Basic Information

Insect: Plemyria rubiginata
Gene Symbol: ZIPIC
Assembly: GCA_963576535.1
Location: OY754922.1:7794647-7801466[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00013 0.0084 17.0 2.0 1 23 257 279 257 279 0.99

2 10 0.68 44 5.3 1.1 2 20 287 305 286 308 0.89

3 10 0.017 1.1 10.4 3.4 1 23 339 362 339 362 0.97

4 10 0.00037 0.024 15.5 0.3 1 20 402 421 402 422 0.94

5 10 0.0019 0.12 13.3 0.0 3 23 436 456 435 456 0.97

6 10 0.00027 0.018 16.0 0.1 2 23 464 486 464 486 0.95

7 10 4.4e-05 0.0029 18.5 0.9 2 23 497 518 497 518 0.97

8 10 2e-05 0.0013 19.5 1.7 1 23 524 546 524 546 0.99

9 10 1.5e-06 0.0001 23.0 0.7 1 23 552 574 552 574 0.94

10 10 2.5e-06 0.00016 22.4 0.5 1 23 580 603 580 603 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00013	0.0084	17.0	2.0	1	23	257	279	257	279	0.99
2	10	0.68	44	5.3	1.1	2	20	287	305	286	308	0.89
3	10	0.017	1.1	10.4	3.4	1	23	339	362	339	362	0.97
4	10	0.00037	0.024	15.5	0.3	1	20	402	421	402	422	0.94
5	10	0.0019	0.12	13.3	0.0	3	23	436	456	435	456	0.97
6	10	0.00027	0.018	16.0	0.1	2	23	464	486	464	486	0.95
7	10	4.4e-05	0.0029	18.5	0.9	2	23	497	518	497	518	0.97
8	10	2e-05	0.0013	19.5	1.7	1	23	524	546	524	546	0.99
9	10	1.5e-06	0.0001	23.0	0.7	1	23	552	574	552	574	0.94
10	10	2.5e-06	0.00016	22.4	0.5	1	23	580	603	580	603	0.94

Sequence Information

Coding Sequence: ATGGTTCCCTTCATGGCTTGCCGTATATGTCTcaacacagatgttaagctttaCGATATGAGTAAAAATCGTTTAAAATACGCATACGAAATTTTTTGTGGActTCCAGAACCCCAGTTAGACCTGATGCCGCaacatttatgtatatattgtggaACAATGCTGAACAAGTTTGTGTTGTTTAAGGAGAAATGCGAGCAGGCTACACACCTTATGGAGATTCTGTTGGTAGAAAACATGCAGcTAACACCAGAGAATATACAAGGAATCAATAAACCTGAAAATATGTTTCCTTACACAATGCAAGTAATACATAACTTAGACTCAATTACAGAAGTAGCAGAACCAACTGCAGTCAAAGAAGAAAAAGTGCTTTACAATGAATCTCTAAATGAAACTGACGAATTCAATAACTTTGAAAGTAAAGACTTAATTGATATCGGCCATAATATAGCCTTTAAAAGTGATATTGATGATAAGAGTGATGATGAACCATTGTCAAAAAAAGTTAAAGATAGGAAAAGGAAAAAGAAGAGTAAAAAGAAGGACACAAACCTTTCATTCAACCTCAAATCTGAAATAGAATCTTCACAGTATATAGATAACACTGAGCAACAGTATTCTGAAGGAAGACTGATCACTAACAATATTGAGTTGGAGTCAGAAAATTGGGAAAGCAATGATTTTGATCTGATATTGTTGACGAAAGAGCAGCAATTAGAAGAAGTGTTGGCGAGAAAGAACTCTCCCAACTACAAGAATTCTGTGTACAAGTGTGAATATTGTTACAAAGGGTTTATGACGGAGGTCACGTTTAAAAACCACATGATACGGCATGATCCATCTGCTGGTGCGCTATCGTGCAGCGTGTGTAAAGCGCGGAGCTGTAACTTGCGATCGCTGCGCGCGCACAGTGTCGCGCATGCGCGCCGGTACGCATGCCGGCTATGCGCACACACCGCCACTTCGCATCACAAAGCTAAGGAACATCTCAAGTGGCACAAAGGTTATCTATTTGAGTGCAAACTATGTGACGCTACATTCAAGAAAAGCACTACACATCTGACGCATATGAGAGTTCGACACGCGTCTCATACTGCCGCGTGTGACGCATGTGGAGACCGGTTCCTAGGACAAAATGGCCTTAACATTCACAAAAAGAAAGCACATCGACTACAAGGTATAGAATCGAGTATTCAATACCACAACTGCGATGTCTGTGGCGCCAGATTCAGGAACGAAGATGCTTTAAAAAGGCACAAAGACCTAGCTGCCGATGATAACTGTCATACTAAAATAAGGCCCTGTGAGCAATGCGGTGACAGTTTTCCAACCGAAGAATCATTGAAGGACCATTTGGAGATGCATCAAAGAGTTGACGCGTTAAGGACTTGTAGCGAATGCGGGCGTACGTTTCCTAACGAGCGCGCGTTGGCGCTGCACCGAGCGCGCGCGCATGCGACCGGACGCACGCGGACGCAACACGCCGTCTGCGAGATCTGCGGATTCACTTGTATCTCACGAGCGTCGTTAATCAGTCATCAGCGGACGCACACGGGAGAAAGACCATTCGAGTGCTCCGTGTGTCCCAAAAGATTCAGCGTGCACCAACGATTACAGATTCACATCCGCACACACACAGGCGAGCGTCCGTTCCAATGTCCGATTTGTCCCAAGGCGTTCAAGCACAAAGCGGCGCTCAATAGACACGATCGGGTCCACACAGGGGCACGCCCATATCGCTGTCCAACATGCGGTAAGTCGTTCTCTCAGTCAAACTCCATGAAACAACACGCCGCTTCCGTTCATCTGAAGGCACCTCTCTACGCGCGGAAACCCAAACACGACATCGCGGCAATAAACAGCTTGAATGACGCGCTTGTAGCCTAG
Protein Sequence: MVPFMACRICLNTDVKLYDMSKNRLKYAYEIFCGLPEPQLDLMPQHLCIYCGTMLNKFVLFKEKCEQATHLMEILLVENMQLTPENIQGINKPENMFPYTMQVIHNLDSITEVAEPTAVKEEKVLYNESLNETDEFNNFESKDLIDIGHNIAFKSDIDDKSDDEPLSKKVKDRKRKKKSKKKDTNLSFNLKSEIESSQYIDNTEQQYSEGRLITNNIELESENWESNDFDLILLTKEQQLEEVLARKNSPNYKNSVYKCEYCYKGFMTEVTFKNHMIRHDPSAGALSCSVCKARSCNLRSLRAHSVAHARRYACRLCAHTATSHHKAKEHLKWHKGYLFECKLCDATFKKSTTHLTHMRVRHASHTAACDACGDRFLGQNGLNIHKKKAHRLQGIESSIQYHNCDVCGARFRNEDALKRHKDLAADDNCHTKIRPCEQCGDSFPTEESLKDHLEMHQRVDALRTCSECGRTFPNERALALHRARAHATGRTRTQHAVCEICGFTCISRASLISHQRTHTGERPFECSVCPKRFSVHQRLQIHIRTHTGERPFQCPICPKAFKHKAALNRHDRVHTGARPYRCPTCGKSFSQSNSMKQHAASVHLKAPLYARKPKHDIAAINSLNDALVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -