Pint017308.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050491.1:80367-87301[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00033 0.019 15.7 3.0 1 23 242 265 242 265 0.95 2 13 0.00016 0.0093 16.6 3.2 1 23 272 294 272 294 0.96 3 13 0.87 50 4.9 3.5 1 23 298 320 298 320 0.97 4 13 0.00076 0.044 14.5 3.8 1 23 325 348 325 348 0.96 5 13 0.068 3.9 8.4 0.2 3 23 355 376 355 376 0.95 6 13 0.092 5.4 8.0 0.1 3 19 386 402 385 405 0.94 7 13 3.7 2.1e+02 2.9 1.8 1 20 442 461 442 463 0.91 8 13 0.15 9 7.2 0.0 3 23 467 488 466 488 0.92 9 13 4e-06 0.00023 21.7 1.2 1 23 491 513 491 513 0.94 10 13 8.1e-05 0.0047 17.6 2.3 3 23 573 593 572 593 0.96 11 13 1.3e-05 0.00073 20.1 0.3 1 23 599 621 599 621 0.98 12 13 7.7e-06 0.00045 20.8 0.9 1 23 627 649 627 649 0.97 13 13 0.00084 0.049 14.4 0.7 1 23 655 678 655 678 0.94
Sequence Information
- Coding Sequence
- ATGCAACAAGATCCCGTGTGTCGAGGCTGCCTGGCCACCGACAGCAAGTTCTCCGGCCTCCGCGACTTCCACACCGCCCAGGCTTATGAGAGTCTTCTAGGCATTCCGCTCCGGCTGCCGGATGGGTTCCCGGAGCAGCTATGCTCTTTCTGTACGAGGTCTGTGCACAAGTTCACAGAGTTCAGGCTGCGGTGCCTCAAGGCAATGGAGGTGCTGCATCTGGCACGGATGGAAGGCAGATTGGTAGCAAGAGAATATGTTAATTCAGTAAGATCAAATCATCCCGAGCTGAGACCTCGGTACACTCAAACGGAAACATACACGTCGGAAATTCTCAAACAAGATGAAGATGACCTGTTGAATTCCATGGGCACTTTCATAGCTCTGGATATCGAAAAGGAAGATGCGTTAAGTGACACTAACCACGCAGATATAGAACCAAAACTTGAATATGACGATATAAAAGTGATGCCTTACGAAATATTCGTAGAAGATGTCAATataagaaagagaaacaatataagaaaaaaaccaaaacgtaaaataaggaaaagtaaagtaaaggaagtcaagaaattaaaaaagaagacCAAGAAACGGAAATCTGATAGGGATATTGTAATAGACTATGCTAGATCAGCCGGCTTCGACATAACCTTTTTATCTCAAGAAGAGCAGATAAAAGAAGTGGAAACAAGAAAGAATGAGAAGGTCTCAAGCGGGCACAACTGTCCACAATGCGGGAAACATTATGACAATGCAAACGCATTGGAACGACACAAGAAAAACTATCACGTGTTAAAACCTGACTTTTTCATGTGCGATATATGTTCTTGtgtgtttaaaaacaaaagaacgTTACGGTCCCACATGGTGAATCACAGTTGGGTGTTCACGTGTCTAACGTGTAGTTTCAAGACTAAACAGCGACCGGTTTTACGGAAACATAGGCAGTTTCATGAAGGGAAAAAGTtttcttgtaaatattgtGAGAAGGAATTCACAAAATCTACGACATACTTCACTCATGTGCGGTTGAGGCACGCGTGCGAGCTCTCGTGGTGTGATTTGTGCGGGGAGTTCTTTATCAGTGCGAAGGGAGTGGAGAATCATAAGAATCTCAGCCACAATATGGCCGAGGAGTTTCCCAGCGCTTGTAGGAAGTGCGAGAAGAGGTTTCAAAGCGACGAGGCGTTGGAGAGACATGCAGTTGTTAACGGCTGCGGCCGGCCGAGCTGCGCGCGCTGCGGCGACGCGTTCCTCGACGACGAAATCCTGAAGCACCACCTCGTGCAGCGGCGCGAGTGCGCGGCGGCCGAGCGCCACGAGTGCGGGCGCTGTCGCATGCGCTTCCACAGCGCGAGTGCGCGCGCGCGGCACGAGTGTGCGCGCGCGGCGTGCGCGGCGTGCGGCGCCGCGTGCCGCGACCGCCGCGCGCTGCTGGCGCACGTGCGCGCGGCGCACGATATCTTCACGTGCGGACAGTGCGGCAAGCGCTTCTCCAACTCAGCTTATCTCCGGCGTCACTTCGCGCTGCACTCGCACGCGAACGAACGCGCGGGCAGACAGTGCGGACAGCCCGGGCAGTACAAGAAGTACCCGGGCGGGCTGACGGCGCTGCGCGCGTGGCGCGTCGAGCGCGAGCGCGTCGCGCACGAGCGCGTCGCGCCCGACGGCCGCGCGCTGCGCCGCGACGAGCGCGATCTGCCCGCTATGTGCGAGCTCTGCGGGAAGAAGTTCCGGaaCATGACGCAACTGAAAACCCACCAGCAGTTCCACTCGACCGAGAACCAGTTCTCGTGCTCAGTCTGCCCCAAGGGGTTCAAGCAGCGCGCGCAGCTGCTGATGCACGAGCGAGTGCACACCGGCGAGCGGCCGTACAAGTGTCCCGAGTGTCCGAAAGCGTTCAAGACGTACCAGGCATACACTAGACACTTTTTGATCCACTCGGGCGTGCGCAAGCACGTGTGCCAGCAATGCGGCAAGTCGTTCCAGACGTCGACGGCCGCCAAAGCGCACGTCACCAGCGTGCATCTGCGCATGCGCGCGCCCAGgctgcgccggcgccgcgGCGAACTACTgtctcaataa
- Protein Sequence
- MQQDPVCRGCLATDSKFSGLRDFHTAQAYESLLGIPLRLPDGFPEQLCSFCTRSVHKFTEFRLRCLKAMEVLHLARMEGRLVAREYVNSVRSNHPELRPRYTQTETYTSEILKQDEDDLLNSMGTFIALDIEKEDALSDTNHADIEPKLEYDDIKVMPYEIFVEDVNIRKRNNIRKKPKRKIRKSKVKEVKKLKKKTKKRKSDRDIVIDYARSAGFDITFLSQEEQIKEVETRKNEKVSSGHNCPQCGKHYDNANALERHKKNYHVLKPDFFMCDICSCVFKNKRTLRSHMVNHSWVFTCLTCSFKTKQRPVLRKHRQFHEGKKFSCKYCEKEFTKSTTYFTHVRLRHACELSWCDLCGEFFISAKGVENHKNLSHNMAEEFPSACRKCEKRFQSDEALERHAVVNGCGRPSCARCGDAFLDDEILKHHLVQRRECAAAERHECGRCRMRFHSASARARHECARAACAACGAACRDRRALLAHVRAAHDIFTCGQCGKRFSNSAYLRRHFALHSHANERAGRQCGQPGQYKKYPGGLTALRAWRVERERVAHERVAPDGRALRRDERDLPAMCELCGKKFRNMTQLKTHQQFHSTENQFSCSVCPKGFKQRAQLLMHERVHTGERPYKCPECPKAFKTYQAYTRHFLIHSGVRKHVCQQCGKSFQTSTAAKAHVTSVHLRMRAPRLRRRRGELLSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -