Pint018086.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050492.1:2616065-2618916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.8 2.8e+02 2.6 1.9 1 23 33 56 33 56 0.93 2 20 0.38 22 6.0 0.6 2 23 87 109 86 109 0.94 3 20 0.0012 0.071 13.9 1.3 2 23 132 153 131 154 0.94 4 20 0.002 0.12 13.2 3.3 1 23 159 182 159 182 0.97 5 20 0.021 1.2 10.0 0.3 1 23 187 210 187 210 0.92 6 20 1.3 75 4.4 0.9 2 23 216 238 216 238 0.79 7 20 0.0003 0.017 15.8 0.3 2 23 246 268 245 268 0.97 8 20 0.064 3.7 8.5 0.0 2 23 275 296 274 296 0.96 9 20 5.7e-06 0.00033 21.2 1.1 1 23 302 324 302 324 0.90 10 20 2.3e-05 0.0013 19.3 1.2 1 23 330 353 330 353 0.97 11 20 1.3 77 4.3 1.6 1 23 429 452 429 452 0.88 12 20 3.8 2.2e+02 2.9 0.0 2 23 480 503 479 503 0.89 13 20 0.15 8.8 7.3 0.4 2 23 526 548 525 548 0.95 14 20 0.00023 0.014 16.1 0.0 1 20 553 572 553 573 0.96 15 20 0.00052 0.03 15.0 3.3 1 23 579 602 579 602 0.94 16 20 0.00058 0.034 14.9 0.3 1 23 608 631 608 631 0.95 17 20 0.0041 0.24 12.2 1.6 2 23 639 661 638 661 0.95 18 20 0.12 6.9 7.6 0.5 1 23 666 688 666 688 0.98 19 20 1e-06 5.8e-05 23.6 0.3 1 23 694 716 694 716 0.98 20 20 0.0026 0.15 12.8 0.8 2 23 723 745 723 745 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGCGCAGGTAAACTGTTGAAAAAACGAAGGAACATTGAGTATGTCCTGCAGTACAGCAATGCGACGCCATTTCTGTGGTACAAGAGCAAATATAGGTGTTTTTTCTGTTGCGAACCCATGAAGGATCCCTCTATGCTCAGAGAGCATACAAAAAACGTCCATCAATTTGCTAATCTCGAACTCGTCGTATTCGACAGAACGAAACACAACAGAAACAAAGACGCAGCAGTCAAAATCGACGTCACTGATCTATCTTGCAAACTGTGCACGAATACAGTGAACGATTTCGAAGAATTGCTCCACCATTTGATCATTTCTCATGACGCCGAATACGACGTTGGTGTGCCAAATTGTTTGTTACCATTCAAACTGGACAAAGATCAACTTACGTGTCCAACTTGCGGCTTGAAGTTCGCGTTCTTCGAATATTTGCTCCGGCATGCGAATAAGCACCACCTATCTCACGATTACATTTGCGATGTATGCGGAACCAGCTTCCAAGGGGAGAACCACTTGAAAATGCACCATAGATACTATCATAGACAAGGCGGCTACACCTGCGAGTACTGTGGGATCACCTTGACGACGCTATCCAAAAAGATCCTACACGAACAGAACGTGCATTACGTGAATCTGCCAACTTGTCCCCACTGCTCGGAGACATTCTTAAGTCCGTACTTCAAGAAGCTGCATTTGGCTAACGTGCACAGTGTCGAagagctaaaaataaaatgcccTTATTGCTCCAAGGTATATCCGCAAGAAAGTATAATGTTTCGTCACATGAGGAGGGTTCATTTGAGGGAGAAGAACGTGGAATGCGAAGTGTGCGGTGACAAATTCTTCGGCCCTTACGATGTAAAGATGCACATGGCGAAGCATAACGGGGAAAAGAAATTCATATGCTCTGTATGCGGGAAGAAGTTTTCGAAAAAGAGTAATTTGAATTCACATTCAGTTTTGCATACAGGAGAGAAAAAGTATGTTTGCGCAGTATGTAACAAAGCCTTCGCTCATCAGCCGAATTATCGGATGCATATGAAAAACCGGCATCCGCAGCATGTTGAAGAAACACAAGTGATTGATGAGCAATTGGAAGATTCTGAAATGATTCAACTGGAGTTCATAAAAGACGATCTGGAAGGGACTGAAGTAACCGGGATATTAGTCAAGAAAGAATCACCGAGCATTACGCAGCGACTGTATTCCATAAGAGAGAATATACTCAACGTGCTCCGATACGGAAGTGTAGTGCCCTTCAACTGGAACACAAAAGGGTTTAGATGTTTCTACTGCTCTAAAACTATCAACGActtaactatattaaaaagtCACACCTCAGAGAAACATAGCAACATTGATCTAGACGAATTCATTCCAAAAAAGATCATATCAAAAGATGTACCTATCAAAATTGACGTTACCAATATTAGCTGCAAGTTTTGTCCCGATATGCCGGTGTCTAATCTAGAAGAACTAGTGTCGCATATAATGATTGTCCATGAAGAGAACTACGATGTATCAGCTGGAGTTTGCATATTCCCGTTTGTTTTGAAGAAAGAAATTATGCCGTGCGTCCTCTGTAATAATCAGTTCGATAATTTCACCAGACTTATCAGCCATATGAATAAAGAACATATACAACACAGCTATGTCTGCCAAATCTGTGGCTTAAGCTTCATAGATAATATTCGGCTCAAAAGGCATATAAGCTGCAGTCATATAGGACATCGATGTACCATTTGCAAGAAGGTATTTTCAGCTGCTCACAAGTTGGAGAAACACAGAGTGAGAATACACGGACAAGTTAAGAGCTACGATTGCAATTTATGTAGTGAATCGTTTGAgaataattatcaaataaaagtcCATATGGGGAAAGTGCACAATGTTCAGAAATATAGGATAAAATGTGAGCACTGTCCTAAAATTTGTACGACCAAAGGAGCCATGCTTTTGCATGTGCAGTCATTGCATTCTGACGTGAAGTTCGAATGCGATCTTTGCGATTATAAAACAGCTATCAAGTGGATGATAAAGCTTCATAAGCGTACACATTTCGGCGAGAGGAATTATGCGTGTAGCATTTGTGATAGAAAATTTGGTAGATCTAGTAATGTAAGGGCGCATATGAAAGTGCATACTGGACAATTCGGTCGAGTTTGTCGACATTGCAGGAAAGGGTTCATTGATTTCGACGCCTTGAGGAATCATGAGCGTGAAGCTCACTATTTCGATCAAATATAA
- Protein Sequence
- MESAGKLLKKRRNIEYVLQYSNATPFLWYKSKYRCFFCCEPMKDPSMLREHTKNVHQFANLELVVFDRTKHNRNKDAAVKIDVTDLSCKLCTNTVNDFEELLHHLIISHDAEYDVGVPNCLLPFKLDKDQLTCPTCGLKFAFFEYLLRHANKHHLSHDYICDVCGTSFQGENHLKMHHRYYHRQGGYTCEYCGITLTTLSKKILHEQNVHYVNLPTCPHCSETFLSPYFKKLHLANVHSVEELKIKCPYCSKVYPQESIMFRHMRRVHLREKNVECEVCGDKFFGPYDVKMHMAKHNGEKKFICSVCGKKFSKKSNLNSHSVLHTGEKKYVCAVCNKAFAHQPNYRMHMKNRHPQHVEETQVIDEQLEDSEMIQLEFIKDDLEGTEVTGILVKKESPSITQRLYSIRENILNVLRYGSVVPFNWNTKGFRCFYCSKTINDLTILKSHTSEKHSNIDLDEFIPKKIISKDVPIKIDVTNISCKFCPDMPVSNLEELVSHIMIVHEENYDVSAGVCIFPFVLKKEIMPCVLCNNQFDNFTRLISHMNKEHIQHSYVCQICGLSFIDNIRLKRHISCSHIGHRCTICKKVFSAAHKLEKHRVRIHGQVKSYDCNLCSESFENNYQIKVHMGKVHNVQKYRIKCEHCPKICTTKGAMLLHVQSLHSDVKFECDLCDYKTAIKWMIKLHKRTHFGERNYACSICDRKFGRSSNVRAHMKVHTGQFGRVCRHCRKGFIDFDALRNHEREAHYFDQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -