Pint001329.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050464.1:6008083-6013247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.098 5.7 7.9 0.9 3 23 185 206 183 206 0.92 2 12 0.00094 0.055 14.2 1.2 2 23 268 290 267 290 0.90 3 12 0.023 1.3 9.9 0.3 3 23 298 318 296 318 0.94 4 12 1.6e-05 0.00092 19.8 2.4 1 23 353 376 353 376 0.96 5 12 0.0011 0.063 14.0 1.3 1 23 409 431 409 431 0.97 6 12 1.2e-05 0.00071 20.2 1.7 1 23 439 461 439 461 0.98 7 12 0.00046 0.027 15.2 1.6 1 23 470 493 470 493 0.97 8 12 0.00088 0.051 14.3 0.8 1 23 499 521 499 521 0.97 9 12 4.5e-06 0.00026 21.5 5.5 1 23 527 549 527 549 0.98 10 12 0.0003 0.018 15.8 0.6 1 23 554 576 554 576 0.98 11 12 1.5e-05 0.00089 19.8 3.5 1 23 582 604 582 604 0.96 12 12 0.00021 0.012 16.3 2.3 2 23 611 633 610 633 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGATAGTGAAGGACTTGTGTAGACTTTGTGCGAGTGTAAGAGAAGAGTTATCGAAAGACTTGTTCGATAGTAACAGTAAAAATGTCTTGAAATTGATACAAGACTTAATGCAAATCACAattACAGAAAGTGACAGTTTGCCAACTAAAATCTGTTTGAATTGTGAAGAGAGGATCGtttcttttcaattatttattctagaaTGCTATAAGGTGCAAgataatttcaacaaaatttgttCACAAAATTTACCTGTTAAGATTGAAGAtgaagttattaattttgggGACTCAGATATAAAATCGGAGataaaagTTGAGTTGAATGCTGATGAAATAGTATTGTgCTCAATCAATAATGAAGAATATGAAAATACAtcctttgaaaattttgatgatcaTCACTTAGATGCTGGAAGTTCtgaagatgatgatgatgatggagATGATGTTACTCTTGCTGAACTTAAAAAGGAGAAAGTAGAAAATCTCAATGAACTTCTAATGAAACCTCATTTGAAAATAAGAGATTTTGTGAATATGCATTGTGACTTATgtagtttaaaaacaaaatcttgggAGACATTACAAGACCACTATTCAGAAATACATCAGTCCGAAGTTTCTGTCAGTTGTGTTTGtggatttaaaatacaatccAAAAATGTGATGTATAAACATGTGCTTGAACATAAAATTCAAAGtgagaaattgataaataaatccaaaGAAGAATATGATCATAAAAATGATCAGAATTGTGGGGATCTCAAAGCAAAACATTTTGTTCAGCTCCAGTGTCATAAATGTggagaaaaaacaaaaacatggGCAACATTGGAAGATCATTACACATTTATTCATCAGAGTAAATTGATTGTCAATTGTTTACTGTGTGGCTTTAGTATAAGAAATAGAAGCATGCTGTACAAACATGTTTTGGAACATAAAAtgggaaatgaaaaaaaagttaataaggGTCGTGAAAAACAGGCGAAAACTAGAACAGATATTGACTATTGTAAACTCAAAGTTAAAGATTTTAtagaCTTTTCATGTCACATTTGCAACGCAAAGTTTTCAAGTTGGTACAGTTTAAAGAGTCATACTCAAATCAATCATAAGACACAACCAAAGGTCCGATGTTTATGTGGTGTGAATCTTACATCAAAAACAGTTTTGTACAAACATGTACAAGATCATAAAAATCCGAATTCTTTCTgttGTGATCAATgtccaaaaataacaaaaactctAGGGGCGCTGGAGAAACACAAATTGATGCACGTACCGAAGGCCGACCGGAAGTTCCAATGTAGTTCTTgtgacaaaatttttaattcaagaGAAAGTTTAAAATCTCACGAGCGGTCTCATATACCTATAGAAGAAAGAAAAGTATATCACTGTGACATGTGTGACATGAAATTCACGACCCCGTCGTCGCGTGCATCTCACAAGCGCGTTGTGCACGAAAAGATCAAAAGCTATGTATGCGACCAGTGCGGTTACGCGTGCGGCACCAACGGCGAGCTGCACCAGCACCGCGCCATACACAGCGACGACAAGCCGTTCGTCTGCAAGAAGTGCTACAAATCATTCAAGACCCACTCGAATCTGTCTACGCACATGGACACGCACGAAGGGACATCGTACACGTGCGGCGTGTGCAGTCGCGTGTTGAACAGCCGGCGTACACTGCGCAAACATCTGCTGGTACATGAAGAGCGATGCAGACACATCTGCGATTACTGCAACAAGGCCTTCAAGAGGAGGCAGACTCTcaagGTGCACCTTTACACGCACACGGGAGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGCATGCGCTGCCATCCGGACAAGATGCCGCAGACGCAGCACCAGCAGACCTACCGCCAGTACTCGCATCTGCCACCAGAGgAATACATCAAGAGCGATTTAGCAGCGATTGGATTAGATAAGGATCAAACGGAGACTatgtaa
- Protein Sequence
- MSVIVKDLCRLCASVREELSKDLFDSNSKNVLKLIQDLMQITITESDSLPTKICLNCEERIVSFQLFILECYKVQDNFNKICSQNLPVKIEDEVINFGDSDIKSEIKVELNADEIVLCSINNEEYENTSFENFDDHHLDAGSSEDDDDDGDDVTLAELKKEKVENLNELLMKPHLKIRDFVNMHCDLCSLKTKSWETLQDHYSEIHQSEVSVSCVCGFKIQSKNVMYKHVLEHKIQSEKLINKSKEEYDHKNDQNCGDLKAKHFVQLQCHKCGEKTKTWATLEDHYTFIHQSKLIVNCLLCGFSIRNRSMLYKHVLEHKMGNEKKVNKGREKQAKTRTDIDYCKLKVKDFIDFSCHICNAKFSSWYSLKSHTQINHKTQPKVRCLCGVNLTSKTVLYKHVQDHKNPNSFCCDQCPKITKTLGALEKHKLMHVPKADRKFQCSSCDKIFNSRESLKSHERSHIPIEERKVYHCDMCDMKFTTPSSRASHKRVVHEKIKSYVCDQCGYACGTNGELHQHRAIHSDDKPFVCKKCYKSFKTHSNLSTHMDTHEGTSYTCGVCSRVLNSRRTLRKHLLVHEERCRHICDYCNKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRMRCHPDKMPQTQHQQTYRQYSHLPPEEYIKSDLAAIGLDKDQTETM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -