Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050492.1:2598246-2606482[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.48 28 5.7 1.5 1 23 231 253 231 253 0.95

2 16 0.00016 0.0095 16.6 0.3 2 23 282 304 281 304 0.96

3 16 0.044 2.5 9.0 0.1 2 23 325 347 324 347 0.94

4 16 0.0014 0.081 13.7 2.0 3 23 354 375 352 375 0.96

5 16 0.00017 0.0098 16.6 1.5 1 23 380 403 380 403 0.97

6 16 0.087 5 8.0 0.3 2 23 406 428 405 428 0.95

7 16 0.024 1.4 9.8 1.1 2 22 435 455 434 455 0.94

8 16 0.012 0.67 10.8 0.5 1 23 512 535 512 535 0.94

9 16 0.069 4 8.3 0.1 3 23 564 585 562 585 0.90

10 16 0.0001 0.0059 17.3 0.3 2 23 608 630 607 630 0.96

11 16 0.0011 0.064 14.0 0.5 3 20 637 654 635 658 0.90

12 16 0.073 4.2 8.3 0.4 1 23 663 686 663 686 0.96

13 16 0.00018 0.01 16.5 0.5 2 23 692 714 692 714 0.94

14 16 9.4e-05 0.0055 17.4 4.7 1 23 718 741 718 741 0.97

15 16 0.0011 0.061 14.1 0.5 2 23 748 769 747 769 0.95

16 16 0.15 8.4 7.3 4.5 1 23 775 797 775 797 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.48	28	5.7	1.5	1	23	231	253	231	253	0.95
2	16	0.00016	0.0095	16.6	0.3	2	23	282	304	281	304	0.96
3	16	0.044	2.5	9.0	0.1	2	23	325	347	324	347	0.94
4	16	0.0014	0.081	13.7	2.0	3	23	354	375	352	375	0.96
5	16	0.00017	0.0098	16.6	1.5	1	23	380	403	380	403	0.97
6	16	0.087	5	8.0	0.3	2	23	406	428	405	428	0.95
7	16	0.024	1.4	9.8	1.1	2	22	435	455	434	455	0.94
8	16	0.012	0.67	10.8	0.5	1	23	512	535	512	535	0.94
9	16	0.069	4	8.3	0.1	3	23	564	585	562	585	0.90
10	16	0.0001	0.0059	17.3	0.3	2	23	608	630	607	630	0.96
11	16	0.0011	0.064	14.0	0.5	3	20	637	654	635	658	0.90
12	16	0.073	4.2	8.3	0.4	1	23	663	686	663	686	0.96
13	16	0.00018	0.01	16.5	0.5	2	23	692	714	692	714	0.94
14	16	9.4e-05	0.0055	17.4	4.7	1	23	718	741	718	741	0.97
15	16	0.0011	0.061	14.1	0.5	2	23	748	769	747	769	0.95
16	16	0.15	8.4	7.3	4.5	1	23	775	797	775	797	0.97

Sequence Information

Coding Sequence: atggagTTTGACGAGATAGTTGTGAAGGAGAGCCCGGGACTTTGCCGGTGTTGTCTCTCCGAAGGCTGTTATAAAGACATGGGCACGGAGTATACATGGATGAATGAGAATGAAGTGTACGCTGATATGCTATTAGAATGCTTCGACATTGGGattTCCCAGCATAATGATGGACCCAATGGACCTACCCGACTTATTTGTGAAGTCTGCATTACAAGACTGCGGGACGCTTGTAACTTCAAAAAACAAGTGCTGGACTCCGAAAAGAAATTCATTGATATGATCGGCAGAGGCGAATTTCAGGCAAAAGTACTAATCTACCCGTCCCAAATGAAGTCAGAAGTTGAAGATCCAACGGGCCAAGAAGTGGAGTATTTGGATGATGATGACATGGATTTTGGTGATGacGAGCCTCTAAAGCGCCCTGAAGAGCCTACTCTGTCAGACATCACAGTGTCTTCCCTCCCGGTGAAGAACAAGCGAGGCAGGCCCAAGAAGGCAGTTGTCAAAACAGAGAAGAAGGCCAAAGTTGCCAAGCTGGAGGAGAAAGCAAAGTCTTCCAAATCAATTGTTAAAGATAAAAAGCCCCGGAAATTTAAGAGCTGCGAATCTTCCTCGGTGCGCAGGCGCAGGAACCTCCAAATCATATTCAACAACACCGCGATCATACCCTTTAAGTGGAGGGGGAAGTACCTATGCTTCTATTGCAGCAAAGACATGGCCGAATATACAGAGCTCAGGAAACATACAAAATCTCATGGAAACTGTTCCACACAAGACCATTCCTTAAGAGTACTAAAAGGCGGTAATAATATGGAAATCAAAATCGACGTATCGGACATCACATGCGAGATTTGCAACGAACCATTTTCAGATTTCGATGAATTAATCACACATTTGTGCGTGAAACACCAAGTAGAATATGACAGGGAGGTTGACATGTACATAGAGAAGTACAGACTCGTGGATCTCACGTGTTTAGTTTGCGGTGAAAAGTTCGCTTATTTCGGCTTTCTAGTGTCCCATGTTAACAACATGCACCCAAAAAACTGCTTACTATGCGACAAGTGTAATCAGAAATTTAATAAGAGCAGAGATTTGTTTTCCCATATCAAGAATTATCACAGGGAGGGCGGGTATAAGTGTGACAAATGTCCCCAGAGTTTCAGCTCCTTGAATATTCTACGTAAACACATGAACAATAGACATCTAACGAGCTGTAATGTATGCCAGTTGAAACTATCGTCTGCagctttaaaacaaaaacatatggAAATGGAGCATCCTGATAACGGTTCTCTGCAATGCGATAATTGTTCTAACGTATTCCATACAAAACAAGGCCTCAAAATGCACATTAAAAAGTGTAAACCAGAAGAATTAGTTGCAATCAAAGAAGAGTATGACATAGATTTGGATGATGACGTTAATTACAAAGAGGTCCAAAAACCCAGTGTGAAGCAGATTCGAGAGAATATTGTCACAGTTATTAATATGTCCACAGCGATACCTTTTAATTTCTATCAgaacaaatttaattgtttctaTTGCTCTCAAGATTTCGCCGACTCGGATTCAATGAGAGAGCACACACTTTTAGTACATCCAATTTGTGACGTCAATGaaaaatgcattaaaaaatGCAAGGAGACAGTATCGTGTGTTAAAATCGATGTGTCCACTTTAGCATGCAAAGTTTGCTTCGAATCTCTCAAGGATTTCGACAATCTAATAGACCATTTGGTATTAAAACACGAGGCTAACTACGACAAGACCATCACTACATGTTTACAACCTTATAGGCTGACGAAAGATCACATTGTTTGTCCAAATTGTCCGGAAGTGTTCCGATTTTTCGGGACACTTTTGAAGCACATGAATAAGAAGCATACGaacaataacataatatgtGTTTACTGCGGACAGATGTTTAGGCGGGATCAGAATTTAAGAGTGCACATTTGGCGTCACCATGGGCATGGGCGATTTAACTGCAACATGTGTGGAGCGGAGTGTAACATTCCATCAAGGTTGTACATGCACATGGCAAAAGTCCATGGCGTGAAAGCAGCCAAGTGTCCAAAGTGTCCAGAGACTTTCACCACTCAATATTTGAGGCAAAAACATCTGATCGAAGCACACGATTCCGGACACAAATGTAACTATTGCGGCAAACTTTTCACAAGGAATTCGTTTATGCGCGATCATGTTAGGCGTACTCATCTCAAAGAAAAGAATGTCGAATGCACTATTTGTAATATgaagttttttaataatatcctTCTTAGACGACACGTCGTGAAGCACAGCGGTGAAAAAAACTTCCATTGTGATGTGTGCGGCGAGAAATTCTTCTGGAGAAAATGTCTGCGAACGCATTTGGCTACACATAATAAGCAATAA
Protein Sequence: MEFDEIVVKESPGLCRCCLSEGCYKDMGTEYTWMNENEVYADMLLECFDIGISQHNDGPNGPTRLICEVCITRLRDACNFKKQVLDSEKKFIDMIGRGEFQAKVLIYPSQMKSEVEDPTGQEVEYLDDDDMDFGDDEPLKRPEEPTLSDITVSSLPVKNKRGRPKKAVVKTEKKAKVAKLEEKAKSSKSIVKDKKPRKFKSCESSSVRRRRNLQIIFNNTAIIPFKWRGKYLCFYCSKDMAEYTELRKHTKSHGNCSTQDHSLRVLKGGNNMEIKIDVSDITCEICNEPFSDFDELITHLCVKHQVEYDREVDMYIEKYRLVDLTCLVCGEKFAYFGFLVSHVNNMHPKNCLLCDKCNQKFNKSRDLFSHIKNYHREGGYKCDKCPQSFSSLNILRKHMNNRHLTSCNVCQLKLSSAALKQKHMEMEHPDNGSLQCDNCSNVFHTKQGLKMHIKKCKPEELVAIKEEYDIDLDDDVNYKEVQKPSVKQIRENIVTVINMSTAIPFNFYQNKFNCFYCSQDFADSDSMREHTLLVHPICDVNEKCIKKCKETVSCVKIDVSTLACKVCFESLKDFDNLIDHLVLKHEANYDKTITTCLQPYRLTKDHIVCPNCPEVFRFFGTLLKHMNKKHTNNNIICVYCGQMFRRDQNLRVHIWRHHGHGRFNCNMCGAECNIPSRLYMHMAKVHGVKAAKCPKCPETFTTQYLRQKHLIEAHDSGHKCNYCGKLFTRNSFMRDHVRRTHLKEKNVECTICNMKFFNNILLRRHVVKHSGEKNFHCDVCGEKFFWRKCLRTHLATHNKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013343;
90% Identity: -
80% Identity: -