Pint016545.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- zfy1
- Assembly
- GCA_027563975.2
- Location
- CM050488.1:4770318-4773075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.071 4.1 8.3 8.7 1 23 174 197 174 197 0.96 2 18 9.7e-06 0.00056 20.5 1.2 1 23 206 229 206 229 0.96 3 18 0.0057 0.33 11.8 0.8 2 23 242 264 242 264 0.97 4 18 8.2e-05 0.0047 17.6 1.7 1 23 273 296 273 296 0.98 5 18 1.5e-05 0.00087 19.9 1.3 1 23 308 331 308 331 0.96 6 18 0.00028 0.016 15.9 0.9 2 23 355 377 354 377 0.97 7 18 0.0015 0.085 13.6 1.2 2 23 387 409 386 409 0.96 8 18 0.44 26 5.8 2.4 3 20 415 432 413 437 0.88 9 18 5.4e-05 0.0032 18.1 0.1 2 23 439 461 438 461 0.96 10 18 0.0016 0.092 13.5 1.1 3 23 471 492 470 492 0.96 11 18 0.0021 0.12 13.2 2.7 1 23 497 520 497 520 0.94 12 18 0.0013 0.074 13.8 1.0 3 23 533 554 531 554 0.96 13 18 0.0019 0.11 13.3 2.5 1 23 579 602 579 603 0.94 14 18 0.22 13 6.8 0.1 2 23 609 630 608 630 0.92 15 18 0.013 0.76 10.6 1.8 2 23 635 656 635 656 0.98 16 18 3.1 1.8e+02 3.2 2.2 3 23 664 686 662 686 0.92 17 18 0.014 0.82 10.5 0.1 1 23 722 744 722 744 0.97 18 18 0.21 12 6.9 2.0 1 23 750 773 750 773 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAAATGAAGATGTCAAAGCTAAACTCGAAAATGATATTCAGATTAAGGACGAGAGAAAGGATCCTACATGCTTCTTGCCAGACGAGCCAATGTCCTATGAAattaagaagaagaaaaaaaagaagaagaaaaagaagaacaaGGAGCGAGATCCGTTTCGAGATTTAGATGTGCAAAATGATGAACTGACTTTGGAGATGCAAATGGATCCAGAGGTTAATATAAAAGTGGAGAATATTGAAGTAGAGTTAGATTTTAATGATTTCGCAAATAACACGGGCCTCATGGTAGAAGGACCGCAGAGCGAAGACAGCCAAGAACCAGAAATCAAAATAGAGGAACAGAACCATGAAGCAGTACTGTTGACATTTGAAAGTGTTGTCAACAAAACATTACTTGAATATAGTGAGAATATCAAATATGATGAAGAAGGGAATGTAATCGGCTTCGAACAGCCAGGTGCATCAGTGTTGGGTTACCCCCAGAATATTCCTATGAAAACAGCTCCAACACACATGTGCAAAGTCTGCCATCTAGTCTTTCAATCGCACAAAACCTTGAAAATGCATCAGAAAAGGAAACATAAAgcttatagaaaatattttgaacatatATGTGATTATTGTGGAATGTCGTACGAACAAAAAAACAGTCTAGTCGCTCATATGAGGAGGAAACACGGCCCAGACTCCACTCCGGACGATAGAGAAGAGCGAACATGTGAAGTTTGCGCACTAGTCTTCAAAGGAAATACACGGTTACGAATGCATATGAGGCGAAAGCACGGTTCATTCCAAGATTCATTCAAATTCAGCTGCGAGGAATGCGGTCTTACTTATGACAAGCACAGCAGTTTAGTCGTACACCAACGTAGAAAACATTCTGGTATCACACAACCAGTCTTGAATCAATGGTTCAACTGTCCTTTTTGTCCGAAAGTATTTACAAGAAGGGAGACGTACGCGAGACATGTTCAAAGGAAACATAGGATTTTGGACGAAGATGAAATCAAAGAAGAATTTCTCAATGTGAAGAATGAAGAAACCGGTGAAATCACGTGTAAACAATGTCCGTTAGTTTTTTCTTCTGTTAATTTCTTGAAGTTGCACATGAGAAGGAAACATAATGCATTGACAGAGGATTTTAGGCTTAAGTGTAGGATATGTAATTTATCATACGATAAGATAGAGAGCCTCAAAAGGCACGTGCGGAGGAAACATGGCGAAAATTCGCATTGCGAAGTGTGCAATAGACAATTTGACAGTAGAGAGGCATATTTGAATCACTCGCATGTAAAAACTCATTCTGAGTGTTCGATTTGTGGGCTTATATTCGCTTCGGAAGGCAATTTGGGAAAGCATATGAGGTTGACGCACAAAATTGACTCACCCAAACATGTATTTTGCAGTTCGTGTAACGAAGGATTCTACGATAAACGTCAATTGAAATCACATTTGATGAAAGTACATTTAAAAGTGACATACACATGTATGTTTTGCAGTAAAGTATTCAAAGCGAAAGAGAGTTATAGAAGGCATATTCTATTCAAACATCCTGAAAgtaatgacatgaaaaatcAGGCACAAAACTGCGAACAGTGTTCCGCTTCATTTCCTAACGAATTTGAACTCTGCCGTCATATAAATAGTGAACATTGCAATGAGCAAGATAAAGAAGTGAAGGAAGAGATTGTTGTAGTCAAACAGGAGGATGGTATTAAAGAATCGTTTCAGTGTACGAAATGCCCGGAATCGTATACTGCTTGGGAGCAATTGAGGTTACATCACGAACAAAATCACCATTTGCCAGAAGAGACACAATGTCAAGTGTGCGGTGAAATGGTCCCAGGAAACGCTTTGAAAAAGCATATGCGAAACATCCACATCGAAGAGCCACAGTGTAAATATTGTGAGTTCAAAACCAATAACAGGGCCAGTATGACACAGCATATTTTAAggcacaaaaatattacaacgTTACACTGTGATTACATGGGTTGTAGATACAAAACATATTACGAAGGTGCTATGCAGCGACACAAGAGGAAGCATGTGGAAATCGGTGTTAAACTGCAGTGTAGTAAGTGTCCGTTTCaaacaatgaataaatatattttaaggtaTCATGAAGAAGCTCATACTACAGGAAAGAAGCGTTATGTGTGCGATCAATGTGACTATGCAACGATTTTGCCAGCGAATTTGGTACAGCACAAATATAAGCATTCCGAAGAGAAAAGATTCAAGTGTGAAGTGTGCCCGTTCGctacaaaatacaatacatcTTTAAGATTTCACGTGAAGAAGAAACATTGTGATCTCCCATCGCTCagttga
- Protein Sequence
- MSENEDVKAKLENDIQIKDERKDPTCFLPDEPMSYEIKKKKKKKKKKKNKERDPFRDLDVQNDELTLEMQMDPEVNIKVENIEVELDFNDFANNTGLMVEGPQSEDSQEPEIKIEEQNHEAVLLTFESVVNKTLLEYSENIKYDEEGNVIGFEQPGASVLGYPQNIPMKTAPTHMCKVCHLVFQSHKTLKMHQKRKHKAYRKYFEHICDYCGMSYEQKNSLVAHMRRKHGPDSTPDDREERTCEVCALVFKGNTRLRMHMRRKHGSFQDSFKFSCEECGLTYDKHSSLVVHQRRKHSGITQPVLNQWFNCPFCPKVFTRRETYARHVQRKHRILDEDEIKEEFLNVKNEETGEITCKQCPLVFSSVNFLKLHMRRKHNALTEDFRLKCRICNLSYDKIESLKRHVRRKHGENSHCEVCNRQFDSREAYLNHSHVKTHSECSICGLIFASEGNLGKHMRLTHKIDSPKHVFCSSCNEGFYDKRQLKSHLMKVHLKVTYTCMFCSKVFKAKESYRRHILFKHPESNDMKNQAQNCEQCSASFPNEFELCRHINSEHCNEQDKEVKEEIVVVKQEDGIKESFQCTKCPESYTAWEQLRLHHEQNHHLPEETQCQVCGEMVPGNALKKHMRNIHIEEPQCKYCEFKTNNRASMTQHILRHKNITTLHCDYMGCRYKTYYEGAMQRHKRKHVEIGVKLQCSKCPFQTMNKYILRYHEEAHTTGKKRYVCDQCDYATILPANLVQHKYKHSEEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073068;
- 90% Identity
- -
- 80% Identity
- -