Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754920.1:7255699-7270514[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00048 0.031 15.2 0.2 2 23 146 167 145 167 0.93

2 11 0.00069 0.045 14.7 2.4 1 23 173 195 173 195 0.96

3 11 9.6e-06 0.00062 20.6 0.2 1 23 305 327 305 327 0.98

4 11 1.1 71 4.6 0.1 3 23 335 356 333 356 0.94

5 11 0.00025 0.016 16.1 0.0 3 23 409 430 407 430 0.90

6 11 0.058 3.8 8.6 0.6 1 23 445 467 445 468 0.93

7 11 3e-06 0.00019 22.1 0.2 1 23 504 526 504 526 0.98

8 11 0.00074 0.048 14.6 0.2 1 23 532 554 532 554 0.97

9 11 0.00042 0.027 15.4 0.3 1 23 560 582 560 583 0.95

10 11 0.035 2.3 9.3 0.5 1 23 598 620 598 620 0.97

11 11 0.0035 0.23 12.5 0.1 1 20 753 772 753 775 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00048	0.031	15.2	0.2	2	23	146	167	145	167	0.93
2	11	0.00069	0.045	14.7	2.4	1	23	173	195	173	195	0.96
3	11	9.6e-06	0.00062	20.6	0.2	1	23	305	327	305	327	0.98
4	11	1.1	71	4.6	0.1	3	23	335	356	333	356	0.94
5	11	0.00025	0.016	16.1	0.0	3	23	409	430	407	430	0.90
6	11	0.058	3.8	8.6	0.6	1	23	445	467	445	468	0.93
7	11	3e-06	0.00019	22.1	0.2	1	23	504	526	504	526	0.98
8	11	0.00074	0.048	14.6	0.2	1	23	532	554	532	554	0.97
9	11	0.00042	0.027	15.4	0.3	1	23	560	582	560	583	0.95
10	11	0.035	2.3	9.3	0.5	1	23	598	620	598	620	0.97
11	11	0.0035	0.23	12.5	0.1	1	20	753	772	753	775	0.93

Sequence Information

Coding Sequence: ATGGATGGAGACAGAGAATTCAACCTCCATTGGGGAGGAGGGGAGGTAGTaataaagCATGACCCTGACCATCAACCATTATGTAGTATTGAAACTGTGCATAGTGAATATCAAAACATGACTCCAGAAGAAATAATGGCAAATACAGATCAAATGGCTGCTCAGAATCTAATGTTCCTGGCTCAAGATGTTATTGGTTACCAAGACACTGCCGATCTGGCCGATGATCCGAGTGTTGAGTGTGTAACTGAGGAAGTTATTGCAGATGATTGGGTTGTCGATGAGGGTCAGGAGCGGATGGATATGCCTATTGATCATTATGCAAACACCATAGAACTGAAGGTAAAAGAAGAAAATGATGTTGATGTCCCACTGCCAATAGATCAAGAAATAAATCTGCATTCTCAAGATGAGTACACAGCGATGCGTCCATGGCCATGCGATTTCTGCTCGCGTCGCTTTCGCAAGAAGGCGGCTCTGATGAACCATATGGTCGCGCATCAGAACGATAGACCGCACGCTTGCAACTTGTGCGGCGTACGTTACGTGCGAAAGTGCGATCTTATGAACCATCTCAAGGTGCATGCCTTTGTGCCTGATAATGCCGACTCGGTGGACTTTGAAGAACTGCTAGAAAACAACCAAATTGTGAAACCAAAGAAGAAGCGTGGACGACGGAAAAAGATAGCTGAGCAAGAAGAAGACGAATGGGAGAACATGACATCAGCTCGAACTCAGCAGTGGTCCCGCCGAGGTCGGTCCCCTGCCAAGCTGCCTCAGTCGCCGCCACCGATGTCGCCGCCGGCACCGTCATATCCGCCGTTACCGCCGTCACCGCCGTCACCGCAGTCTCCGCCGTCACCGCAGTCTCCGCCGTCGCCGTCACCGCCGCCGGCTGACCCGTCCCGCCCGTTCGTCTGTAAGACTTGTGGCATCGCCTTTGCGAGACAAAAGGCGTTACAGTCCCATTCGAGGGTCCACGGCGGCGACTCCCCTATGGACTGCGAGGAGTGTGGGGAACTGTGCTGGACGCGGGAAGCGCTCGCCGCGCATGTAAACAGTCGGCACCCGCATCTGCCGCCGCGCTCCTCGCACCAAGCTAACTACAATGAATCCGACTCAGGCGACGACATGGATTACCGGCTGTCTCCGGAGTCCGTGCCAAGCGGCGGAGTGTCGGAGCGGCAGCCGGTGTACGAGTCGATGCGAGGGCCCGAACTGTTCTGTCCGGACTGCGGCGTCGCCTTCCAACGGGCAGACTTGCTGAGGCGACACGTGGCCGCGGCGCATACCTACAAGCGGGCGGCGGCGGGTGGCGGCGCGTGGGGCGAGCACACGTGCGACGCGTGCGGCGAGGCGTGCAGCGACGCGCTGCAGCTGCTCGCGCACGCTGAGCTGCACCACGACCAGTcgcgcgcgcccgccgccggcgccggacCCACCGCGCACAGGTTAAAAAAATCTCCCAAGGGACGAAATAATTCTTCGATATCCAGTAATTCACGGCAATTCCCTTGTAAAGAATGTGGCAAGGTGTTCGGTTCCCGCAGTTCGCAGCAGATACACATTCGCATCCACACGGGAGAGAGGCCTTATGCGTGCCGGTTCTGTTGGAAAGCGTTCGCAGATGGTGGGACGCTGAGGAAACACGAGAGGATACACACGGGTGAGAAGCCGTACGCATGCGCAGTCTGTCCGCGTGCGTTCAACCAGCGCGTAGTTTTGAGAGAACATGTAAGATCGCACCATTCTGCGCCGGACCGCAGACAACAGGCTAGTGGTGGGTCGGCGTATTCTTGCGTGGTTTGTTCGCGTTCGCTACACACCAGTGTGGAGTTAGTACAACACCTCATTCAACACTGCGACGCTAATACAGCGTTGAAAAGACAACCACAGAACGGGCCGCGCAAGTACAAGCGCCGGCGGAAGATGAAGAGCGAGGCGATATCTCCGCGGCGCGAGTGGAGCTCCCCCTCCCCGGCGCGTGACCCCTCCCCCCGCGCGGCGACCCccccgccgccgtcgccgccgccgccgcgccgtcgctCCCGTCGCGAGCCGCCCGCCCGCCCACGCATGATACACACCTCGCACGAAACCAAGGCGCACGCTAAGGTTAAGTCGTTGCGGCAACGGCGGCCGCCGCGCCATCCGGCCGACGACCTTCGAGCCATCGGGCCGCACTCTCCGTCTCCGAAACGGGAGCTGAGCTCTCCCGTCCTATCGTCCGAAGAAACCCCCGATGCAGGAGCTCCGTACAAATGCGAAATGTGCTCGGAAGAGTTCCCGCGTCGAGACGCGTTGCTACTTCACGTGCCTGTGCATATATGA
Protein Sequence: MDGDREFNLHWGGGEVVIKHDPDHQPLCSIETVHSEYQNMTPEEIMANTDQMAAQNLMFLAQDVIGYQDTADLADDPSVECVTEEVIADDWVVDEGQERMDMPIDHYANTIELKVKEENDVDVPLPIDQEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNADSVDFEELLENNQIVKPKKKRGRRKKIAEQEEDEWENMTSARTQQWSRRGRSPAKLPQSPPPMSPPAPSYPPLPPSPPSPQSPPSPQSPPSPSPPPADPSRPFVCKTCGIAFARQKALQSHSRVHGGDSPMDCEECGELCWTREALAAHVNSRHPHLPPRSSHQANYNESDSGDDMDYRLSPESVPSGGVSERQPVYESMRGPELFCPDCGVAFQRADLLRRHVAAAHTYKRAAAGGGAWGEHTCDACGEACSDALQLLAHAELHHDQSRAPAAGAGPTAHRLKKSPKGRNNSSISSNSRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRQQASGGSAYSCVVCSRSLHTSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKMKSEAISPRREWSSPSPARDPSPRAATPPPPSPPPPRRRSRREPPARPRMIHTSHETKAHAKVKSLRQRRPPRHPADDLRAIGPHSPSPKRELSSPVLSSEETPDAGAPYKCEMCSEEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00377360;
90% Identity: -
80% Identity: -