Prub006357.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- ZNF438
- Assembly
- GCA_963576535.1
- Location
- OY754911.1:405824-407845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.018 1.2 10.2 0.1 3 23 354 375 353 375 0.92 2 9 1.7 1.1e+02 4.0 3.6 2 23 410 431 410 431 0.97 3 9 0.0072 0.47 11.5 0.6 2 20 436 454 435 456 0.93 4 9 0.00048 0.031 15.2 2.6 2 20 477 495 476 498 0.91 5 9 0.00029 0.019 15.9 2.7 1 23 505 527 505 527 0.97 6 9 0.01 0.66 11.0 0.6 1 20 533 552 533 555 0.92 7 9 4.1e-05 0.0027 18.5 1.0 1 23 560 582 560 582 0.93 8 9 2.6e-06 0.00017 22.3 3.2 1 23 588 610 588 610 0.98 9 9 9.6e-05 0.0063 17.4 4.9 1 23 616 639 616 639 0.95
Sequence Information
- Coding Sequence
- aTGAGTTCCGGTATTGCTATTTGCAGACTTTGCGCGGAATCGAAACATAACAACAAACAAGTAGATCTCGAATACGATATGCTAAAGCGAGACAAGGTACTAGAACATTTGGCAAGACTCAACTCCACTATAGATTTTAATGACAATAAACTTCCTAGCACGGTATGTTTGGAATGTATTCGTACCCTGGACAATTGCTGTGACTTTGTAGTCAGTGTGGAAAGCGCTCAGAAGGTTCTACACGACTTATTTTACAATCGAACAGCAAAACAGATCGACCTTTCCGACGATATAATTTTTTTCGAAAGGGCTGGTTTGGATGAGTGTGACTTTTTGTCCGAAAGCGATGTTTCCAATGAATCTCAAGACGCAGCAACTCCTAATACTGATGATGATCTTATCTCATTAGCAGATTTGGTTACACATAATCCAGACTCAAGTGTTGGATCTGATGACCCTCTAATATCTAATCATTCGAAATCCAGGACACAAGAGACCCCTTCTGATGGCATCTCCGTGGAATATTTTGGAGTTAATAATCCCGATTCAAGTGTGGGGAATAATGAACATGTAGAAGTTATAACTCTTAAACCTGCAGCTGATTCTGTTGGCATTATTCAGCTAGGAAATTCAGAACCCAATAACACAGACCATAATGTTGGCCCTGATGACCTTGTAAAGGAAACCAATGCCATAATACCTACAGGAAGTTCAGCAAGCAATAATTCAGATAACAATCAGCAGCAGATAATCAGCCTTAGCATTGGCTTAGCTCAAACTATAAGCCATTCAAAGTATAAAAGTAATGAATATTTAGGATTATGTAAAACGAAAGACAATGCTGACACTGATGTACACATAGAAGTAATAACTTCAGATAATGAATCCCAATCAGATGGTAATCCTTTAAAAGCATCAAATAACTTGGACCCTGATGTTGAGTTAgataaatttaaagaaaaaaaaactttgaaaagGAAAGTTCCTGCCGCTGAAAGTTCTTTACTAGACCTTAACTCCCCCAAGCATATCAAGGCTTGGAAAGATTACAACTGGCTATGCACATACTGTGAGACTATATTCCCGACGATAGATGAACTGCGCTCACATTCTATGGAGATACACAGCATCTGTAACCCTTACCGATGTACACAATGCAAACTCCGCCATCAATGCTTAAATCCTTTCCTGCAACACATCACAAGACATATCAAACACCTGAAAGAAACTTGTTTTAAATGCCCTGCCAAGTTTGACAATATGCATAAAGCCAAAAAGCATTTTAAAGTCCATTCCAATAAGATAAGCTGTCCAGGATGCTGCACTACTTTCAAAAATAGCAAAGCACTGAAAGCTCACCAAGAACTCTATCTAGAGTTGAAGtatatgaagaaaataaaaaatccacTAATCGGGGATGACGGATTGACATGTACAGTTTGTTcaagaacatttaaaaaccaCACATCTCTCCGGAAACATCTCCCGATGCACACGGGAAGAAAACGTGATCATGTCTGTGAGATTTGTGGTAAGGAATACTTTGAGAAAAACCATTTGACCTATCATATGGGCACTCATAGCGATGACCGCCCGTTCAAATGTAAAATCTGCAATCTCGGCTTCCAGAGGCAAAATGTCCTAAAAGAACACGTCTGGACACATAATGACAAACTATTTCCCTGTGACAAGTGTGACAAGTCATTCAAACTCCAAAAGCAGCTAAAGTGGCACAGTGCACTTCACGTTGACAAACTGCCATTTGAGTGTGATGAGTGCAAAAAATGTTTTAGAGCCAAAGGTACCCTGAAAAGACATCTACGTGTACACTCTGGAGAAAAACCATTTGTGTGCAAGTTGTGTAGACAAACATTTAGAAACAAATCTAATTTAAATCATCATAGTCTGAAGACACACAATTTAAACATTGCCAGacagaaaaaaactaaaatagtgGTTACAAAAGACACACTGGAATGGAAGAAGGAGATAATGAGAAGAAAGCACACCAAAAGAAACTAA
- Protein Sequence
- MSSGIAICRLCAESKHNNKQVDLEYDMLKRDKVLEHLARLNSTIDFNDNKLPSTVCLECIRTLDNCCDFVVSVESAQKVLHDLFYNRTAKQIDLSDDIIFFERAGLDECDFLSESDVSNESQDAATPNTDDDLISLADLVTHNPDSSVGSDDPLISNHSKSRTQETPSDGISVEYFGVNNPDSSVGNNEHVEVITLKPAADSVGIIQLGNSEPNNTDHNVGPDDLVKETNAIIPTGSSASNNSDNNQQQIISLSIGLAQTISHSKYKSNEYLGLCKTKDNADTDVHIEVITSDNESQSDGNPLKASNNLDPDVELDKFKEKKTLKRKVPAAESSLLDLNSPKHIKAWKDYNWLCTYCETIFPTIDELRSHSMEIHSICNPYRCTQCKLRHQCLNPFLQHITRHIKHLKETCFKCPAKFDNMHKAKKHFKVHSNKISCPGCCTTFKNSKALKAHQELYLELKYMKKIKNPLIGDDGLTCTVCSRTFKNHTSLRKHLPMHTGRKRDHVCEICGKEYFEKNHLTYHMGTHSDDRPFKCKICNLGFQRQNVLKEHVWTHNDKLFPCDKCDKSFKLQKQLKWHSALHVDKLPFECDECKKCFRAKGTLKRHLRVHSGEKPFVCKLCRQTFRNKSNLNHHSLKTHNLNIARQKKTKIVVTKDTLEWKKEIMRRKHTKRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -