Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754932.1:4364494-4366441[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.4 26 6.0 4.4 3 23 49 69 46 69 0.95

2 16 0.23 15 6.8 0.7 2 21 96 115 95 118 0.94

3 16 0.00012 0.0076 17.1 2.5 2 23 139 161 138 161 0.95

4 16 0.0015 0.1 13.6 4.6 1 23 166 189 166 189 0.97

5 16 0.16 10 7.3 4.5 1 23 193 216 193 216 0.95

6 16 0.053 3.4 8.8 3.2 2 23 219 241 218 241 0.97

7 16 4.4 2.9e+02 2.7 2.5 3 20 249 266 248 268 0.91

8 16 0.00011 0.0069 17.3 3.6 1 23 317 340 317 340 0.98

9 16 0.83 54 5.0 0.3 2 23 369 391 368 391 0.91

10 16 0.035 2.3 9.3 0.8 1 23 412 435 412 435 0.94

11 16 0.3 19 6.4 0.4 1 23 440 463 440 463 0.89

12 16 9.3e-06 0.0006 20.6 1.1 1 23 470 493 470 493 0.95

13 16 0.18 12 7.1 2.8 3 23 500 521 498 521 0.91

14 16 0.00016 0.01 16.7 1.8 1 23 525 548 525 548 0.97

15 16 0.0038 0.25 12.4 0.4 2 23 555 576 554 576 0.97

16 16 0.0018 0.12 13.4 4.2 1 23 582 604 582 604 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.4	26	6.0	4.4	3	23	49	69	46	69	0.95
2	16	0.23	15	6.8	0.7	2	21	96	115	95	118	0.94
3	16	0.00012	0.0076	17.1	2.5	2	23	139	161	138	161	0.95
4	16	0.0015	0.1	13.6	4.6	1	23	166	189	166	189	0.97
5	16	0.16	10	7.3	4.5	1	23	193	216	193	216	0.95
6	16	0.053	3.4	8.8	3.2	2	23	219	241	218	241	0.97
7	16	4.4	2.9e+02	2.7	2.5	3	20	249	266	248	268	0.91
8	16	0.00011	0.0069	17.3	3.6	1	23	317	340	317	340	0.98
9	16	0.83	54	5.0	0.3	2	23	369	391	368	391	0.91
10	16	0.035	2.3	9.3	0.8	1	23	412	435	412	435	0.94
11	16	0.3	19	6.4	0.4	1	23	440	463	440	463	0.89
12	16	9.3e-06	0.0006	20.6	1.1	1	23	470	493	470	493	0.95
13	16	0.18	12	7.1	2.8	3	23	500	521	498	521	0.91
14	16	0.00016	0.01	16.7	1.8	1	23	525	548	525	548	0.97
15	16	0.0038	0.25	12.4	0.4	2	23	555	576	554	576	0.97
16	16	0.0018	0.12	13.4	4.2	1	23	582	604	582	604	0.96

Sequence Information

Coding Sequence: ATGGGTCGATGTAACCCCATTTGGCAAGATGTGAAACCAGCTGGAAGCGTGCAATTCAGAGCTAATGAATGCAGGCGGAGGAATCTTCAGACTATAGTCAACAACACCACTGTTATACCGTTTAAATGGCGCGGAAAATGTTTATGCTACTTCTGTGGAATAGATATACCATCACATCATGACCTCAAAGAGCACATGAAATCACACGTTCCATGCTCGACTACCGAGCGGGCAATGAAACTCATAAAATGCGGAAATGAAACTAAAGTAGACGTCTCTGAAATTAAATGCAACGTTTGTTCAGAAGACTTCGCTGAAATTGATGATTTGTTATCACATTTGAAATGTAAACACAAGCTCTGGTATAATCACGATGTGTCACTAACACTCGCGAAATACCGACTGGAAGATTTGAAATGTCTTGTTTGCGGCAagattttcaataaattttgtaATCTCATACGGCATATGAATCAGAGCCACCCTGATAATTGCTTTCAATGTGATACCTGTAGTCAAAAATTCAATAAACAGCGGGATTTATCTCATCATGTCAGAAATTATCACAGGAAAGATTACAGCTGCCCCAAATGTTCTCTCTCGTTTTCATGCTTTCAAAATCTTCTCAAGCACAAAACTAAGGAGCATTTGTCTAAGTGCAATCTTTGCTTCCAAACCTTTTCTTCGTATCAGAAACGCCTGAGTCACATGAAAAAGGAACATCAATTAGACGATGGAGGAATGTGTGGATTTTGTCTGAAACAGTTTCACACAAAACACAGTTTTTTGGACCATGCCACTAGAGGCGAAGTCTCCATAAAAGACGAAGAATCGGTTGTAGTTGTTGACGATGATGATAAGAATAAGAACGTAAGAGATCTCAGAGCTGGCATTGCTTGCATCATCAATATGACCGCTGCAATGCCTTTCAAGTTCTTATATAGCAAGTTCAGATGTTTCTATTGCCCGAAAGACTTTACAGTTTGCGACGATCTTAGGCAGCATACGAAAACTGAACATCCCATATGCGAAACAACATGTCATGCCATGAAGCTGCGTGGGAGATCCGAAGGGGTGAAGATAAAAGTAGATACATCTTCTCTATATTGCCAAACGTGCTTTGAGAAGTTTACCGATTTCATCAAAGCGATCAATCACTTGGAAGTCGAGCACAAAGTTGTCCTAAATAAATGCGTTGATATATTCCGACCTTTTAATTTGGTACATGATAAGTTCCGCTGTTTGTTTTGTGACTTGGAATTTAGATATTTTAATCTGTTGCTGCAGCATGTTAATGCGAGTCACTCTGGTAATCAATATATTTGTATATTCTGCGGTAAGGCTTTTCTTTCGTATCAAAATCTTCGCGGTCACATTTCCCAATACCATTCAAACGATAGTAACAAATACAATTGTGAAGATTGCAACCGAAGCTTTCAAACTAACGACAGTTTGAAGCTACACATGGGCAAAACACACGACAGAAAGGTCATTAACTGTCAGCAGTGCTCGGAAAAGTTTATCTCCCACTATCATAAAATGAGGCACATTGTGCAAGTTCACGACGGTGGCCACAAATGTTCTTACTGTGGTATCGCCTTCATTAAGTACTCGTATATGATCAATCATGTTAGACGATCGCATCTTAAAGAGAAAAATGTCCAGTGTACGTTGTGTAACGAGCTATTTTTTGACGCGCAAAGTCTGAAGATGCACATGGTGAAACATGTTGGCGAACGGTCGTTCCGCTGTGACTATTGCAAAAAGTGTTTCCTGAGAAAGAAAAATCTTCGAGGCCATGTGGCTCTTCACCTTAAAAACGGCAGAAATCCTTTAATCTAA
Protein Sequence: MGRCNPIWQDVKPAGSVQFRANECRRRNLQTIVNNTTVIPFKWRGKCLCYFCGIDIPSHHDLKEHMKSHVPCSTTERAMKLIKCGNETKVDVSEIKCNVCSEDFAEIDDLLSHLKCKHKLWYNHDVSLTLAKYRLEDLKCLVCGKIFNKFCNLIRHMNQSHPDNCFQCDTCSQKFNKQRDLSHHVRNYHRKDYSCPKCSLSFSCFQNLLKHKTKEHLSKCNLCFQTFSSYQKRLSHMKKEHQLDDGGMCGFCLKQFHTKHSFLDHATRGEVSIKDEESVVVVDDDDKNKNVRDLRAGIACIINMTAAMPFKFLYSKFRCFYCPKDFTVCDDLRQHTKTEHPICETTCHAMKLRGRSEGVKIKVDTSSLYCQTCFEKFTDFIKAINHLEVEHKVVLNKCVDIFRPFNLVHDKFRCLFCDLEFRYFNLLLQHVNASHSGNQYICIFCGKAFLSYQNLRGHISQYHSNDSNKYNCEDCNRSFQTNDSLKLHMGKTHDRKVINCQQCSEKFISHYHKMRHIVQVHDGGHKCSYCGIAFIKYSYMINHVRRSHLKEKNVQCTLCNELFFDAQSLKMHMVKHVGERSFRCDYCKKCFLRKKNLRGHVALHLKNGRNPLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -