Pint017525.2
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- Znf296_1
- Assembly
- GCA_027563975.2
- Location
- CM050491.1:2279213-2284797[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00074 0.043 14.6 1.5 1 23 252 275 252 275 0.93 2 11 0.0073 0.42 11.4 1.3 2 23 283 305 282 305 0.91 3 11 4.9 2.8e+02 2.5 0.1 1 23 309 332 309 332 0.92 4 11 0.62 36 5.4 6.1 1 23 336 359 336 359 0.94 5 11 2.2e-05 0.0013 19.3 3.2 2 23 363 384 362 385 0.94 6 11 2.4e-05 0.0014 19.3 2.5 2 23 389 411 389 411 0.96 7 11 0.012 0.72 10.7 0.2 3 21 426 444 425 449 0.92 8 11 9.5e-05 0.0055 17.4 0.0 2 23 458 480 457 480 0.91 9 11 0.0022 0.13 13.0 6.4 1 23 486 509 486 509 0.96 10 11 0.00028 0.017 15.9 1.1 3 23 520 540 519 540 0.98 11 11 9.5e-05 0.0055 17.4 0.5 1 23 546 569 546 569 0.98
Sequence Information
- Coding Sequence
- ATGTACTCAGTGAAAGTAGAATTGAACAAAAATGACGTCTGTTATGGGTGCTTAAGCTCCAATCGGCAATTGAATATATTGAAGTGTCATGTGCCTTTATTCTACACATTACTAGAACAACAAGTGGGTAATGCCAAAATTTTACTCTGCTGGGAATGTAAAGCCATTTTGGAGAAGATATGCAAGTTTAAAAAGCGAATCCAACGGGCTCAGCATGTACTCCAACAAACATATTTCACTGTGCATGAGACACAGGAAAAATTATCAACATTGTTGATCACGAGAAAAGATTCCTACGATCGCATGATATGTTATGACGAGAACCAATCAAAACCGTGTGACACAGAACTAGAATATGAAGTTCCAGTGGAGTTAGCCAATAtcattgaagaaaataatgaaacagaTGTGAATATCAAAGAAGAGTTAGTTGATGATCTATatgatgatttaaaatttgaaaatgataGCACAGAGGGAACTGATGTCAGTACGCGGCCAACTAGAAAGTGTCAGCAAGAGAGAAAAATGTGCGaagaaaatattgatgtaGATTATAAACCACCAATATTGGAGAGAAAAGAGTCGAATTATTTTGCAAGATATATGGATAAGGTGACAATAAGTAATGGGAATGTTGACGAGGATATAAAAAGGTATTGTGGGAGGCTCACGTTGCAGGTAGATCAGATCGACGAGTTGCTGGAGAAAGAACAGCTTGAAAACCGTCCGGGAATGAAGCGTGATCGACCATACAAGTGCAAAGAATGTACAATGGCATACAGACGGGACATTGACCTTAAAAGACATATTACTTTCAAACATATGGATCGTACTGGCAGAGTTGTATGTAAACAATGCAAAAAATCATGTTCGGACTGGCAACTGTTGGATGATCATTGGTCGCAATAccataacaaatatttcaaatgcaTTCTGTGTGGGTTTACCTCGCCGTCGAACAAAGCGGTCGTGTATCATATTGATTCTGCGCACACCAAAAAATTTATGTGTAACACATGCAATGATCAGTTTTGTACGATGAAGCAGTTTAAGAAGCATTACCAGGCGAAGCACGAACGTCTGGTCTGCGACGATTGCGGGAAGACTTTCATCAAGAGGAAATCGTTCGAAACTCACTACAAACGTCACCACATGCCGCCTACGTGCGAGGTCTGCAACAAGACGTACTCAACATACCACAACCTCGAGAACCACTACCGTCTGAACCACCCGGAGTTCATAAACTGCGAGAACAGACAAGAACTGGCGTATTGCGTGGAGTGCAACAAACaattccctagtgtgtataaATATAGGAGACATTTGACGAGTGCAGCGGTACACACGCCGCCGAAGGTTGAGATCGTGCCGTGTCCGGAATGCGGCAAGGTGTTCTCTAGAAAGATCCGAATGACCAACCACGTGTTGGCTGTGCACAGGAAGAACACGAAACACAGATGTGATATTTGCAATAAGACATTCTGCTCAGCGTATTCAGCTAAGACCCACAGGAAGTACACACACGAGAAGGAACAAAAGCCGAAGAACAAATTCTGTGATATATGTGGCAGGGGATTCAATACGAATCGAATTCTAAACAACCACCGCCGCACGCACACCGGCGAGCGGCCGTATTCGTGCCCGCACTGCCCGGCCACGTTCGCGCAGAGGGTCGCCATGCGCACGCACGCCAAAACGCAGCACAAAAACTTGCTCCTCGACGCCGCGAACCAAGTTATTAATGGTGGAATCTTGCCTTAA
- Protein Sequence
- MYSVKVELNKNDVCYGCLSSNRQLNILKCHVPLFYTLLEQQVGNAKILLCWECKAILEKICKFKKRIQRAQHVLQQTYFTVHETQEKLSTLLITRKDSYDRMICYDENQSKPCDTELEYEVPVELANIIEENNETDVNIKEELVDDLYDDLKFENDSTEGTDVSTRPTRKCQQERKMCEENIDVDYKPPILERKESNYFARYMDKVTISNGNVDEDIKRYCGRLTLQVDQIDELLEKEQLENRPGMKRDRPYKCKECTMAYRRDIDLKRHITFKHMDRTGRVVCKQCKKSCSDWQLLDDHWSQYHNKYFKCILCGFTSPSNKAVVYHIDSAHTKKFMCNTCNDQFCTMKQFKKHYQAKHERLVCDDCGKTFIKRKSFETHYKRHHMPPTCEVCNKTYSTYHNLENHYRLNHPEFINCENRQELAYCVECNKQFPSVYKYRRHLTSAAVHTPPKVEIVPCPECGKVFSRKIRMTNHVLAVHRKNTKHRCDICNKTFCSAYSAKTHRKYTHEKEQKPKNKFCDICGRGFNTNRILNNHRRTHTGERPYSCPHCPATFAQRVAMRTHAKTQHKNLLLDAANQVINGGILP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -