCTTCTACGCGCCGGACAACAAATCAGTAATGGTAGTAAAAGATCAAGCACAAAGCGCTAAGAACACAGACGAAGCTTTGCTACGACTTGTAGACTTTCGACGACCTCAGCGCAAAccgaaaaatatatcattgttTGACTGCTCCTGTCCTGATTGCGGGAAAAAGTTCAACGGACCGCTACTTTTGAATAAACATCTTAGGAATACTTTGAAAAGAGTTTGTAACGAATGCGGAGAAGTTATGTTGAAAGCTAAACTGGCCTCGCACATGTTGAAACATCACGAAATCGAAGTCTTTAGCTGCTCAATATGTCATAAGATTTTCAATGACACCAAAAAAATGAAGCTACACTCTTTTAAAAGTCATAGTAATAGAGATACCCAGTGTGATATATGTAAAAACGGCTTTGATTCTGTTAGGTCACTGAACGGGCACATGTACTGTCATTCTCTGTTCCATTGTAACAAATGCTCGAAAAGTTTCGACAGCCTCAAATGCTACCGGTACCATCAAGGCCAATGCAATCCCAGTAAAGACAAAACtgatcataatataaaatatacttgcGATTATTGTGGCTCTTCTTACGACTTAAAACCATCGCTGCGTATCCACATAATACAAAAACACTTGAATGTTTTACCTTATGTTTGTGAACTTTGTGGTAAACGAGCATCGACCAAAGCACATCTGCGATCACATGAAGCTGTTCACACGCAAAAGAGAAAGATATATGAATGTCATTGCGGTGCGAGGATGCGAACAGAGCTTGGTTTCCAGATGCACCAGCGTATCCATACTGGTGAGAAACCTTACGAATGCGACGAGTGTGGTGACAAGTTTCTGTCCGCTTCCAGAAGGTTGGACCATATAAAACGTAGACATAGAAGTATTAAGGAAATGCCGCACGCGTGTGACAAATGTCACGCGAGATTTGTGCTCGATGAGCCGCTTTGTCCGATCGGTATCTGCATCACATGCGTGGCCCACGTGCTCGCCGCCCAAGAATTCAGGATCTTTGTGAAAAACTCGCAAAAACTATGGTCGAAAGCCTTGTCTTCCCTCCATGGCCTCCCCGAAGGAGCGTCTCCACCAGTAAAAACTCTATGCGCTTTTATCAAACCCGACACTTTAGCTTTACATacgtataaaaattatacaggaGGTGATTCCAAAACtgtgttgaataaaataaaaagtcgtCTCACCAAGAAAAAACGTGTCGTGAGAACCGGCCCGCCTTGCGAGTGTCCAGATTGTGGGAAACATTTTCTGAGTCCACATTATCTCAGCATGCATCTGAGTAATAGTGGCCAAAAAGAAGTATGTGCCGTTTGTGgattaattgtttttagagGGAGAGACACGGTGAAACATATGGCCGAAGCCCATGGACAAAATGTTAGTTTATGCAAATATTGCCctcaatttttcaaaaatgaattACAATTGAAAAAACATGTGAAAAATGCGCATAGGCTTAGTGCGTTAACATGTAGCGATTGCGGACGAACATTCCCGAGAAAGGCGTCGTTCGAAGCTCACTCGCAGATGCACGCGGTGCGGACTTGCCGCGCGTGCGGCGCTCAGTTCACCAACCGGGCGTGTTACCGGGAACACAGGGCTAAGTGTGAGCCTGACGCGAAGCCCGATGTCAAATCTTTACCACGAAACAAACGCTGCAACGTCAGAGACCCGGCTTACTTCATATGCGACTATTGTGGAAAGGTTTACACGTCGCGACCTCAGCTGAAGAATCATATAATATGGATTCACATGAACGTGCGCCCTTATCAATGCACTTATTGCGAGAAAAGATTTTATACTGCGGGTAGGATGGCAGAACATACCGTAGTGCATACGCGCGAAAGAAATTTCGAATGTGATATTTGTGGTGCGAAATTAGTTTCCAAAATGGCTGCCGTTTACCATAGACGAAGGCACACGGGGGAAAAGCCCTACGAATGTAAAGATTGTGGCGAAAAGTTTTTATCTGCGTCGCGGAGGTCTGAGCACGCCAAGCGCAGACATGGGAAGGGAATCAGACATCAATGTTTGCATTGTCCAGCTAATTTCGTCAGGACGTGCGATTTGAAGAAGCacacagaaaaatatcataatacgCCGCAGAATTTTATGGTTGCGGTCGAAAGTTAG
- Protein Sequence
- MALTDTLPNQLCSGCAKSVTCVIPFIRLAKDSSKRWNQITDYLYKLEGANTKRKLKKRKNVYVIIDDDLRTQICTRYKEAPRWQRLENLKKNLNRMKTQNLEGKKCINAQVDEDSGVPGGICKACLQDAMASFRFRQLVRTSADYWENSTSFLTHVHDPTEHDKSYFIFYAPDNKSVMVVKDQAQSAKNTDEALLRLVDFRRPQRKPKNISLFDCSCPDCGKKFNGPLLLNKHLRNTLKRVCNECGEVMLKAKLASHMLKHHEIEVFSCSICHKIFNDTKKMKLHSFKSHSNRDTQCDICKNGFDSVRSLNGHMYCHSLFHCNKCSKSFDSLKCYRYHQGQCNPSKDKTDHNIKYTCDYCGSSYDLKPSLRIHIIQKHLNVLPYVCELCGKRASTKAHLRSHEAVHTQKRKIYECHCGARMRTELGFQMHQRIHTGEKPYECDECGDKFLSASRRLDHIKRRHRSIKEMPHACDKCHARFVLDEPLCPIGICITCVAHVLAAQEFRIFVKNSQKLWSKALSSLHGLPEGASPPVKTLCAFIKPDTLALHTYKNYTGGDSKTVLNKIKSRLTKKKRVVRTGPPCECPDCGKHFLSPHYLSMHLSNSGQKEVCAVCGLIVFRGRDTVKHMAEAHGQNVSLCKYCPQFFKNELQLKKHVKNAHRLSALTCSDCGRTFPRKASFEAHSQMHAVRTCRACGAQFTNRACYREHRAKCEPDAKPDVKSLPRNKRCNVRDPAYFICDYCGKVYTSRPQLKNHIIWIHMNVRPYQCTYCEKRFYTAGRMAEHTVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYECKDCGEKFLSASRRSEHAKRRHGKGIRHQCLHCPANFVRTCDLKKHTEKYHNTPQNFMVAVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -