Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050492.1:2624322-2625323[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0014 0.082 13.7 1.5 1 23 10 33 10 33 0.95

2 10 0.0087 0.5 11.2 0.2 2 23 59 81 58 81 0.93

3 10 0.92 54 4.8 1.0 2 23 104 126 103 126 0.87

4 10 7.7e-05 0.0045 17.6 0.3 3 23 134 155 132 155 0.97

5 10 0.00014 0.0083 16.8 0.3 2 23 160 182 160 182 0.97

6 10 0.38 22 6.0 0.1 2 23 188 210 187 210 0.87

7 10 0.35 21 6.1 1.0 1 12 217 228 217 240 0.73

8 10 8.5e-05 0.0049 17.5 0.6 1 23 246 268 246 268 0.94

9 10 3e-06 0.00017 22.1 1.1 1 23 274 296 274 296 0.99

10 10 9.4e-06 0.00055 20.5 0.6 1 23 302 324 302 325 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0014	0.082	13.7	1.5	1	23	10	33	10	33	0.95
2	10	0.0087	0.5	11.2	0.2	2	23	59	81	58	81	0.93
3	10	0.92	54	4.8	1.0	2	23	104	126	103	126	0.87
4	10	7.7e-05	0.0045	17.6	0.3	3	23	134	155	132	155	0.97
5	10	0.00014	0.0083	16.8	0.3	2	23	160	182	160	182	0.97
6	10	0.38	22	6.0	0.1	2	23	188	210	187	210	0.87
7	10	0.35	21	6.1	1.0	1	12	217	228	217	240	0.73
8	10	8.5e-05	0.0049	17.5	0.6	1	23	246	268	246	268	0.94
9	10	3e-06	0.00017	22.1	1.1	1	23	274	296	274	296	0.99
10	10	9.4e-06	0.00055	20.5	0.6	1	23	302	324	302	325	0.96

Sequence Information

Coding Sequence: ATGCCTTTTCGATGGTGcagtaacaaatacatgtgtttCTACTGCCGATGTCCTTTCTCCTCCAGTGTCGCCCTCAAGGAACACACTGCAAGCGAACACGACAACCCCAGACTCAAATACATACTACAAACCATTAGAACATcgtcaaaaatcaaattggaCGTGACAGAAATTGTAtgcaaaaaatgtaacaagAGCTTAGAGAATTTGATGGAGTTCTTCGATCATTTAAACGCGGTTCATGACATGAAGTTGAACAGAGATGTTAGCGTCTACATGTTCGCGTACAAACTTTCAGATGATGGCATGTCTTGTCTGGATTGTGGACAGAAATTCCTCTTTTTCGGCACTCTTATTAGTCACGCCCACAAACTTCATACTAAAACCGAAATGTGTCTATGTGAGATTTGTGGTCAAGCGTTTTCTGGAAGAGCCAACGTCATGAACCACGTTAGAACTGTGCACAGAATCGACAACAGATGTAATAAATGCTACAGGTCATATTCTTCTGAAGCCGCGTTGGCTGCTCACACGCGACGGGTACATCGTCAAGATAAACTAAAATGTCCGAAGTGTCCAGAGATATTACGAACTACATACATAAGGCAGCGGCATATGGCGTTGGTTCATGATGTTAAGAAGTATCAGTTTAGCTGTGATATATGTGCGAAGACGTTCACATGCTTGAGCGTGGTGGCTCAGCACAAAGCTAGAATGCACATGAAGGAGAAAAATTTCGCGTGCGAAATATGTGGATTTAAAGTGTTCAGTAAAGATTTGTTGAAAAAACATATGGTGAAGCACGATGACTCCAGGCCCTTTCAGTGCGAGATTTGTAAGAAAGCGTTCCAAAGAAAGAAGACTTTGGATCTGCATATAAGGATTCATACGAATGATAAAAGATATGTGTGCAAAGTTTGTGGGAAGGCGTTTATACAGGTCACCAGTTTGAAGCTGCACGGTAAGGTGCATCATTCCGTGCCGGATGTATCATGGAGTTGA
Protein Sequence: MPFRWCSNKYMCFYCRCPFSSSVALKEHTASEHDNPRLKYILQTIRTSSKIKLDVTEIVCKKCNKSLENLMEFFDHLNAVHDMKLNRDVSVYMFAYKLSDDGMSCLDCGQKFLFFGTLISHAHKLHTKTEMCLCEICGQAFSGRANVMNHVRTVHRIDNRCNKCYRSYSSEAALAAHTRRVHRQDKLKCPKCPEILRTTYIRQRHMALVHDVKKYQFSCDICAKTFTCLSVVAQHKARMHMKEKNFACEICGFKVFSKDLLKKHMVKHDDSRPFQCEICKKAFQRKKTLDLHIRIHTNDKRYVCKVCGKAFIQVTSLKLHGKVHHSVPDVSWS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00652062;
90% Identity: -
80% Identity: -