Prub013335.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754919.1:11245555-11251484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00051 0.033 15.1 1.0 1 23 300 323 300 323 0.92 2 12 0.0019 0.12 13.3 3.5 1 19 337 355 337 359 0.93 3 12 0.0002 0.013 16.4 0.7 2 23 365 386 364 386 0.97 4 12 0.16 10 7.3 1.9 1 23 390 413 390 413 0.87 5 12 0.031 2 9.5 1.1 1 23 416 439 416 439 0.97 6 12 0.0067 0.43 11.6 2.1 2 23 591 612 590 612 0.95 7 12 0.47 30 5.8 0.7 2 23 632 654 631 654 0.95 8 12 1.2e-06 8.1e-05 23.3 4.1 1 23 660 682 660 682 0.98 9 12 2.2 1.4e+02 3.7 4.7 2 23 688 709 687 709 0.89 10 12 0.0039 0.25 12.4 5.4 2 21 716 735 715 738 0.94 11 12 1.9 1.2e+02 3.9 0.5 1 19 746 764 746 765 0.86 12 12 0.31 20 6.3 1.6 3 19 778 794 777 796 0.97
Sequence Information
- Coding Sequence
- ATGGACCGCGGCAATGTCCTCATCGACTCCGACATGGCTTATCCTATCCTGTTCATTCCAAAGAAGTGTACAACACTTGAAACAAACTGTGAATTGAAAGATAATGTGTACATTGATGTGAGCATCACGTCTCGGGACACGGAAGGCAACCACACCGGCATTTACAAAGGCTTCTGTAACATAAAGCTGGTGGATTCTTATGGTGTGAGTGTGAGCCAATTGGAGTCTTTGGATTGTTCTACAGAAGATATGGACGACATGCCTATTATTATATCTGAGGCCAATCAGTTTCCTCCATACAATGAATCACAGGTCTGGATTGATCCATCTAGAAGTCCCTATGTCTACAACCACTATGACCCATCTGTTCAAGAGCAGTATTCCATCCGTGAGGCTGGAGGTCTCATCACAGTTGAACAGCACAATACATACATCACTCAGAATGTCTACAACTGCAAGGAATCCAATTTGTATAACAACAAAGAGACAGAACAGTCTCCGGTTAAGGATTTTGATTGCAAAGTGGACAGGAAAGTGCAGGAAATGGGCACCACCACCCAGGTGGATAATAACCTGAATTATTATGAAGAAGATGAGTTTGAGTGTGGTGTGTTCCTGTCACAGCTACCCGAGGAGATAATGAATGCAAATAAGGTCACAACTcgggaaGAAACAACCACCCCGCTTGAGGAAAAAAATGCACTGAAACAGCTCATGTCATCAGATATCCAGTCCACGTCCAAGCAGAGGAAAACAATCTTGTTCCTCGGCCAGGACTCGCAGTCTGGACAGACCATCCAGAACATATCCTACAGTGATCCCATGATCAAGTGCGCTGAACTGGAGGTGGACAATGAAGTTgttatagacaCATCCTCTCCAACCCCAAAGAAGAAGTACCAGTGCGACAAATGCAAGCAGATCTTCGAACAGATATCCTCTTTCCGAAATCACATGGTGGGGTACCACACCAATATCAAGTTCACCCCAAAGGGGAAAGAAATCAGCTTCCAATGCGCCGACTGCGGCAAAAACTTTAAAAGTCAACAAAAGTTCGAGAACCATTGCCTAGGTCATGGAGACCCGGACCTGGAGTGCTCAAAATGCCAAAAGGTTCTTGCTTCCAAATTCTCTCTCAAAGTTCACCAAAAAATCCACAACAGGAAATATCCTTGCAACTATTGTAGCAAGTCTTACGATACCTTCAAAGAAGTGAAATTCCACTTGGAAAGGACACATCTCCTCTATATCTGCCAGGAGGACTGTTCATTTGTCAGCGAAAAGTCCTCTGATTTGGAGACTCATCAGCACTCCCATAAGGCACAGGACAATGAACTTGAAGAATTAAACATTGTAGACACAGATGACATAGAACCGGTGGAATTGAAACCCGAAGTCGAACTACCCTGTCAGGAAGTGATGAAGTCAATCCAAGAAGAAGGGCTAAACCAAAGTCCATCGCGGTCAAACCAAGACATACCAGAATCAAATCAAGATTTGTCAGGGTCAAGCGAAGACTTTATAATTTCAAGTCATGGCTTGTCCAAATCCGCTCCTGACCTCGTGGAGTCAAACATAGAGCTATCGGAGTCCAGTCATGACTTCAGAAGGTCAAGTCTGAGTCTGAAGTCTAATGAGGATTTTTCGCTGACTGAAGATGATAGCGAGACTGAAAAGATACGGCAGGCAGACTCAGTTATTGCTAAAGTCATGTCTACCGAAATATTTCTATTGAGCTCGAAAAAGGCGAGGAGACATCGTTTTCGTAAGTCGTGTGAAGTTTGCTGCAAAACGTTCAACCGAATCGATGATTTGAAACGGCACCTTATCGAGCACATCATAAAGTCTACTTTGGCGAAAACGCCTGTCAACCGCACAGGCAACCTGAACATAACTTGTGAGGTGTGCCAGACCGAGACCTTCAACAAAGTCGACAAATACAAGACGCATCTGCGCGAGCACGCAAAGCTGACAATCTACAAATGCACATTCTGCGACAAATCCTTCAGCGATTCCAGCAACTTCTCCAAACACAAGAAAATACACGGCACTTCCTTCCTGCGATGCGACCTTTGCAATCGCAAGTTTCACTCCAAAAAGATGATCGCGCAACACTTCGACCACCACAACAAAACTTCGCCAGTTCAATGTAGTCATTGCGACAAGACATTCCACTTTGAGTCGATGCTGAATAAACATGTTCGTTGCGCGCACAGGAAGGATGACGCATTAAAGTTTCGCTGCAGATTTTGCGAGCAGATCTTCAGGTCTTTGAAGGAGAAGTGGGAGCACGAATGGTATGTCCACAACGTGAGGAAGATGATTGTCGACTGCCTTATCTGTGGCTCGCAGTATAGGAAGTACTCGGATCTAAAGAGACATTGTTTTGATGAGCATAACATGGACATTCCACCGGCTAAAAAGCTGCTAAAGAAGAGGTTTTCGAGGATTGTTTCTTATGATTGA
- Protein Sequence
- MDRGNVLIDSDMAYPILFIPKKCTTLETNCELKDNVYIDVSITSRDTEGNHTGIYKGFCNIKLVDSYGVSVSQLESLDCSTEDMDDMPIIISEANQFPPYNESQVWIDPSRSPYVYNHYDPSVQEQYSIREAGGLITVEQHNTYITQNVYNCKESNLYNNKETEQSPVKDFDCKVDRKVQEMGTTTQVDNNLNYYEEDEFECGVFLSQLPEEIMNANKVTTREETTTPLEEKNALKQLMSSDIQSTSKQRKTILFLGQDSQSGQTIQNISYSDPMIKCAELEVDNEVVIDTSSPTPKKKYQCDKCKQIFEQISSFRNHMVGYHTNIKFTPKGKEISFQCADCGKNFKSQQKFENHCLGHGDPDLECSKCQKVLASKFSLKVHQKIHNRKYPCNYCSKSYDTFKEVKFHLERTHLLYICQEDCSFVSEKSSDLETHQHSHKAQDNELEELNIVDTDDIEPVELKPEVELPCQEVMKSIQEEGLNQSPSRSNQDIPESNQDLSGSSEDFIISSHGLSKSAPDLVESNIELSESSHDFRRSSLSLKSNEDFSLTEDDSETEKIRQADSVIAKVMSTEIFLLSSKKARRHRFRKSCEVCCKTFNRIDDLKRHLIEHIIKSTLAKTPVNRTGNLNITCEVCQTETFNKVDKYKTHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTSFLRCDLCNRKFHSKKMIAQHFDHHNKTSPVQCSHCDKTFHFESMLNKHVRCAHRKDDALKFRCRFCEQIFRSLKEKWEHEWYVHNVRKMIVDCLICGSQYRKYSDLKRHCFDEHNMDIPPAKKLLKKRFSRIVSYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -