Prub021429.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754932.1:90077-92537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0057 0.37 11.8 0.2 1 20 122 141 122 143 0.95 2 15 0.23 15 6.8 3.0 1 23 173 195 173 195 0.98 3 15 0.027 1.7 9.7 1.3 3 23 201 222 200 222 0.94 4 15 0.0099 0.65 11.1 2.6 2 20 226 244 225 246 0.93 5 15 0.0045 0.3 12.1 0.4 1 23 255 278 255 278 0.94 6 15 1.5e-05 0.00098 19.9 5.0 1 23 284 306 284 306 0.97 7 15 2.9e-06 0.00019 22.2 2.3 1 23 313 336 313 336 0.97 8 15 0.024 1.5 9.9 0.9 1 21 349 369 349 373 0.92 9 15 0.00031 0.02 15.8 1.2 3 21 481 499 480 500 0.95 10 15 0.22 14 6.8 0.9 3 23 533 554 532 554 0.93 11 15 0.021 1.4 10.0 0.3 2 23 560 581 560 581 0.95 12 15 0.00032 0.021 15.8 0.7 1 23 613 636 613 636 0.94 13 15 5.1e-05 0.0033 18.3 1.1 1 23 642 664 642 664 0.97 14 15 3.5 2.3e+02 3.0 1.2 6 23 707 725 700 725 0.86 15 15 0.09 5.8 8.0 2.6 1 23 733 756 733 756 0.90
Sequence Information
- Coding Sequence
- ATGGAGGGCGCGCCTGGGATCCCGCACCAAATCTGCCATCAATGTGCGTCTCATGTCACCGCCTTCCTGCCTTTCCTAAAGCTGTGCCGAGAGTCGGCCGCGCGGTGGACCTATCTCAGCGAACGCCTGCTTGATACCTCCTCTCGCACTGAACGCACTAAAGCTAATGCAGCATTCATCTACGTAGGCGATCGCGTCCGAACCGTGCTAGAACGAAGGGTGAAAACAAGAAGTCGCGACGACAAAAATATACTGATGCGGATAAATCGTCGGCGAAAGGAAACTAACGAGAGACGACAGCCGGTCAGAGGGACAGTTCCCAGAGAAGAGTTTGAAGGAATCAGACAGTCGAAATCGACATTTTACAGCTGCGAAGAATGCGGAACGGAGTATAAGAAGCTGTCTGAGATCAATCACCACTTGGCTAACCAGAACAAGCGGCTGTGCAGGCGATGCCACGAGATAGTGAACCTCAAAACATTTGCGGATCACTTGCAAACGCATCAGATCCCTTTCTTCAAATGCACGGTTTGCTCCCTTCCTTTCGAGTGCAAGGAGCGACttgaaaaacacaaaaaaatccATCTTGGAAGGAACATGTGCTCGGAGTGCAAAAGGACCTTCCCCACACCCGACATCCTAACTCTGCATGTGCACAGAAAGCACGAAGCAGATGTCTGCAGCAACTGCACCAAGAAGTTCTCCAATAGAATCTGCTTGTTCAAACATAGAAGCGAATGTGGCTCCAAAACAACCAAAAAGTTTACGTGCGATTACTGCTCCAAGGAGTTTGGCGATAGAAGCGTGATCAAATCCCACATAACGTTGGTGCATGTCAAAAGGTTGGTGCATCAGTGCGAACACTGCGGTAAGCGGTTCAACAGCGCGAGCCACCTCGAGGAGCACAACGAGACTCATGACATCATATCAGACAGATACGTCTGTACGTACTGCGGTAAAAAGTACAACTCGTCCGGAAGCTTCCGAAGGCACCTGAGATTGAAGCATTATAGATTGAATCCGGAGCTGAAAAACAAGGTCAAGTACTCGTGCGATTTCTGTTCGAGTGATTTCATCAGCGAGAAGAATCTGAACAATCATCTGAATGCGAAGAAACATAAGAATAAAGTTCTTAAAAAGGAATCTGCGATCAGAGAAGGTGTGGACGAGGACGCCGACGTCCTGCCGCCGGGGCTGTGCGGCGCGTGCGCGGCGGCCCTCCTCGGCGCCGCCGCCTTCAAGCGTCTCTGCGACACCTCCGCCGTCCGCTGGCGCGCAGCGGCCGCCTGTCTCGCGCGGCTGCAGCGCCACGCCGAGGAGCGGACGCTGTTCCTGCTGTGCGACAATAGCGACGTCCTGCTCTGCGAGCGACGCTGCGacagcgcgcgcgccgccgcgacCGCGCTCCGCGACCTGCAGCGCGACCGCGTGCCCAGCGCCTGCCCCACCTGCGGGAAGAAGTGCCGGTCGCGCGACGCGCTCAGCCGACACCTCAAGCAGAGCGTGAGGAGCGTCTGCGCCGAGTGCGGCCTCGTGCTGCCGCGGGCGGAGCTGCCGCGCCACCTGGCCGCCGCGcaccgcgcgcgcgcgccgcactGCAGCCTCTGCTACGAGGTGTTCCCGAGTCGCGCGCACGCGGCGCGGCACGCGGCGCGGCAGCACGGCCCGCGCGCCCGCACGTGCGGCGCGTGCGGGCGCGGCTGTCGCAGCGAGCGCGCGCTGCGGGCGCACGCGCGCGCGCACCGGCCGCAGCGCTGCGCGGCGTGCGGCGCCACCTTCGACAACGACCGCTGCTACCGGCACCACGCGGGGGCGGGGGGCTGCGGCGCCGCCACGTACCGCTGCGAGCACTGCGGCGCCGCGTACGACAAGAAGCCGTCGCTGAAGGTGCACATGGTGCAGAAGCACCTGCGCGTGCTGCCGTTCGCGTGCGCGACGTGCGGCAAGCGGACGTCGACGCGCGCGCACCTCGCGTCGCACGAGCGCACGCACGAGGCGGCGGCGACGCGCGCGCGGCTCGCGTGCCAGTGCGGCGCCACGTTCCTGACGGCGCTCGGGCTGCGGCTGCACGCGCGCGCGCACAGCGGGTCGCGGCCGCACGCGTGCGCGCACGCGGCGTGCGGCCGGCGCTTCGTGTCGGCGTCGCGGCGGCGCGACCACGAGCTGCGCGCGCACGCCGCGCGGCGCGACCTGCCGCACgcgtgcgcgcgctgcgccgccgccttCTGCCGCCCCGGAGACCTCAGGAAGCATCGCGCGCTCTGCCATCGCGACTAG
- Protein Sequence
- MEGAPGIPHQICHQCASHVTAFLPFLKLCRESAARWTYLSERLLDTSSRTERTKANAAFIYVGDRVRTVLERRVKTRSRDDKNILMRINRRRKETNERRQPVRGTVPREEFEGIRQSKSTFYSCEECGTEYKKLSEINHHLANQNKRLCRRCHEIVNLKTFADHLQTHQIPFFKCTVCSLPFECKERLEKHKKIHLGRNMCSECKRTFPTPDILTLHVHRKHEADVCSNCTKKFSNRICLFKHRSECGSKTTKKFTCDYCSKEFGDRSVIKSHITLVHVKRLVHQCEHCGKRFNSASHLEEHNETHDIISDRYVCTYCGKKYNSSGSFRRHLRLKHYRLNPELKNKVKYSCDFCSSDFISEKNLNNHLNAKKHKNKVLKKESAIREGVDEDADVLPPGLCGACAAALLGAAAFKRLCDTSAVRWRAAAACLARLQRHAEERTLFLLCDNSDVLLCERRCDSARAAATALRDLQRDRVPSACPTCGKKCRSRDALSRHLKQSVRSVCAECGLVLPRAELPRHLAAAHRARAPHCSLCYEVFPSRAHAARHAARQHGPRARTCGACGRGCRSERALRAHARAHRPQRCAACGATFDNDRCYRHHAGAGGCGAATYRCEHCGAAYDKKPSLKVHMVQKHLRVLPFACATCGKRTSTRAHLASHERTHEAAATRARLACQCGATFLTALGLRLHARAHSGSRPHACAHAACGRRFVSASRRRDHELRAHAARRDLPHACARCAAAFCRPGDLRKHRALCHRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -