Pint012192.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050479.1:8946464-8949784[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-09 2.1e-06 27.6 0.0 2 41 34 73 33 75 0.94 2 2 0.92 8.7e+02 0.0 0.0 25 42 132 150 132 152 0.91
Sequence Information
- Coding Sequence
- ATGGAACCAAAATcgaaatctaaaaatatgaagCCGAAAAGGAGAGAAAAATTGGTGGGTGTGTCGAAAAAAACAAACAGGCGTCTTTTTTCATACAGAGAGGAAGATCTTACAAATGCCATagaatctataaaaaataagataatggGTTATAGAGAAGCCTGTCGATTTTATGGCGTGCCATTTGCCACAGTGCATGATCGTCTTAGCGGTAAAGTAGCAATCGACAAAAAACCAAAAGTTGGTCCAAATCCTGTCTTAGGAGTGGAAGGAGAGGCAAAACTCACTAAATGGATTCTGGATATGGCAAAATGTGGGTTTCCTATAAGTAAACAAGGGCTGCTAGAGAGTGTATCGAAAATTATAGCAAAAACTGGTATCAAGACTCCATTTAAATATGGAATGCCAGGAGATACTTGGTATCAAAAATTTCTTAAGCGGCATCCAGAAATAAGCATTCGTGAACCCGAAGGTATTAATAATGCAAGAGCTGCCATAACTGAGAACCGCATCAGACATTGGTTCAAAGATCTGCGAAATTACATTATGTCTATTGATGCGATGGATATATTTGAAGATCCAGATAGAATCTTCAATGGTGATGAAACAGGGTTTTCCCTATGCCCAAAAAGTGGCAAAGTTTTAGGACCAAAAGGTTACAAAAacttattcataattaaaaaaaataatgaaaaagaaaatataacggTCTTATTGGTATTTTCAGCAAGTGGAAAATTGTGCCCACCGTTAGTAATTTTTCCATATGTAAGACCCCCAAAAGCATTGGTCAACAATATGCCCGAGTCATGGGTTCTTGGTCGTTCTGAGAGTGGCTGGATGAAAAGTGATGTATTCTTTGAATACGTCACCAATGATTATAATGATTggctgataaaaaataacgttaaGAAGCCCATTCTCTTATTTATTGATGGACATAAATCGCACATGACTTATGCTTTGAGTGAATTTTGTGAAGCAAATGATATAATTCTATACGCATTGCCACCAAATAGTACTCATATGCTCCAACCGGCTGATGATACACAACTAAGAGTAGAGAAAGAGAGAAGAGAGAAAAATTCAAGATCGAATAAGAAAACTACAGCGACTGCAAAAGAGTTTGATGCAGCAATGAAagtaatatcaataattaaaaatgaactgTCGGAACGTAATATAGATTCAGAAGTCGTTTTAAAAGAGATAGAAATTTCTAAAGCAACATATCTCCAAAATAGGCGTTCTAAATCAAAGACGCCTCGAAATTCTGCGGCCTCAGATCTTAGTACATCCATTCTGCCTATTGAGATGTTAGCAATGTTTGACGAACCTGAAACAAATATGGTAAAAGATGATGAAGATCCTCAAGCTGCAGCACCAAATCAACTTACAACTAATATGACAACAGACATCACTCCAGAAAACTTAAGCTTTGAAGAAACTGAAACCAAAGAAGAGCAAGGGGCAGACCCCGATGGCGAAGAAATGGCCAAAGACCACAAAAAGTACCTCAACAAGCAAGCTAGATAA
- Protein Sequence
- MEPKSKSKNMKPKRREKLVGVSKKTNRRLFSYREEDLTNAIESIKNKIMGYREACRFYGVPFATVHDRLSGKVAIDKKPKVGPNPVLGVEGEAKLTKWILDMAKCGFPISKQGLLESVSKIIAKTGIKTPFKYGMPGDTWYQKFLKRHPEISIREPEGINNARAAITENRIRHWFKDLRNYIMSIDAMDIFEDPDRIFNGDETGFSLCPKSGKVLGPKGYKNLFIIKKNNEKENITVLLVFSASGKLCPPLVIFPYVRPPKALVNNMPESWVLGRSESGWMKSDVFFEYVTNDYNDWLIKNNVKKPILLFIDGHKSHMTYALSEFCEANDIILYALPPNSTHMLQPADDTQLRVEKERREKNSRSNKKTTATAKEFDAAMKVISIIKNELSERNIDSEVVLKEIEISKATYLQNRRSKSKTPRNSAASDLSTSILPIEMLAMFDEPETNMVKDDEDPQAAAPNQLTTNMTTDITPENLSFEETETKEEQGADPDGEEMAKDHKKYLNKQAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -