Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050492.1:3964810-3969177[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0029 0.17 12.7 0.1 1 23 201 224 201 224 0.91

2 10 0.033 1.9 9.4 0.1 2 23 249 271 248 271 0.94

3 10 0.0018 0.1 13.3 1.0 1 23 294 316 294 316 0.98

4 10 4.5e-07 2.6e-05 24.7 1.0 1 23 320 342 320 342 0.99

5 10 0.017 0.96 10.3 5.7 1 23 347 370 347 370 0.96

6 10 0.003 0.17 12.7 1.4 3 23 379 400 378 400 0.95

7 10 8.8e-06 0.00051 20.6 0.8 1 23 406 429 406 429 0.98

8 10 7.6e-05 0.0044 17.7 3.3 2 23 436 457 435 457 0.96

9 10 1.6e-05 0.00093 19.8 1.8 1 23 463 485 463 485 0.97

10 10 0.014 0.8 10.6 0.4 1 23 491 514 491 514 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0029	0.17	12.7	0.1	1	23	201	224	201	224	0.91
2	10	0.033	1.9	9.4	0.1	2	23	249	271	248	271	0.94
3	10	0.0018	0.1	13.3	1.0	1	23	294	316	294	316	0.98
4	10	4.5e-07	2.6e-05	24.7	1.0	1	23	320	342	320	342	0.99
5	10	0.017	0.96	10.3	5.7	1	23	347	370	347	370	0.96
6	10	0.003	0.17	12.7	1.4	3	23	379	400	378	400	0.95
7	10	8.8e-06	0.00051	20.6	0.8	1	23	406	429	406	429	0.98
8	10	7.6e-05	0.0044	17.7	3.3	2	23	436	457	435	457	0.96
9	10	1.6e-05	0.00093	19.8	1.8	1	23	463	485	463	485	0.97
10	10	0.014	0.8	10.6	0.4	1	23	491	514	491	514	0.94

Sequence Information

Coding Sequence: ATGGAGCTCCCCCAGACCTGCCGTTGTTGCCTGTCCGCAGGCGCGCACAGGGACCTGAACACCTCCTACCTGTGGCTGAACAAAAAGGAGGTCTATTCGGAGATGCTTCAAGAATGCTTCAATATTGTGCTGAGTGTGACCCCGCGGAGCAGCGCCATCTGCGAGGCGTGCGTGCAGCAGCTGCGCGGCGCCTGCGCCTTCCGCCAGCTCGTGCTGCACAGCGAGGAAGAGCTGCGCTCCGCCGGCCGCCAGCACGATGTGAAGCCGGAGCCGGAAGTGAAACTGGAGCCAGAGGACGACTCCGACGACTACTTCTTGTCTGAGGCCGTTTCAGCGAAAGACGTGGCCGTGGAGAATGTGAAGGTGGAATGCGAAGCGCCCGCGCGCAAGAAGAGGAGGGCGAGGAAGAGAGAGCGAGAGGAGAAGACGTCGGGCAAACTCACGACTGCCGCGGACTTGACCGCGAAGAAGGGCCGCAAAGCCAGCGAAGCCCCTCGCTGGGGCTCCAGCAGCCAGCTCAAGGCCAAGCTCCGCCACAACCTGTCCGCGGTGCTGCAGGCCTCCAACGCGCTGCCCTTCCGCAACAAGACCCTGGTCGGCTACCAGTGCGCGTACTGCGACAACTCCTACCCCGACCCGAGGGACTTACGGGGACACACCGACGCCGACCACACAGCGCAACGTCTAGAACACAAAGTGACCTTCGACTTGGAATACGGCGTCAAACTGGACATCACGGACCTGAAGTGCACCATATGCGACGAGAGCATGGAGAACCTGGCGAAGCTCAAGGAGCACCTGGTCAAGGTTCACGGGAAAACCATACATGAGGACGTCAAAGACCACCTGCAGCAGTTCAAACTGAAGAAGGGCGAGGTGTACGACTGCGCGATGTGCTCCGCCACGTACGAAACGTTCAAGATGTTGAAGCAGCACATGAACAAGCATTACAGGAACTACACGTGCAGTGACTGTGACACTTCATTCGCCACCAGGCGATCCCTGAACGCGCACCGGATGACGCATCAGGAAGGCAGTTTCAAGTGTGATTTCTGTGACAAAGTGTTCGcgaataaaactaaaaagcaTTACCACGAAAAGACTAAACATTTGGGCAACCGCAGCATCGCGAACTGCCCGTTCTGCAACGAGTCGTTCCGCAGCTACTACCAGCGGAACCAGCACCTCACCAAGGTGCACAACTCGGAGACGCCGTACAAGTGCAACGTGTGTGACAAGGTGTACGCGCTCAAGTCGCTGCTCATGTACCACATCAAGAAGAGCCACCTCATGGAGAGGAACTGCCAGTGCACGGAGTGCGGCTTCAGGTTCTTCAGCAAGAAGGCGCTGAAGGCGCACATGGTGAAGCACTCGGGCGAGCGCGCCTTCGCCTGCGACGTCTGCCACAAGGCCTACGCCAGGAAGTACACGCTGCGCGAGCACAAGCGCATCCACGCGGACGAGCGCCGCTTCCGCTGCGCGCGCTGCGCGCTCGGCTTCGTGCAGAAGTGCAGTCTGCGCGCGCACCTGCTCGCCGCGCACGGGGTCTCCGCCGCCGCGCGCGACATCTCCGCCCTCACATAA
Protein Sequence: MELPQTCRCCLSAGAHRDLNTSYLWLNKKEVYSEMLQECFNIVLSVTPRSSAICEACVQQLRGACAFRQLVLHSEEELRSAGRQHDVKPEPEVKLEPEDDSDDYFLSEAVSAKDVAVENVKVECEAPARKKRRARKREREEKTSGKLTTAADLTAKKGRKASEAPRWGSSSQLKAKLRHNLSAVLQASNALPFRNKTLVGYQCAYCDNSYPDPRDLRGHTDADHTAQRLEHKVTFDLEYGVKLDITDLKCTICDESMENLAKLKEHLVKVHGKTIHEDVKDHLQQFKLKKGEVYDCAMCSATYETFKMLKQHMNKHYRNYTCSDCDTSFATRRSLNAHRMTHQEGSFKCDFCDKVFANKTKKHYHEKTKHLGNRSIANCPFCNESFRSYYQRNQHLTKVHNSETPYKCNVCDKVYALKSLLMYHIKKSHLMERNCQCTECGFRFFSKKALKAHMVKHSGERAFACDVCHKAYARKYTLREHKRIHADERRFRCARCALGFVQKCSLRAHLLAAHGVSAAARDISALT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -