Pint017778.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- Znf574
- Assembly
- GCA_027563975.2
- Location
- CM050492.1:280906-286635[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.091 5.3 8.0 0.9 1 23 116 139 116 139 0.93 2 31 0.18 10 7.0 1.2 2 23 165 187 164 187 0.96 3 31 0.061 3.6 8.5 1.7 1 23 211 233 211 233 0.98 4 31 0.00094 0.055 14.2 0.3 1 23 237 259 237 259 0.94 5 31 0.26 15 6.5 4.6 1 23 264 287 264 287 0.93 6 31 0.045 2.6 9.0 0.3 2 23 295 317 294 317 0.94 7 31 0.00014 0.0083 16.8 1.0 1 23 324 347 324 347 0.96 8 31 0.044 2.6 9.0 7.6 1 23 353 375 353 375 0.98 9 31 0.00014 0.0084 16.8 2.9 1 23 381 403 381 403 0.99 10 31 4e-05 0.0023 18.5 3.3 1 23 409 432 409 432 0.97 11 31 0.0013 0.074 13.8 2.4 1 23 516 539 516 539 0.96 12 31 0.068 4 8.4 0.3 1 23 611 633 611 633 0.97 13 31 0.023 1.3 9.9 3.3 1 23 637 659 637 659 0.98 14 31 0.11 6.1 7.8 5.6 1 23 664 687 664 687 0.97 15 31 0.92 53 4.8 1.0 2 23 695 717 694 717 0.88 16 31 0.00047 0.027 15.2 0.5 1 23 724 747 724 747 0.94 17 31 0.29 17 6.4 10.3 1 23 753 775 753 775 0.98 18 31 2.4e-05 0.0014 19.2 4.0 1 23 781 803 781 803 0.99 19 31 0.0095 0.55 11.1 7.8 1 23 809 832 809 832 0.98 20 31 0.0016 0.09 13.5 1.6 1 23 915 938 915 938 0.93 21 31 3.9 2.3e+02 2.8 2.0 1 23 1010 1032 1010 1032 0.97 22 31 0.048 2.8 8.8 2.7 1 23 1036 1058 1036 1058 0.98 23 31 0.0027 0.15 12.8 0.6 1 23 1114 1137 1114 1137 0.92 24 31 0.1 6 7.8 1.0 1 23 1209 1231 1209 1231 0.97 25 31 0.0001 0.0059 17.3 2.1 1 23 1235 1257 1235 1257 0.97 26 31 0.015 0.88 10.4 3.5 1 23 1262 1285 1262 1285 0.96 27 31 4.5 2.6e+02 2.6 3.6 2 23 1293 1315 1292 1315 0.92 28 31 0.0003 0.017 15.8 2.4 1 23 1322 1345 1322 1345 0.94 29 31 0.0051 0.29 11.9 2.2 1 23 1351 1373 1351 1373 0.98 30 31 5.7e-05 0.0033 18.1 1.3 1 23 1379 1401 1379 1401 0.98 31 31 0.0014 0.08 13.7 8.0 1 23 1407 1430 1407 1430 0.98
Sequence Information
- Coding Sequence
- atgcttGTTAACGGACACTCAGAATGTGTGCAAGATTTTAATAGACAACTTTTGTCCGTAGGTTTCACCAGAGACACTACTCGCGTTGTTGATCCAGATCAAGACAAACGTAATTCTGGAGCTTCGATAAGAGAATTGGGCcttaataaaaacgaaaatgaCAATgtgaagaatataaataagatagATCGTAAAAAAGAGAATTACGAAGCGAAGAGTGTAGTGTCATACGCTCGTGTTAGCATAGGGGATGATAAAAACGTAATgaaaaaacatacacataacATTAATCAGATTCTACTAAACTCCAACGCGACTCCGATTAGAAGCTATACGAGTTTAGGTTTCTACTGTCAGTTTTGTCCGGATCATTTCTCGAAACCAGCTGAATTGAAGCTACACACTTTGGCCGATCATGAAAACGCTAAAATGAAAGAAGTACAAGCATATTGGTTGGTCTATTACGTTGTGAAGTTAGATATTACGCGGTTGAAATGTTTCCTATGTCACAAAAACATCGACAGTCTGCAGCAACTGGTGAATCACCTGCAAAGCGTCCACGACAAAAAGTTTTACACCGACATCAACAATCATATTCTTCCTTTCAAATTTAGTGAAGACCCAAAcgattttaaatgtgttttatgCCCTAATGTGTACAAGCATTTTAAGCAAATACAAGAACACATGAGCGTACATTACCCTAATTACTTGTGCGATGTGTGCAACCGTCCATTTGTTAATAAGAATTCGTTGAAAGGCCACTTGGGGAGACACGAGCAAGGCGAGTATAAGTGCGGATTTTGTCCGAAGATTTTCAGCACGAGCGAGAGGAAATGTGATCACGAAAGACACGTGCACATAGGTGATCACGTGAGAAACAAATGCCCGTATTGTCCGGCGAAATTCGTGAGTTACAACAAGCGGAAAGAGCACATGGTTATAGAGCATGGCGCCCAACCTGTAACTTACAATTGTCTCGCGTGTGACAAAGTTTTTAATACGAAAATTGATTTGACGAAGCACACTAAACGAGATCATTTGATGGAGCGGACTCATCAGTGTTCAGAGTGCAAGGCGTCCTTTTTTTCTAGAAAATGTCTGAAAATGCATATGTATAAGCATACTGGCGTGATGGAGTTTAAATGTCAGTTTTGTTTGAAACGATTCGCCCGGAGGACTACCCTCAAAGAGCATTTGCGTATTCATTTAAACGACAGAAAATTCAAGTGTGGGAAGTGTGGACATTCCTTTATTCAGAAGTCTAGTTATCAGAGCCATTTGCGCGCTAAACATGGTGACGCCGACTATAccactcgggtaaaaatagATGCTGATCTAAAAAGTGAGGACAAACATCTACATTTACCAGGAATCACCATAAGAAAACTGAGCTCggataaaaaaggaaaagacAACGCTATTAAGAAAACTGCCACGAGCATAATGTCCGACCAAACTGAATTTAAAAAGCAATTACACAATATCAAACAGATTTTACTAAACTCCAATGCGACACCGATAAAAAGCTACTCGAAATTTGGCTACTATTGTAATTTCTGTCCGGAACATTTCACGAAACCCACTGAATTGAAACTGCACACGTTGTCCAATCACGAGGATGTAGAAGGAGTGAAATTTGTGAAAGCCACATTGTCACATCTCATCGTGAAGTTAGATATAACAGATCTGAAATGTTTCCTTTGTAACGATGCAATCGAAAGTCTACAACAACTTGTGGATCACTTACAAAACGACCAcgacaaacatttttacacaGACATCAACAACCACATTCTACCTTTCAAATTTGGTGAAGATCCAAATGACTTCCGATGTGTCTTATGCCCTAATGTGTACAAGCGTTTTAAGCAAATTCAAGAACACATGGGCGTGCATTACCCTAATTACACATGCGATGTGTGCAGTTCTACGTTTGTGAATAAGAATTCGTTGAAATGCCACATGGAGAGACACGAGCGAGGCGAGTACAGATGTCGCTTTTGCCCGAAAGTTTTCAACACGCACATTAATAAGTGTGACCATGAAAGACGCATACACATTGACGGCGATTTACGAAACAAATGCCCGCATTGCCCGGCGAGATTCGGGAATTACAACAAGCGTAATGAACACGTGGTCAAAGAGCATGGCGCCCAACCTGTAACCTTCGATTGTCTCGCGTGTGATAAAGTCTTTAATACGAAAGTTGATTTGACGATGCACACGAAGCGAGATCATTTAATGGAACGCACTCATCAGTGTTCAGAGTGCAAGGcgtgttttttttctagaaaatGCCTGAAGATGCATATGTATAAGCATAGTGGCGTAAAAGAGTTCAAATGTCAGTTTTGCTTTAAAAGTTTCGCCAGGAAGAACACTCTCAAACAGCATTTGCGTATCCATTTAAATGACAGGAGGTACAAGTGTGGAAAGTGTGCTCAAACCTTCATTCAGAAGTGTAGCTATCAGAAACATATGTGCACGAAACATGGTGACGCCGACGTTACAACTCGTGTAAGAGTTAGTGATCCCGTTGTAAATACTGGGGGGAATCTTCTACATTTACCAGAAATGACCATAAGAAAATTGGGCTCCAATAAAAAAGGGgaatacaatgaaaaaaacGCCGTTAATATAAAGGCCGACAGAGTTGAATTagaaaaacatatacataatattgagCAGATTCTACAAAACTCCAACGCAACTCCAATAAAATTCCATTCGAGCTTAGGCTACTCATGTAACTTCTGTCCAAAACATTACACGAAACCCGCTGAATTGAAACTACACACATTGGCCAAACATGAAAATGTCGAAAACCTGAGATTTGCGAAAGGCACTTTGGCATCTCTCGTCGTGAAGTTAGATATAACAGATCTAAAATGTTTCCTGTGTCGCAAACACATCGAAAGTCTACAGGAATTTGTGGATCACTTACAATGCGACCATAGCAAAAAAATTTACACCGACATCAACAACCACATACTGCCTTTCAAATTTAGTGACGACCCGAATCACTTCGAATGCGTTCTATGCCGTGATGTGTTCAAAAGTTTCAAGCTCACTCAAGAACACATGCACATTCattatacaaattacacaTGTGATATCTGCAATAGTACGTATGTAAATAAGCTTTGTTTGAAATACCACGTGGAGAGACACATGCAAGTATCCAGCAAAAAAGGAAAAGGCAGTGAAAATATCGCAATTAATAGAGATAATTACATAATGGCCGATCAAGTTGAAttcaaaaaacatttacataatattaagcAGATTCTAAACAACTCCAATGCCACTCCGGTTAAAGCATACACAAGCTTGGGTTACTTTTGTAATTTCTGCCCGGAGAATTTCAAGAAACCCGCCGATTTGAAACTACACACTTTGgacaatcataaaaatataggaaagTTGAAATTCACAAAAGGCGGCATGTCGTATCATCTCGTGAAGTTAGACATAACAGACCTGAAATGTTTCCTTTGTCAGAATGATATCGAAAGTCTGCAACAACTTGTGGATCACTTACAAAACGACCACGACAAACATTATTACACCGACATCAACAACCACATTCTTCCGTTCAAATTTGGTGCAGATCCAAATGACTTCCGATGTGTCTTATGCCCTAATGTGTACAAGCATTTTAAGCAAGTTCAAGAACACATGGGCGTGCATTATCCTAATTACACATGCGATGTGTGCAGTTGTATGTTTGTGAGTAAGTCTTCGTTGCAACGCCACGCGGAGCGACACGAACAAGGTCAGCACGAATGCAGTTTTTGTCCCAAGGTATTCAGCTCGCACGGCAATAAGTATGACCATGAAAGACGTGTACACAAATCTGGTAATTTAAGAAACAAATGCCCGCATTGTCCGGCGAGATTCATATGTTACAACCAGCGGAACAGGCATATGGTGAAAGAGCATGGCGCCCAACCTGTAACCTTCGATTGTCTCGCGTGTGACAAAGTATTTCCCTCGAGAAAGCATTTGACGAAGCACACGAAGCGTGACCATTTGATGGAGCGGCGACATCAGTGTCAGGAGTGCCAGGCGCGCTTTTTTGCCGCCAAAGACctcaaaaaacatatatatacgCATACGGGCGTGAAAGATCACAAATGTGAGGTTTGTTTAAAAGAATTCGCCTTGAAGGTTAATCTCAGAACGCATATGCGTATACATTCGAACGACAGGAGATTCAAGTGTAGGAGTTGTGGACAGACTTTTATTCATAAGTGTAGTTATCGCAACCATATGCGCACACAACACGACGAAGTCGTATAA
- Protein Sequence
- MLVNGHSECVQDFNRQLLSVGFTRDTTRVVDPDQDKRNSGASIRELGLNKNENDNVKNINKIDRKKENYEAKSVVSYARVSIGDDKNVMKKHTHNINQILLNSNATPIRSYTSLGFYCQFCPDHFSKPAELKLHTLADHENAKMKEVQAYWLVYYVVKLDITRLKCFLCHKNIDSLQQLVNHLQSVHDKKFYTDINNHILPFKFSEDPNDFKCVLCPNVYKHFKQIQEHMSVHYPNYLCDVCNRPFVNKNSLKGHLGRHEQGEYKCGFCPKIFSTSERKCDHERHVHIGDHVRNKCPYCPAKFVSYNKRKEHMVIEHGAQPVTYNCLACDKVFNTKIDLTKHTKRDHLMERTHQCSECKASFFSRKCLKMHMYKHTGVMEFKCQFCLKRFARRTTLKEHLRIHLNDRKFKCGKCGHSFIQKSSYQSHLRAKHGDADYTTRVKIDADLKSEDKHLHLPGITIRKLSSDKKGKDNAIKKTATSIMSDQTEFKKQLHNIKQILLNSNATPIKSYSKFGYYCNFCPEHFTKPTELKLHTLSNHEDVEGVKFVKATLSHLIVKLDITDLKCFLCNDAIESLQQLVDHLQNDHDKHFYTDINNHILPFKFGEDPNDFRCVLCPNVYKRFKQIQEHMGVHYPNYTCDVCSSTFVNKNSLKCHMERHERGEYRCRFCPKVFNTHINKCDHERRIHIDGDLRNKCPHCPARFGNYNKRNEHVVKEHGAQPVTFDCLACDKVFNTKVDLTMHTKRDHLMERTHQCSECKACFFSRKCLKMHMYKHSGVKEFKCQFCFKSFARKNTLKQHLRIHLNDRRYKCGKCAQTFIQKCSYQKHMCTKHGDADVTTRVRVSDPVVNTGGNLLHLPEMTIRKLGSNKKGEYNEKNAVNIKADRVELEKHIHNIEQILQNSNATPIKFHSSLGYSCNFCPKHYTKPAELKLHTLAKHENVENLRFAKGTLASLVVKLDITDLKCFLCRKHIESLQEFVDHLQCDHSKKIYTDINNHILPFKFSDDPNHFECVLCRDVFKSFKLTQEHMHIHYTNYTCDICNSTYVNKLCLKYHVERHMQVSSKKGKGSENIAINRDNYIMADQVEFKKHLHNIKQILNNSNATPVKAYTSLGYFCNFCPENFKKPADLKLHTLDNHKNIGKLKFTKGGMSYHLVKLDITDLKCFLCQNDIESLQQLVDHLQNDHDKHYYTDINNHILPFKFGADPNDFRCVLCPNVYKHFKQVQEHMGVHYPNYTCDVCSCMFVSKSSLQRHAERHEQGQHECSFCPKVFSSHGNKYDHERRVHKSGNLRNKCPHCPARFICYNQRNRHMVKEHGAQPVTFDCLACDKVFPSRKHLTKHTKRDHLMERRHQCQECQARFFAAKDLKKHIYTHTGVKDHKCEVCLKEFALKVNLRTHMRIHSNDRRFKCRSCGQTFIHKCSYRNHMRTQHDEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -