Pint009466.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050475.1:7956176-7958626[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-13 1.1e-10 41.3 0.0 2 37 12 46 11 52 0.91
Sequence Information
- Coding Sequence
- ATGTCTCTTTCGAGACCCATATTACAATACCCCGAAGAGAAACTTACTCAAGCTTTAGACGCTATTAGAAATGGCATGTCTATTAGAGAAGCTAGTAGAAACTATGGGGTTCCTCGAGGCACAATTCAAGATAGACTTCATCTACGAGTTCCTGAAGGGCCTAGAAAAATGGGTCCAGACTCCTTCCTTAACAAATTAGAAGAAGCAGAAATTGCAACGTGGTTGAAAGAGATTGCAACTTGTGGTTTCGGGATGAAACCTGACAACCTACTTAATACTGTCCAGGATATGATGATAGAAGACGGCAGGCCTAACCCGTTTGTAAATGGAAGACCAGGCAAGAAGTGGATGAATTCTTTTTTCAGACGTAACAATATGTTTTCAATGAGAACACCTGAAGCTATTTCAAAGGGAAGGGCAGTAATCACTGAAGAGAGTATAAGAAAGTGGTTTGAGAAACTCACAGATTATCTAAGGGAAAATCAAGCACTCGACGTGTTAGAGGACTCTAAAAGAATACTAAACGGTGACGAAACAAGCTTCATGCTATGCCCAAAAACTGGAAAAGTGATAGCACCCCGaggatataaaaatgtataccaAATAGTAAAGGGCAAAGAAAAGGAAGCAGTCACGGTTTTAGCTTTTTTTTCCGCTATGGGCGATATTTTACCTCCCTGTGTAGTTTTCCCGTACATCAGACCCCCCAAAGATGTTATAAATAGTATGCCTGATGGTTGGTTTCTCGGTAAATCTGACACTGGTTGGATGAAGGCAGACATTTTCTTCgattatatttctaaatgtcTATCCAAGTGGATAGATGAAAACAAAGTGAAAAAACCAGTGCTGGTTTTTGTCGACGGTCACAAAACTCACATGACAATGAAGCTCAGTAAATACTGTCATGAAAATAACATCATTTTGTACGCACTACCACCTAATACAACACATATGATGCAACCAGCAGATGTTAGCGTTTTTAAACCACTGAAATCTGAATGGGCAAAAACGGTTCATGAGTGGTGTTCACAGCCACAAAACGCTAACACTGTGTTGACAAAATCTTCATTCTGTCCATTATTGGAAAAAGTATTAAGCAAAGAATCTCTGAATCAAGCCATCAAAAATGGATTCCGTAAGTGTGGCCTTTTTCCATTCGATCCAAATGCAGTCGACTACTCAAAATGcgtgcaaaatattttagagaAAATTCATGCACCTGCCAGCCAGATAACTTCATCAAGGCAGTTCAAAAAAAGAGATTTCGACATCgcatcaaaaattataaagcaTTTGGGAAATGATTTGACTGCAAGAGGAGTTGATGTGAATATTGTACTCGAAATCGTTGAAAATGCGAAACAGGTTGAAGCATTAAATAATTCAGTAAGTAGTAATACTACAGAGAGAACAGTTGGAGATAATGAACAAAGCGTAATATTTGAGGAAAGAACAGAACCTGGATTGACAGTAACGAATGCCAGACCTATTATCaatgaaactgaaataaatggaGCCAAAGAAGAATTACACGTAATAAAcactgaagaagaaaataaaaacaaaaaaaagactgaaataaaaagtgatATAACTaggatatataataaagaagtaGATAAACGTAGAATAAGTACATCACCGTCCGAAGTACTAGATActaatagtttaaataatatgacaCTTGGCGATCTTACTTTTATCAACAATAATTTACTGGACGATGCTATTCATGTAAGCACATTCGAGGTCAATGATAATGCAATATTAGTACCCATTGGAGACAACTCACCGATGTCAAGAAGTGAACCGACGTATTACCAAAAACCTAAGACTGATTCTGTGATACTCATTCGATCACCGAAAGTATCACCTTTTGTTCGAAAGCATCTCATTATTCCGTCACCTATAAAGAAAACCGCATCTCCTAGAGTAATGAACAGAATTGGAGCAATATCGTCTGAAGAATGGAGgcaatttgaaattatgaaaGAGGatgagaaacaaaaaaagaaacatgcCATTGAAGAAAGAAAGTTacagagaaagaaaaataaagaagaaaagcAAAAGCAGAAAAATGAaaccaagaaaaataaagctgTGAATTCTACCAAACGTAAAGTGAAAggacttaatacaaaaaagaaaattgatgacTCTGATCCAGAATTCATTatgaaaagtattaaaaaaagaaaattaaatgatatgaaagaaagaaaaggaGAAGAAGCAGAAGAAGCAGAGCAGACTAACTGTGATCCAGAGAAAGCTAAACCAAATAAGATTAAAATCCTCAGTGATATAGTCATAACACCTGGAACTCCTGTGAAACAaactaataaagaaaatatagttcTGAAAAAAATGCTTAATCGTAGAGAAACCTTTAGAAATGAAGAAGAActtcagaattttttaaatagtgatTTTAATGATGAATAA
- Protein Sequence
- MSLSRPILQYPEEKLTQALDAIRNGMSIREASRNYGVPRGTIQDRLHLRVPEGPRKMGPDSFLNKLEEAEIATWLKEIATCGFGMKPDNLLNTVQDMMIEDGRPNPFVNGRPGKKWMNSFFRRNNMFSMRTPEAISKGRAVITEESIRKWFEKLTDYLRENQALDVLEDSKRILNGDETSFMLCPKTGKVIAPRGYKNVYQIVKGKEKEAVTVLAFFSAMGDILPPCVVFPYIRPPKDVINSMPDGWFLGKSDTGWMKADIFFDYISKCLSKWIDENKVKKPVLVFVDGHKTHMTMKLSKYCHENNIILYALPPNTTHMMQPADVSVFKPLKSEWAKTVHEWCSQPQNANTVLTKSSFCPLLEKVLSKESLNQAIKNGFRKCGLFPFDPNAVDYSKCVQNILEKIHAPASQITSSRQFKKRDFDIASKIIKHLGNDLTARGVDVNIVLEIVENAKQVEALNNSVSSNTTERTVGDNEQSVIFEERTEPGLTVTNARPIINETEINGAKEELHVINTEEENKNKKKTEIKSDITRIYNKEVDKRRISTSPSEVLDTNSLNNMTLGDLTFINNNLLDDAIHVSTFEVNDNAILVPIGDNSPMSRSEPTYYQKPKTDSVILIRSPKVSPFVRKHLIIPSPIKKTASPRVMNRIGAISSEEWRQFEIMKEDEKQKKKHAIEERKLQRKKNKEEKQKQKNETKKNKAVNSTKRKVKGLNTKKKIDDSDPEFIMKSIKKRKLNDMKERKGEEAEEAEQTNCDPEKAKPNKIKILSDIVITPGTPVKQTNKENIVLKKMLNRRETFRNEEELQNFLNSDFNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072666; iTF_00072667; iTF_00072668; iTF_00072670; iTF_00795630; iTF_00795629; iTF_00795631; iTF_00779439; iTF_00825551; iTF_00825553;
- 90% Identity
- iTF_00072666; iTF_00072667; iTF_00072668; iTF_00072670;
- 80% Identity
- -