Prub021066.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754931.1:744329-748243[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 8.9 7.5 1.0 1 23 251 274 251 274 0.97 2 17 0.01 0.66 11.0 1.7 1 23 279 302 279 302 0.96 3 17 4.2e-05 0.0027 18.5 0.3 1 23 332 355 332 355 0.98 4 17 0.011 0.71 10.9 1.2 3 23 418 439 416 439 0.92 5 17 0.00027 0.018 16.0 1.5 1 23 445 468 445 468 0.94 6 17 0.015 0.95 10.5 0.6 2 20 472 490 471 492 0.94 7 17 0.0043 0.28 12.2 0.1 1 23 500 523 500 523 0.95 8 17 0.0036 0.23 12.5 0.5 1 23 528 551 528 551 0.96 9 17 0.02 1.3 10.1 0.3 2 23 564 585 563 585 0.95 10 17 0.0026 0.17 12.9 1.1 1 23 591 613 591 613 0.97 11 17 2.9 1.9e+02 3.3 0.1 2 16 619 632 618 637 0.73 12 17 0.00032 0.021 15.8 1.0 3 23 651 671 650 671 0.97 13 17 1.1 71 4.6 0.9 3 23 677 697 676 697 0.93 14 17 8.5e-05 0.0055 17.6 0.8 2 23 714 736 713 736 0.96 15 17 8.5e-06 0.00055 20.7 3.9 1 23 742 764 742 764 0.99 16 17 0.00012 0.0081 17.0 5.3 2 23 771 792 770 792 0.96 17 17 0.0057 0.37 11.8 1.8 1 23 798 821 798 821 0.96
Sequence Information
- Coding Sequence
- ATGAACAATCATACAGAGACTAATCCTAGAACCCAAGAGGTAATAAACGTAGAATGGCTAAGATCACGAATGAAATCCATCTGGACCTCGCCGAGATACTGTGCGCTGTGCCTCGCCTCTGAATTGGAGTATTTGGCTTTGAATATTGAGTTCACGAGCAATGAGGAAACATCTACAAAGCCACTTAGAGAAGTGGTCAATTACGTGTTTAATTTTGATATCGATGACTGCATCCCAAGTGACTATATATGTGTGGAATGTGCAGAAAAGACTATTCAAATGTACATTTTCATTACCAACACTAAGAAAACATTTGAAATACTGAATAACTGCCTGAACGATATGAATTCAAAAGTCAACGACATAAACAACACACTGAGTGAAGACATCCAATATGATAATTCTAATGTAGTGATAGTAGTTGAGTATGATAATGAAACTCATGTTAAAATAAGTGAGTTGGCTTTATCCAATAATGCAATTTTAACTGACAAACCAATCCATGTTGAAAACACTACGTTGAGAAAGCCTTTTAAACTAACTACTTCAAATCTAGATGACAAAGAAACCAATAGGCCAGTTATCATCCCAACACCAAGAGTGGTCAAGCATCCAAGGAAGAAAGAGGTTGCAAAAAATGTTAACTTTGAAGAAAAGGTTACAACCCCAAATGTAACACTCAAAGAGGGTAAATTGGTAATTGAACCTTTAGTAACAAACAGTATACCATCAACTCCAAGATTCAACACCTACACCTGTAATTCATGCCCGGATATCTTCACTACATATAGATCTATGAAGGAGCATGAAAAGGTAAAGCATAACTCGGTTATTTTCAAATGTAGATTTTGCACTAAAATCTACAATACTCAACAGTATTTAGATGTGCACTACTTATCAGCACACAGAAAATCTAGATGCCGATTCTGTATAGATATATTTGACTCCGAATCCCTGAACAGTCACTTAAAAGAGATGCATCATAATTTTGTCTATGTTTGCTCAGAATGCGATTTGGTTTACTACTCCAATGCAAAGCTTGAAACTCATATGAAATCCAGTCATTTTAAGCATAGTCCTTCTAATGTGAGACAACAGTGTGCAATGTGCCTGAAGAATTTGAAAGATATTGAAATTCCTACTCACAAATGTAAATTCACATGCCTGGAATGCCCTAAAGTACCTTGTGTCCACTACAGCTATCTGATGTCTTATAGAGAGCAGGTCCTTAACAATTCTCCGATGATAAGCTGTATAGACTGTGACTATACAACCAAAAGGAAAGAACATCTGCTTTCACATGTAAACAGGGAGCATTTGGACCATCACCCATTCACATGCAATGATTGTGGAACACAGTTTTACACAAAATTGTCACTTAAAACACATGTAATTCAGTTCCACCAGGATTTAAAATGTCAGTACTGCGATTCTGACTTTAAGACTACAAAATTGTTGCGAACACACCGACTAGCATGCAAAGCAAGTACTCGTAGATATATCTGTGAGAAATGTGTGGCATCTTTTGATACTTTACAAGAGTTGGAAAAGCATGTTATAGTGAACCATAGTGAGTTTGTATACCCTTGCTTACTGTGCACTAAAGAATTCCCCAGCACAGACTTATTAAAGGAGCACCATGCAAGGGTACATAGCGGAATACAATACAAAAAGCGAAGGAAAATAATTGAATGCACACTCTGTGATATCACTTTCAAAAACATCAAAGAAATGCTTGAGCATGAGAAACAACATGCTTCCGATGAATTTTTTCCTTGTAAAGTGTGTCCTAAGAGCTATAAAAGCCTTAAATTAGTCTACATCCACAAACAGAAACACTACTCCCAGAGAATCAAATGTCCTGGCTGCAAAAAGGCTGTCGCTGTGTCTTACCTGAAGCAACATAAAGCTCTATGTAAGTCTCTGAGGACAACCAAGGCTAAGAAAATCTGTGATGTTTGCGGCGAAGCCTTCCATTCACAATCGAGACTTAAAACACATCAGCAACTTCACTTCAAACCAGAGCCATGTGTGCACTGTGATAAAATGATCAAACCTTCTTTTATGAAGAAACATATAGAGATAAAACATGGATCATATGCAGATATAGATGAGCTGTCAATGAAAGGAAGCCAGCTTAAGTGCAATGATTGTGAGTATGTGACACGGAAGAAAACAGATTTAGAGAACCACATGAATAAAATACACTTAAAGATCAAGCCATATAGCTGTGATGTGTGTAATCGCACGTTTTGTGGCAAGTCCAGACTAAAGGAGCATATGCGAACACATTCAACAGCAAACTCCTGCATTTGCTCCTACTGTGGAAAGAAATTTGCAAATAAAGTATGCTTAAAAATGCATGTCCGTAGACATACAGGGGAAAGCCCATATGAATGCAACATTTGCTCCGAGAGATTCCGCTCTTCCAGTATTATGAAGACACATCGGTTAAAAAAACACCAAGATAAAACCATAGCTTGTCCGTTATGTGATGCAATGTATCACATAGTGGCTGAGATGAGGTTCCATGTTAAGAAAACCCATTGGAAAAGTTCTGAACCATTTGATTATAAAAAGATTGTTCCGGAAAGGTATCACCATCTATTTCAAGATAGGAGACTGCAGAAATTGGGAGAAGAAAGTATTGTATTGACACAGGGCATGGTTTGTGATGAAGAAGAAATAGTGAattgttttgtattataa
- Protein Sequence
- MNNHTETNPRTQEVINVEWLRSRMKSIWTSPRYCALCLASELEYLALNIEFTSNEETSTKPLREVVNYVFNFDIDDCIPSDYICVECAEKTIQMYIFITNTKKTFEILNNCLNDMNSKVNDINNTLSEDIQYDNSNVVIVVEYDNETHVKISELALSNNAILTDKPIHVENTTLRKPFKLTTSNLDDKETNRPVIIPTPRVVKHPRKKEVAKNVNFEEKVTTPNVTLKEGKLVIEPLVTNSIPSTPRFNTYTCNSCPDIFTTYRSMKEHEKVKHNSVIFKCRFCTKIYNTQQYLDVHYLSAHRKSRCRFCIDIFDSESLNSHLKEMHHNFVYVCSECDLVYYSNAKLETHMKSSHFKHSPSNVRQQCAMCLKNLKDIEIPTHKCKFTCLECPKVPCVHYSYLMSYREQVLNNSPMISCIDCDYTTKRKEHLLSHVNREHLDHHPFTCNDCGTQFYTKLSLKTHVIQFHQDLKCQYCDSDFKTTKLLRTHRLACKASTRRYICEKCVASFDTLQELEKHVIVNHSEFVYPCLLCTKEFPSTDLLKEHHARVHSGIQYKKRRKIIECTLCDITFKNIKEMLEHEKQHASDEFFPCKVCPKSYKSLKLVYIHKQKHYSQRIKCPGCKKAVAVSYLKQHKALCKSLRTTKAKKICDVCGEAFHSQSRLKTHQQLHFKPEPCVHCDKMIKPSFMKKHIEIKHGSYADIDELSMKGSQLKCNDCEYVTRKKTDLENHMNKIHLKIKPYSCDVCNRTFCGKSRLKEHMRTHSTANSCICSYCGKKFANKVCLKMHVRRHTGESPYECNICSERFRSSSIMKTHRLKKHQDKTIACPLCDAMYHIVAEMRFHVKKTHWKSSEPFDYKKIVPERYHHLFQDRRLQKLGEESIVLTQGMVCDEEEIVNCFVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -