Pint018085.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050492.1:2608825-2613594[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.014 0.83 10.5 2.6 1 23 82 104 82 104 0.95 2 32 0.0055 0.32 11.8 0.0 3 23 133 154 131 154 0.92 3 32 0.067 3.9 8.4 4.6 1 23 174 197 174 197 0.97 4 32 0.0045 0.26 12.1 0.8 1 23 202 225 202 225 0.96 5 32 0.0037 0.21 12.4 3.7 1 23 230 253 230 253 0.97 6 32 0.054 3.1 8.7 1.7 3 23 257 278 256 278 0.94 7 32 0.001 0.059 14.1 1.1 2 22 285 305 284 305 0.96 8 32 0.028 1.6 9.6 5.1 1 23 361 384 361 384 0.95 9 32 4.3 2.5e+02 2.7 0.0 2 23 412 434 411 434 0.93 10 32 0.00094 0.054 14.2 0.2 3 23 458 479 457 479 0.97 11 32 0.043 2.5 9.0 1.3 3 23 486 507 484 507 0.94 12 32 0.00033 0.019 15.6 0.3 1 20 512 531 512 535 0.90 13 32 0.0027 0.16 12.8 0.2 2 23 541 563 540 563 0.92 14 32 0.052 3 8.7 3.5 2 23 568 590 567 590 0.97 15 32 0.4 23 6.0 5.5 2 23 597 618 596 618 0.96 16 32 7 4.1e+02 2.0 0.4 1 9 624 632 624 637 0.79 17 32 0.034 2 9.3 2.0 1 23 654 676 654 676 0.95 18 32 0.98 57 4.7 0.0 3 21 705 723 703 726 0.86 19 32 0.0063 0.37 11.6 0.7 1 23 746 769 746 769 0.97 20 32 7.5e-06 0.00044 20.8 0.2 1 23 774 797 774 797 0.96 21 32 0.0039 0.23 12.3 0.8 1 23 802 825 802 825 0.97 22 32 0.0077 0.45 11.4 0.7 2 23 828 850 828 850 0.96 23 32 0.026 1.5 9.7 1.5 2 21 857 876 856 877 0.94 24 32 0.0047 0.27 12.0 1.5 1 23 934 957 934 957 0.93 25 32 1.9 1.1e+02 3.8 0.0 2 23 985 1007 984 1007 0.93 26 32 0.11 6.3 7.7 0.0 2 23 1030 1053 1029 1053 0.93 27 32 8.3e-05 0.0048 17.5 0.7 3 23 1060 1081 1059 1081 0.94 28 32 0.0028 0.16 12.8 2.5 2 23 1086 1108 1085 1108 0.94 29 32 0.0051 0.3 11.9 1.0 3 23 1115 1136 1113 1136 0.96 30 32 1.7e-05 0.00098 19.7 4.9 1 23 1140 1163 1140 1163 0.97 31 32 0.00049 0.028 15.1 0.3 2 23 1170 1191 1169 1191 0.96 32 32 3.2e-06 0.00019 22.0 0.5 1 23 1197 1219 1197 1219 0.98
Sequence Information
- Coding Sequence
- ATGCGATTTTTGTGGCAAGCTATTTGGGAAACACTCTGTCATGGAAGAGCATATAAGAAGGCTGCATTTGAAGGAGAAGAATGTGAACTGTCCAGTGTGTTCAGAGAGGTTTTTCGACGCAACCAGACTGAAGATAATACCGCGACCGCGCATAGAGATGGCCGCGCGTCCGAAATCAGAAGGAAAAACTTAATAACACTGTTCAACAACACGACCATCTTCCCTTTCAAATGGCGAAGCAACTTCCTATGCTTCTATTGCGGTAGAATTTACAAAGAATATATGGAGTTCAAAAAGCACACTAAATCTCACGGCCGGTGCACCACTAAGGACCCATCGTTGAGAATCATCAACGgcaaatatatagaaataaaaatagacgtatctgaaattatttgtaacatttgtGATGAATCATTCAATAGTCTGGACGATATTATAGAACATATTATTGGGAAGCACAACTTGAAATATGATACAGATGTCAACATCACCTATCAAGCGTACAGGTTAAAAGATTTCAAATGTCTGCATTGTGATTCTCAATTTAGTTATTTCGGTTACTTGATACATCACGTGAACTCGTCACATCCGCAGGAAAATTTTGTTTGCGTTGAGTGCGGtgctagttttaataaaagcaATTATTTGATGTTTCATATGAGGAATTTCCACCGTAAAGAAGGCTACAGTTGCAATCAGTGTCAATTGAAATTTGATTCGTATCATTCGCTTCGGAGCCATCGACAAAGCGCACATTTAAGAAACTGTAAAAACTGCGACTTTTGTTCCGATTCTCGAATACTCTTACAAAGACATATCCAAGCCGAACACCCTGAAGATGGCAATGTAAAATGCTCTTATTGCGATAGAAAATGTCGTAGCACCGACGGCCTGGCTGTACACATGAGAAAATGCCgaataaaacttgaaaagCAGAAAAAAGATAACTCGTTAcctcataataatatatctgcGAATATGAAGCCTAAGAAAAATAGTAATCTTATGCAAATAAGGCAAAACGTACAAACTATAATCAATATGTCGACAGCGGTACCCTTTAGTTTCTTCAACAGATTCTCTTGTTTCTATTGTTCTAAAAAGTTCTCCgaatttcattatttgaaaGAGCATACCAATTTAGAACATCCTATATGTGACATCAAAGCTAAGTCCATGATGGCAATGAAGGGGAAACATCTGCGGGTCAAAGTGGATATAAGTTCCCTGTCCTGCAAAGTTTGTTCACAATCTATGTCGGGTCTGGACGTTTTGATAGATCATCTGATAACGGAGCATAAAGTACATTATGACAAATCGGTAAATGATTGTTTAGAGCCGTACAGGATGGACAAAGAAAGCGTGGCTTGTCCTCAGTGCCCGCAGCAGTTCAGTTACTTCGGAAGTCTGCTGAAACACATAAATAGTTCGCATAACGACAATAACATCATTTGCGTTTTTTGCGGCATGTCTTTTAGGTGTGAAACGAATTTGCGGTCACATATATCCCGGTTACACAAACGGGAAggttataaatgcaaaatctGCGATTTAGACTTCAATTCTAGGGATGCTCTTCAGACACACGCCGGTAACACTCACGGCACCAAGATTTCAAAATGTGCCGAGTGCGGGCAGGCGTTCTCCTCAAAAAATGTCATGAGGCGGCACCTTATAGACGTCCACGGTATAGGACAGAAGTGCGTCCATTGTGGGAAACTATTCCCTAAAAAATGTCTAATGCTAGCTCACGTGCGGAGCACACATTTGAAAGAGAAAAACGTACAGTGTCACATGTGTCAGCAGAAATTTTTCAGTGGATGCCTGTTGAAAAAACACTTGGTCAAACATTTCGGAGAGCGCAACTTCCACTGCGACGTCTGCGGCAAACAAAGGAAAAACTTAAGAATCCTCTTCAACAACACCACTATTATCCCGTTCAAATGGCGGGGCAAGTTCCTCTGTTTCTACTGCGCCAAAAGCTATTCAGAGTATCCCGAATTcagaaaacatacaaaatcacaCGGGCCGTGCACTACAAAGGATTACGCGCTGAAAGTTATCAAAGGAAACCATATAGAAATCAAGGTAGACGTTTCCGAAATCATATGCGATATATGTAACGAACCTTTCGGTAGTATGTCCGAGATAGTCGACCATCTGGTCGGCAAGCATACCATGGAATACGATAAGAGCGTTGAAATTCCGTTCCAAGCTTACAGGTTGATCGACTTCAAGTGTTTGTTTTGCGACCAGCAGTTCTCATATTTCGGCAGCTTGGTCAGTCACGTCAACATCATGCATCCGCAGAATAGTTTTATCTGCGACGACTGTGGCGcgacttttaataaaaagagaGACTTGGCTGTGCACATGAGGAATCTCCACCGCCAGGGCGGGTACGCGTGCGATCAGTGCACTGGGAATTTCGACACATATTACGCGTTACGCACTCATCAAAACACTACTCATTTTAGGAAATGTAAAAACTGTAATCTGCGCTTCTTGTCTCCCGTTCTTTTGCAAAAGCATATGAAGGCTGAGCATCCGGAAGATGGGAACGTGAAGTGTTCGTTTTGCGGCAAAGAGTGCCATTCGAAGAATGGTTTGGCGCAACACATGGCCAGGTGTAAGGTGAAGATGATTGCTCAACCCGACGAACCGCCGATGTTCGATTCCTTCCCAGCGGACGTCGGCATGAAGCCGAAGAAAAAGCAGAACATATTACAGATAAGACAGAACATACAGTGTGTACTAAACATGTCCACGGCTATTCCGTTTAAATTCTTCTCGAAGTTCAGCTGTTTCTATTGCTCTAAAAAGTTCACAGAATTTGAAGAGTTAAAAGAACACACAATCTTGGAGCATCCGATATGTGAACTCAAATCTAAGTgtatgaaaaaatgtaaaggCGAAAGGATTACTGTTAAAATAGATATCGCGTGCTTATCTTGTAAAATATGTTCGCAGCCCATGACCGAATTAGATGCTCTGATAGATCATTTAATATCGGAGCACAAAGCTAACTACGATAAGTCATTTACCCGTTGTTTTGAGCCGTTTAAGATTATCAAGGACAATTTGCCATGCCCCGTGTGTCCGGAACGAGTGTTTCGTTATTTCGCGACTTTGCTAAAACACTTAAACGCGGAACATAGCAACAACAATAGGATATGCGATTTCTGCGGCCGCTGTTTCAGGAACGTGGCAAACTTGAAAGTTCACATATCGTACGCGCACACGGGATGTTGCGAATGTACGATTTGCGgagctaaatataaaaatcagtgGTGTCTAGCTCGCCACAGGGCTAAAGTACACAACGCTAAGGACTACGGATGTACTAAATGCCCCGAAAAGTTTCCGTCTGCATACCACAGACAGAAACACTTGATAAAAGCGCACGATATAGGGCATAAGTGCTCGTATTGTGGCAGAATGTTTACGAGGAATTCTTTCATGAAAGACCACATCAGAAGGACACATTTGAGGGAGAAAAACGTACCGTGTTCCGTGTGTAACGAGAGGTTTTTTGACAATTATCTGTTGAGGATGCATATGGTGAAACACGACGGGGAGAGAAAGTTCACTTGCGACGTTTGCGGCAAAGCCTTTTTGAGAAGGAGTAATTTACAATCCCATATGGAcatgcataaaaaatatggacaTGTGTCTGTGCCAATTTAA
- Protein Sequence
- MRFLWQAIWETLCHGRAYKKAAFEGEECELSSVFREVFRRNQTEDNTATAHRDGRASEIRRKNLITLFNNTTIFPFKWRSNFLCFYCGRIYKEYMEFKKHTKSHGRCTTKDPSLRIINGKYIEIKIDVSEIICNICDESFNSLDDIIEHIIGKHNLKYDTDVNITYQAYRLKDFKCLHCDSQFSYFGYLIHHVNSSHPQENFVCVECGASFNKSNYLMFHMRNFHRKEGYSCNQCQLKFDSYHSLRSHRQSAHLRNCKNCDFCSDSRILLQRHIQAEHPEDGNVKCSYCDRKCRSTDGLAVHMRKCRIKLEKQKKDNSLPHNNISANMKPKKNSNLMQIRQNVQTIINMSTAVPFSFFNRFSCFYCSKKFSEFHYLKEHTNLEHPICDIKAKSMMAMKGKHLRVKVDISSLSCKVCSQSMSGLDVLIDHLITEHKVHYDKSVNDCLEPYRMDKESVACPQCPQQFSYFGSLLKHINSSHNDNNIICVFCGMSFRCETNLRSHISRLHKREGYKCKICDLDFNSRDALQTHAGNTHGTKISKCAECGQAFSSKNVMRRHLIDVHGIGQKCVHCGKLFPKKCLMLAHVRSTHLKEKNVQCHMCQQKFFSGCLLKKHLVKHFGERNFHCDVCGKQRKNLRILFNNTTIIPFKWRGKFLCFYCAKSYSEYPEFRKHTKSHGPCTTKDYALKVIKGNHIEIKVDVSEIICDICNEPFGSMSEIVDHLVGKHTMEYDKSVEIPFQAYRLIDFKCLFCDQQFSYFGSLVSHVNIMHPQNSFICDDCGATFNKKRDLAVHMRNLHRQGGYACDQCTGNFDTYYALRTHQNTTHFRKCKNCNLRFLSPVLLQKHMKAEHPEDGNVKCSFCGKECHSKNGLAQHMARCKVKMIAQPDEPPMFDSFPADVGMKPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKFSCFYCSKKFTEFEELKEHTILEHPICELKSKCMKKCKGERITVKIDIACLSCKICSQPMTELDALIDHLISEHKANYDKSFTRCFEPFKIIKDNLPCPVCPERVFRYFATLLKHLNAEHSNNNRICDFCGRCFRNVANLKVHISYAHTGCCECTICGAKYKNQWCLARHRAKVHNAKDYGCTKCPEKFPSAYHRQKHLIKAHDIGHKCSYCGRMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHDGERKFTCDVCGKAFLRRSNLQSHMDMHKKYGHVSVPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -