Basic Information

Insect: Plemyria rubiginata
Gene Symbol: SALL3
Assembly: GCA_963576535.1
Location: OY754919.1:11969281-11971014[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2 1.3e+02 3.8 0.9 3 23 176 196 174 196 0.91

2 12 7.8e-07 5e-05 24.0 1.9 1 23 202 224 202 224 0.98

3 12 0.042 2.8 9.1 0.8 3 23 253 273 252 273 0.98

4 12 0.00069 0.045 14.7 2.0 3 23 281 302 279 302 0.95

5 12 5.8e-05 0.0038 18.1 3.1 1 23 310 332 310 332 0.98

6 12 7.4e-06 0.00048 20.9 3.3 1 23 338 360 338 360 0.96

7 12 1.4e-05 0.00094 20.0 1.1 1 23 366 388 366 388 0.98

8 12 8.6e-06 0.00056 20.7 0.8 1 23 394 416 394 416 0.97

9 12 1.3e-06 8.6e-05 23.3 0.4 1 23 422 445 422 445 0.97

10 12 0.16 10 7.3 2.6 1 21 475 495 475 498 0.90

11 12 0.19 12 7.1 0.3 1 23 504 529 504 529 0.95

12 12 0.0046 0.3 12.1 3.3 1 23 535 558 535 558 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2	1.3e+02	3.8	0.9	3	23	176	196	174	196	0.91
2	12	7.8e-07	5e-05	24.0	1.9	1	23	202	224	202	224	0.98
3	12	0.042	2.8	9.1	0.8	3	23	253	273	252	273	0.98
4	12	0.00069	0.045	14.7	2.0	3	23	281	302	279	302	0.95
5	12	5.8e-05	0.0038	18.1	3.1	1	23	310	332	310	332	0.98
6	12	7.4e-06	0.00048	20.9	3.3	1	23	338	360	338	360	0.96
7	12	1.4e-05	0.00094	20.0	1.1	1	23	366	388	366	388	0.98
8	12	8.6e-06	0.00056	20.7	0.8	1	23	394	416	394	416	0.97
9	12	1.3e-06	8.6e-05	23.3	0.4	1	23	422	445	422	445	0.97
10	12	0.16	10	7.3	2.6	1	21	475	495	475	498	0.90
11	12	0.19	12	7.1	0.3	1	23	504	529	504	529	0.95
12	12	0.0046	0.3	12.1	3.3	1	23	535	558	535	558	0.97

Sequence Information

Coding Sequence: atggAGTCTAAAATATGTCGTGTGTGTCTCGACAGAACAGCCACTATATCTCTGTTCGATCAACATGACAATATCCAGTACCGCGAGAAGATATTGAAGTGTGCTTCTGTTACCATCGAAGAGGGTGATGGCTTTCCTGATTCAATTTGTGAAACCTGCGCCTCTGAGCTTGCGATCAGCTATGAGTTTGCGCAGAAGTGCGAGGCGTCTGATCGAGCCTTGCGCTGCCTCGACCTACTCCAAACCCCTGATCTCTCGGAAAATTCTAAAATGAAACTCGAGCCACTCCTACAAGAAACGTTTCCAGAAAATGGATGTGAAGCTATtgaaaattatgattatgatgatcAGATTATATCAGACTCAAAGCTTGCCTTGGAACATGTTTACATAGAACCTACCATTGAAACTGAAGAACTAATTAGAGCTTTGGACAATAAAAacccaaacaaaaacaaatacaataaacatattgCCAATTATTTGCGTCAGGCCATGCCGAGGGTGTACTCAGGTCCTATTCAATGTATAACATGTGGCAGAATACTGAAGTGCCAATCAGCTTATGAGTTACACTTGAGATCACACACCAAAGAAAAACCCTTTAGCTGTGATATTTGCAAGAAAAGCTATGTGAATAAAACCAACTTGAAAAGTCACATTAATAGACACTTTGGAATTATTCATGACCATAAGCCACCGCAAGACTGGGATGGGAGAAAAAAAATAACCAGATTGAAATCTGCACCTATTCTATGTGTTATTTGTGGATTAAGTTTGAAATGTCGCTCTGCTATGGAAGCTCACATGAGAAAACACACAGGTGATAAACCATTTGGCTGTTCCGAATGCTCCAAGTGCTATTCTTTGAAGGGCTCTCTGATGAAGCATATTAAAGCAACCCATGAAAAAGAGAAAGCTGCAATGTTTGTCTGTGAACACTGCGGGAAGAGGTTTCCTTCAAAGTGCACCATCATTATTCACTTACGCAGCCACACAGGAGAGAAGCCACATGCCTGTCCATtctgtgaaaaaaaatttactcaGTTATCCTCTTTGATTCGTCACAAACGCCGCCACACTGGTGAAAAGCCATTCTCATGTCAAAAATGTGCAAAGGCATTCAGTGATAATAATCTCTTAAAAAAGCACCAATCCGTTCACAGCACCGTTAAAAACTTTATCTGCAACTTCTGTCAGaaaggatttaaaactaaacaaGCCCTGAATGCTCACATTGAGCGACACAATAACCCAGGAAAGTATATCTGCAATGTCTGCGGAACAACATTCACAATCAAAGGTAACCTTAACATGCACATGAAGCGAGTCCATTCCGAGAAGTCAGGCACGTGCACCGAATGCCACAAGTTGGTTCCGAACCTGTCCGCTCACATGAGGACACATAGTGGCGAGAAGTTGTTCATTTGTAAGCTTTGCAACCAACGGTACATGACTATGAGAAGTTTGTCCCACCACATAGGCTTCAAGCACAGGGATGCTGCTAAGTTTAAGTGTTCTACTGGGCAGTGCACAAAGGCCTTTCCCCTGATATCTATGTTGGAGTTCCATATGCTCAAAGCCCACCTGGACACCACGCCCTACATCTGCCAACACTGCTCCCGGGGCTTCTTGCGACCCTGCGACCTCTCCCGCCATCTCCGAGTCAACCATATGGATATTACTAAAGTTAAATCAAAGTTCATTAAAACAGTAAAGACCTCTCCTACTTGA
Protein Sequence: MESKICRVCLDRTATISLFDQHDNIQYREKILKCASVTIEEGDGFPDSICETCASELAISYEFAQKCEASDRALRCLDLLQTPDLSENSKMKLEPLLQETFPENGCEAIENYDYDDQIISDSKLALEHVYIEPTIETEELIRALDNKNPNKNKYNKHIANYLRQAMPRVYSGPIQCITCGRILKCQSAYELHLRSHTKEKPFSCDICKKSYVNKTNLKSHINRHFGIIHDHKPPQDWDGRKKITRLKSAPILCVICGLSLKCRSAMEAHMRKHTGDKPFGCSECSKCYSLKGSLMKHIKATHEKEKAAMFVCEHCGKRFPSKCTIIIHLRSHTGEKPHACPFCEKKFTQLSSLIRHKRRHTGEKPFSCQKCAKAFSDNNLLKKHQSVHSTVKNFICNFCQKGFKTKQALNAHIERHNNPGKYICNVCGTTFTIKGNLNMHMKRVHSEKSGTCTECHKLVPNLSAHMRTHSGEKLFICKLCNQRYMTMRSLSHHIGFKHRDAAKFKCSTGQCTKAFPLISMLEFHMLKAHLDTTPYICQHCSRGFLRPCDLSRHLRVNHMDITKVKSKFIKTVKTSPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -