Prub006612.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- RTase
- Assembly
- GCA_963576535.1
- Location
- OY754911.1:4436736-4468001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5 1.6e+02 3.5 0.2 2 23 400 421 399 421 0.93 2 12 0.088 5.7 8.1 4.3 2 23 583 604 582 604 0.95 3 12 0.025 1.6 9.8 2.2 1 23 615 638 615 638 0.92 4 12 0.00021 0.014 16.3 0.3 2 23 645 668 644 668 0.96 5 12 0.12 7.5 7.7 0.2 1 23 674 696 674 696 0.93 6 12 0.014 0.93 10.6 1.8 1 23 702 724 702 724 0.98 7 12 0.31 20 6.4 0.1 1 23 832 854 832 854 0.97 8 12 3.4 2.2e+02 3.1 7.2 1 23 861 883 861 883 0.95 9 12 0.0023 0.15 13.1 1.8 1 23 910 933 910 933 0.95 10 12 0.0056 0.36 11.8 1.1 1 23 940 963 940 963 0.96 11 12 0.0063 0.41 11.7 0.2 2 23 980 1002 979 1002 0.96 12 12 0.0013 0.082 13.9 0.4 3 23 1061 1084 1059 1084 0.91
Sequence Information
- Coding Sequence
- ATGACCCAAAACGTTTACAGGTTCCTCATAAACCTAGAACTGAATGACCCAGACCTGGTCAAGAGCTACCTGCCTGTGGACTCCAACGAGCCCATAGCTCTGGACGATGACCAACTTTACGTGCTAGATGACGGAACACAGATCAGAGCTTCACAGATACACTTCGACAACGAAGACACTCCTTTAGATCTGTCGTTAGAAGAACTACCGTTTATAAAAGTGAGCGATGACATCAACGATGTTGTAAATGATGATGTATATGAAGATGTATCTCACAAAATCATAGCCAGTCCTGTTCCTATAACAGATTCTAGTCCAAAACATGGCTTCATTAACTATGTACCCTTCAAACTTGTCTGTAACAACACCACGGGCTTCGAAGCTCAGTTCACGAAGTACCTTGAAACTAGTAACAAAACGTACGCAACACTCAGCACTGTGACCAAAAAGAACAAATCTCCAAGGAGTTTGATAAGAGATAACTTTAATGATAAAGAAGAATTCAGGTACACACGCGAGGAGATCTTGAATATGCTCAAAGACTCTCCAGTAACTAGCATTCCTTATGAGAATAATGAGAAAAAGCACGTGAGGAAGACGGATCCAACGAGAATGGTACAGAAGACAAGCACAAAAGCGATTGATATTGAAGGTTTAGTTATAGGGGATGGGGGTAATAGAAACTGCTTTATATGCGGTAAGAATGTCAGCAATGACAAGATATATCTGTTCGATAAAGAGGATCAGAAGATACACAAATGTTCGCCGCAGAAGAAAACGTCTACGCAACTCAAAATCATATGCGAAATTTGCTTGAACGATAACTTCAGACCTTCCAGAATGAAAGGCGCTAACCAATTCTTGAATTCCGACGAGTATCTTGTTATAAGGAATAATCAACaatacatttttcaaaaaacgAAGAACTTCAAATTTCGAACGGAAAGCAtagacaataaaaaaagaaagaacgaTGAGTTTGTTAAGTTCGAAATAGGTTCCGATGGCGAGATAGTGACGAAGCCCATTGACGATGACGTTATTATGGTTCATGACAGTAGAAAGGATAGTTCGAGCGACGTAGAGATTGTAGAAACGGAAACGGAAGTGGATAAGATCATAGACAATTTGGAGGAAGCGGACGAGGATGTGAAAGTCTTCTTGGGGAAATATGAAGGGGATGAAGTTATTGAGCTTAAATGCAGGTTTTGCGAGCAAGTATTTTCGGCTGTATCAAAAGTGATTGAACACGGTGAAACGCATAAGCATATTATTGAGGACGACGTGGTATTTCCGTGTCCTTTATGCGATTACGGTGCAGAGAACATTTCTGGTGAAGCTAAGAATCATAGTGAAGAGAAGAACATACCAGATATGATTCTCAAAACGGAAGTGAAGCAGGAGGCAGTCAGTAGTGACGACGAGATATGGATAGTACAGACAGGGGACGACGCGTCACAACATCTGACTCAGTTATTGGAGGCTGCGAAACTAGACAACAATGAGGATAAAAGCAAGAATTGTCACGACTGCTGTAACACGTTCCCGTCATCAGAAGCCTTGGCTGCACACAAGTGTCGTGGACAGAAGCGGAGGTCGGTCGATAAAACTGTGCTTATACCCACCGAAGAGGATTTTATTAGAAGGGCCCAAGGGAGGCGACGAGCTGTCGTCTCATCAGGACAGAGTGATCAGATACagaGGCACCCTAAAAAGTTGAAAGACCCATCTGAGCCGCAAATTGTCACGTGTCATAATTGTAACCAGTCGTTTACGTCCAAAGTACGGCTAAAATTCCACATGCAATTCCACGAAAAGTCATCGATGCTGGCAGACGGACAGTACAAATGCTCGCAATGCGACGGAACATTTGTGACCGAAACTCAGCTGTTTGACCATGTGCATTTCACACACGAGAAAACCAGGAGATGGCAATGTCCAGTGCAAGAGTGTGGAAAAACATTTTATCTAAGGGCCACACTTACAAAACACAGTCGCATTCACACCGACACGCGGCGGTACGTCTGTGTGACATGCGGCAAGAGATTTCTGGACAAGCAGACCTTGGACGAGCATGGAGTCACACACTTACAgATAAAGCCATACCAATGCCACATCTGCTTGAAGCAACTAACGCGCGTCTCCCGTCTCCGCATGCATGTGAGGGCTCACGAAGAGGCCCTGGCGCCGACCCTGCTCCTGGTCTGCCGGGTATGCTGCAGAGCTTTCAGAGATGGCCAGGAGGCACAGGAGCATGCTTCGAAATCGGCAGAGTGCCTGGAAGCAATCGTAGGTGAAGTTAAGACTGAGGAGGGAACGGCAGTCCAACTCTCCCCAACAAGTGGGATTGTACGGCAGACCAAACAAATTATTGAATGCTCCTCTCCCAAAGCCCGCGTTCCTCGCCAAGTGTCCTCTCCTCTAGCGGCTCCTCTCTTGTCGACGTTAACTGACGAAGCACCACTCATAAGAGTTGTGGAGATCGAGAAAGCGTTCCGTTGTGAATACTGTGAGGAtgTGTTCTACATCGAAGACGGTCTGAACATCCACCGTGCTATACACAAAGGTGTCAAAAATCCCTTCACATGCCATATCTGCAAAGTTAGCTTCGCAACCTATTCCAGATGTACAACACATAAAACCACGCATGGGTTCTACAAGCGGCCAGTAGCAGGAAATGACGTCACCAGTGTGGTCGGATATGGAGGCTTTCCTACTGTCAAGCACTTTCTATGTGAGGATTGTGGTCGGTCTTACCTCCACTGGACGTATCTACAAGTCCACAGAAGGATGAAGCATCCAAACGATAACTATCTTCATAGTTGTAACCAGTGTGAGATTGCGTTTCCTAACAGTTGGAGTCTAGCATACCACAGGAAAAAACAACACGGCAAAAGTGGCTCAGAAGAAACGAAGGCAGTTCAAAACTATAGAATACCGTGCCGGGATTGCGACGAAGTGCTACCAAACAAAACTGCGCTTTACAAGCATAGGAAGAAGGAACATACTGGCGTGTCGATGCAAGATACCAACTCTAGGGTTGTCAGCTCTGCATATACTAGTCAGGGAGAAAGGTATCCAATCGATCTTCACAACTTGAACACAACTTGGTTCCCTCGTCCCCATtcgacggtttttgaacagctCGCTTGGTTAGGTCACAGCGTGCGCGGCTGGGCGTGCTCGCGCGCGCGCTGCGGCAAGCGCTACCGGAGCCGCGCGGAGCTGCGCGCGCACACTCGCCTCTACCATCCCGCCACCGTCGCCGTACTGGAGGTTCAAGGAAGAAATATCAGTCCAGAGGAAGCGTTAAATACACTAGTTAAGAACAACATCAGCCAAGACAGAGTCCTCGAAATCAATGTGATGTATTTCGCCAAGGGCGCGACTAGCATAGTCCCAATGAGCGCACGCGCACTCGCCATGTTGCGGACTGTACCGCGCACTGCGCTCTCTCTGCCGAGGGAAATGACTGCCGAACAACACTACGTTAACGAACTGGCTAAAGCTATAGTCAACATTATCACTAATAAAATTGAGATTTGTTTCCCACTCAAACGTACTGCGTCAAAGAGCAAAAAATCATGGGTGTCTGAGGAAATTGTTAATCTAGATTACTTATTGAGAGATATCAAATCGTTTAGTGCTAAGTTTCCCGATAACAGCGCTTTAACAGATAGGGTTGTCGAGTGCCAGAACAGATTTGATAAACTACTAATGTCACAAAGAAGTAGCTTTTACTGCAGTCTGATAGCTGAATCGGGCAAAAAAGCCAAAACTATGTGGGATGTTGTTAAAATGGAGACCGGACGAGGTAAACGGAGCTCTGACTTTATTGAGGCCTTAAAAATGCCTAACGGATCCTCGTTTCTGAATGAAGCTGATGCTGTTAATGCGGTAAATATGCACTTTGTGAGTGCTGCATTAACATGCGGAGCGCCCAACGCCGACGTGCCCGTAGCAATGCGCGCGCTGTCGATTGCTCGACCACCCGCGGACCGCTCGCTTCGTTTTACAAAGTTTACACCCTTTGAGAtattcaaaataatatcaaCAGGGGTAGCACATAAACATACCAAAGATATTTATGACATATCGATATCGCTCCTCTACCACACTGCAGTTTCTATATCATACATCTTCTCTGTCCTATTCAACAGATGCTTAAATGACGGATATTACCCCCAAGCGTTAAAGAATGTCAGAGTTTCACCCCTTTACAAGGGCAAGGGAAAGAAAGAAGCCATCGACAGCTACCGTCCCGTCTCCATAATACCAGGTGTTGCAAAAGTGTTCGAACATGGTCTCAGTACGCGTCTTACTAGGCATCTGATGAACACGGGGTCCCTATCTGACAGGCAATACGCATATCGGGCAGGAAGATCCACTACGGACGTTGCGAGGGAAGTCGTGAGTCGCGTGCTAGGGGCCCGAGAACTGAGCCAGCAGGTGGCTGTCATCTTCTGCGATCTATCAAAGGCGTTTGACGTCGCGGACCACGCTCTACTCGCGGCTAAGCTCAAATATTATGGCATTGACGGATCCGCGCAAAATCTTCTGCTTCATTTTATGACTGAACGATCGCAGATCGTCACAGGAAGAGGAGGGAAAATCAAATCCGACCCGATGAAAACTACCATTGGGGTGGCGCAGGGATCATCGCTGTCGAATATAATGTTTTCCATTCTGCTAAATGACTTACCCGATTGTATAGGCGACGCACACATTCTTATATATGCGGACGATGTGGCGGCGATAGTCGAGGCCCCTAGTCTGGACATCCTAGAGAGAAAGTTGAATGCCGCTGCGGGTGACTTACACAATTGGTTTCACCAAAATGGGCTCATCTTAAATGTAGCCAAAACTAACTACATGCACTTTAACCTTGCGGGGAGGAGTTGTAGGCCAATGACAGTAGGGCTAGGTGCGGAAACGATCACAAAAGTTGATTGTACTTCATTCCTCGGTTTTATGCTGGACAGTGGCCTAACATGGGAAACCCATATTGACAGGCTTTGTAAGAAAGTGGGTCGAGCAAGTTTTGCCTTGTGGCGACTATCTGCAACTCTGAACAAAGAGACTGTAAGGAGCTTTTACTTCGCCTCAGCCCACTCTCTGTTACAATACGGGGTTGAGTTCTGGGGGCGTGCAGCAGACTGGAAGCGCGCATTTAGACTGCAGAAGAGGGCAGTGCGCGCCATTGTTCGGGTCTCGCAAGACACATCCGCTCGACCATATTTTAAATCCCTCGGAATAATGACTGTACCTGACCTTGTCATATACCAAGCTGCACTATATGTAAGGAATCACTTAGATGAATATGCAAGGTACGGCGACGGTCACAGGTACAACACGAGACACGCAGACAGGCTGAGAGCAGTTCCGCGTCGTCTCACGAAAACGTCGAAGCTGATTCGTGTGCTGGGGCCAGCGATGTACAATCGACTTCCGGCCGATGTTAGAGACGCTCCATCGACACAATCCTTTAAGACAAAGTTGAAGAAATGGCTATTAGAGCAATCATTCTATGACTGCGATGAGCTAACTTCCCGAGAGCCCACCCAGCTAGGGTAG
- Protein Sequence
- MTQNVYRFLINLELNDPDLVKSYLPVDSNEPIALDDDQLYVLDDGTQIRASQIHFDNEDTPLDLSLEELPFIKVSDDINDVVNDDVYEDVSHKIIASPVPITDSSPKHGFINYVPFKLVCNNTTGFEAQFTKYLETSNKTYATLSTVTKKNKSPRSLIRDNFNDKEEFRYTREEILNMLKDSPVTSIPYENNEKKHVRKTDPTRMVQKTSTKAIDIEGLVIGDGGNRNCFICGKNVSNDKIYLFDKEDQKIHKCSPQKKTSTQLKIICEICLNDNFRPSRMKGANQFLNSDEYLVIRNNQQYIFQKTKNFKFRTESIDNKKRKNDEFVKFEIGSDGEIVTKPIDDDVIMVHDSRKDSSSDVEIVETETEVDKIIDNLEEADEDVKVFLGKYEGDEVIELKCRFCEQVFSAVSKVIEHGETHKHIIEDDVVFPCPLCDYGAENISGEAKNHSEEKNIPDMILKTEVKQEAVSSDDEIWIVQTGDDASQHLTQLLEAAKLDNNEDKSKNCHDCCNTFPSSEALAAHKCRGQKRRSVDKTVLIPTEEDFIRRAQGRRRAVVSSGQSDQIQRHPKKLKDPSEPQIVTCHNCNQSFTSKVRLKFHMQFHEKSSMLADGQYKCSQCDGTFVTETQLFDHVHFTHEKTRRWQCPVQECGKTFYLRATLTKHSRIHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEALAPTLLLVCRVCCRAFRDGQEAQEHASKSAECLEAIVGEVKTEEGTAVQLSPTSGIVRQTKQIIECSSPKARVPRQVSSPLAAPLLSTLTDEAPLIRVVEIEKAFRCEYCEDVFYIEDGLNIHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPVAGNDVTSVVGYGGFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHPNDNYLHSCNQCEIAFPNSWSLAYHRKKQHGKSGSEETKAVQNYRIPCRDCDEVLPNKTALYKHRKKEHTGVSMQDTNSRVVSSAYTSQGERYPIDLHNLNTTWFPRPHSTVFEQLAWLGHSVRGWACSRARCGKRYRSRAELRAHTRLYHPATVAVLEVQGRNISPEEALNTLVKNNISQDRVLEINVMYFAKGATSIVPMSARALAMLRTVPRTALSLPREMTAEQHYVNELAKAIVNIITNKIEICFPLKRTASKSKKSWVSEEIVNLDYLLRDIKSFSAKFPDNSALTDRVVECQNRFDKLLMSQRSSFYCSLIAESGKKAKTMWDVVKMETGRGKRSSDFIEALKMPNGSSFLNEADAVNAVNMHFVSAALTCGAPNADVPVAMRALSIARPPADRSLRFTKFTPFEIFKIISTGVAHKHTKDIYDISISLLYHTAVSISYIFSVLFNRCLNDGYYPQALKNVRVSPLYKGKGKKEAIDSYRPVSIIPGVAKVFEHGLSTRLTRHLMNTGSLSDRQYAYRAGRSTTDVAREVVSRVLGARELSQQVAVIFCDLSKAFDVADHALLAAKLKYYGIDGSAQNLLLHFMTERSQIVTGRGGKIKSDPMKTTIGVAQGSSLSNIMFSILLNDLPDCIGDAHILIYADDVAAIVEAPSLDILERKLNAAAGDLHNWFHQNGLILNVAKTNYMHFNLAGRSCRPMTVGLGAETITKVDCTSFLGFMLDSGLTWETHIDRLCKKVGRASFALWRLSATLNKETVRSFYFASAHSLLQYGVEFWGRAADWKRAFRLQKRAVRAIVRVSQDTSARPYFKSLGIMTVPDLVIYQAALYVRNHLDEYARYGDGHRYNTRHADRLRAVPRRLTKTSKLIRVLGPAMYNRLPADVRDAPSTQSFKTKLKKWLLEQSFYDCDELTSREPTQLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -