Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754922.1:10317971-10337223[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-06 0.00016 22.4 1.0 1 23 5 27 5 27 0.98

2 15 0.02 1.3 10.1 1.3 1 23 33 56 33 56 0.95

3 15 3.4e-05 0.0022 18.8 5.1 1 23 63 85 63 85 0.97

4 15 6.2e-06 0.0004 21.1 1.7 1 23 91 113 91 113 0.97

5 15 0.00027 0.017 16.0 4.9 1 23 119 141 119 141 0.99

6 15 0.00023 0.015 16.2 0.1 1 23 148 171 148 171 0.94

7 15 0.0034 0.22 12.5 1.1 1 20 179 198 179 199 0.96

8 15 0.0013 0.086 13.8 1.6 2 23 209 230 208 230 0.97

9 15 0.0011 0.072 14.1 1.4 1 23 236 260 236 260 0.92

10 15 4.6e-05 0.003 18.4 3.2 1 23 266 289 266 289 0.96

11 15 0.00011 0.0074 17.2 0.8 2 23 322 344 321 344 0.97

12 15 0.15 9.9 7.3 0.2 1 23 352 375 352 375 0.95

13 15 0.79 51 5.1 2.2 1 19 836 854 836 858 0.90

14 15 4.6 3e+02 2.7 0.3 2 10 869 877 868 889 0.77

15 15 0.024 1.6 9.8 4.2 1 23 1010 1032 1010 1032 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-06	0.00016	22.4	1.0	1	23	5	27	5	27	0.98
2	15	0.02	1.3	10.1	1.3	1	23	33	56	33	56	0.95
3	15	3.4e-05	0.0022	18.8	5.1	1	23	63	85	63	85	0.97
4	15	6.2e-06	0.0004	21.1	1.7	1	23	91	113	91	113	0.97
5	15	0.00027	0.017	16.0	4.9	1	23	119	141	119	141	0.99
6	15	0.00023	0.015	16.2	0.1	1	23	148	171	148	171	0.94
7	15	0.0034	0.22	12.5	1.1	1	20	179	198	179	199	0.96
8	15	0.0013	0.086	13.8	1.6	2	23	209	230	208	230	0.97
9	15	0.0011	0.072	14.1	1.4	1	23	236	260	236	260	0.92
10	15	4.6e-05	0.003	18.4	3.2	1	23	266	289	266	289	0.96
11	15	0.00011	0.0074	17.2	0.8	2	23	322	344	321	344	0.97
12	15	0.15	9.9	7.3	0.2	1	23	352	375	352	375	0.95
13	15	0.79	51	5.1	2.2	1	19	836	854	836	858	0.90
14	15	4.6	3e+02	2.7	0.3	2	10	869	877	868	889	0.77
15	15	0.024	1.6	9.8	4.2	1	23	1010	1032	1010	1032	0.98

Sequence Information

Coding Sequence: ATGGCTAAACGGTTCAAATGTGACATCTGCAACAAAAAATTCATAGACAAATATAATTTAGTTAGTCATGAGAAGGTGCACTCAAGTGCCACTCCTTTTGCCTGCTCTCAATGTCCGTACCAAGGCAAGACTAAGAAGTACCTGGCACGTCACACCAAACAAATGCACAATGAGAAAACGGGGAAGCACAAGTGTGATGTCTGCGGCAAGTTCTTTCATCATCAAAGCAATCTGAGGGTCCATGCTATGGTCCACACGGGTGAAAAACCACACAGCTGCAATGTATGTGGCAAAACTTTCAGAGTCACCTATTCTTTGAACTCTCACATGCTGATACATACAAaCGAGAAACCTTTCCAATGTTCATTCTGTGAGTACGCATGCCGGGACAGTTCTACGCTGCGCAAACACCAGAACAAACACATGGGGATGGAGAAGATGTACGAATGCAACATCTGTAAAAAAGTGTACAAGGTTCTCGCAGCCTTGAAGGTGCATATAGCAGAGCGGCATCTGGATGTAGAAGTCAGGAAGTATCCCTGCGACCAATGCGACAGAATATTCAAGTCTAAAAAGCACAGGAAACTGCATATTGATTGCATTCACAAACGTGCATTGGTATGCACGTGTCCTATTTGCGGGCGTCGACTGATGAACAAAAACAACTTGCCCACACACCTGCGCACGCATCTGGACGAGCGTCCCTTCAGCTGCACGCATCCAGGCTGCAAGATAGCTTTCAAAGATAAGAGCTCACTGAAGAAACACAGCGTGATCCACAAGCCGGACTTGCATTTTGCGTGCTCGCACTGCGGCCGCAAGTTCGTGCGGAGAGCGCACGTGCAGCGGCACGAGAGAGTGATGCACGCGGAGAGAAGTCGCGCCGTCGAGTGCGACTACTGCGGCTCCAGTCACGTGCAGCGGCACGACAGAGTGATGCACGCGAAGAGAAGTCGCGCCGTCGAGTGCGACTACTGCGGCTCCAGattctaCTCAAAGAACTACCTGCTGAAACACATACAGACGAAGCATGTATATAAGCATAAATTCAAATATATATGTGATATATGCGGCCTCGTTACCCACAACAAGCCGAGTATAGTCATGCACCTTAAGTACGGACATTCGAATGATAATGATATGCAATGTAAAATATGCGACAATGATATAGTTTACAAGAAGCATCTCTATCTGAAGTCGCATTATTGGAAGACTCACAACATCCGATACAAGATTACCAGGAAAGCCACCAACTTGAAGGCTgctaaAAAAGAAAAGGTAGACCAACCGACGTTTGAAATAAAAGTCGAGCCGATCGAAGCTGACTCCTACGAAGAGATACAACTGCTGGAAGTGACCAAGCTAGAACAAGAAGATGAGATGGACGACTGTAAAGAGTACTCTCGGCGTGTGTTGGCCGAGGATATGGCGCATGCGCTAGCAGCGACGAGCGCGCCGGAGAAAGAATTCAACGCTTGCTTCGTCCGACATGTCGTCGGAACGTCCCGCGTCGATCCTGATCACGGTACCAATAATTGTAACGCTCTCAAGGTTGATGGCATTGACGAAGAACTTAACCAGGACGTGAAACGTCGCATCAAGCAGATCCTGGTCACAACTGAGAAGATGGAGAAAGCAAAGGTCTTGCGGGAGAGACGCAAGCAAGCGCAGAGAGAGAAGAAGGAACGAGAGAAGAAGGAGgcgcagagagagagagaggaaAGGCATGAGCTGGCGAGGGTAAGAGAGATGTACAACGAGAGGATGAAGGCAGCGCTCACCAAGCAGAACGAGAGAAAAGaaaaagtcaaaataacaTACTTCAAGATCCCTGAAGATTCcaataacaaaaacaataaaactaatGAAGAAAATCCCAAAATCTCTGCAGATGATGAACCTGAAACTTCCACGGTCGACAAAACTGTGTCAAATAATAATACGCCGATTGACGATAGTAATAACACTGAAAATACtgcaataaatcaaaatattgaTGTAACTAATGATTTGAGTACAGCGTACGATAATACCGTACCGTCTCATGACGAAACGAATAGTAGTACAGAAAATGATAATACTACAGTACTCTCTCATGACCAAAATAATGATAGTACTGCAAATGCTGACACATCACTAGCTAATGATCGAAATAATGATGTAGAAAACGATGATACAGAACTACCTAATAATGAAACAAATGATAGTACAGCCAATGATGATACAATATTCTCTACTGACAAAAATAATGGTTCTGCAATCAATCATGAAAACCCTTCAGAGTATTGCGAGAGAGATAGTATGGAACTTAGTGCAACTATTCAAACGAAGGAAAATGCCACGTCACAAGAATACCATACGAGTAATGAGATATCTGAAACTAGTAATAATTTAGATCAACCACTCTTAGAACGGAGAGTTAGAAGAAGAGCTTCAAGGAAATTTCTTAATTATGACGTGTTATCGAATGACAGCGGAAAACCGAAGAAAATGGAGTTTAAAACGTATCAATGCTATGTTTGCTTCAAGTTATACGAAACAAAGGAAGCGCTTATGTTGCACTGCCAAGAACACTTTGACATGTGTCACTCTGTGACGCTCAGCAAGTGCCCCATATGCGGGCATGTCAGCCATCGCAGCATCGCTCGCCACTTGAAGGCGGAACACGACGTCTGCcttaaaatagcaataaacaaaatgaaacgCACAGAAGATACCTGCACATACACCTGTGAAGCAAACGGTACGAAAGTGGACGTGATCCCTAGCGTACGCTACCTAAACAAGGTGGCTAGCGAAACTATTGATAAGAAACGACGAGAGATGACCCTCCAAACTATAGCCAAACCCAAGCTGGTCAAGATACGAAACGAGTGGATACTCCAAAAAGAAACTGTACCTATAGCGTACGATGAGATTCCAGAGCTCAGCGATCGAGATATGAATAAGCTGAAAGTTTGCGATAACGATGTGGATAGGCTGGGCCAACTCAGCCGTATAGCGAGGATGAAATCTCTCAAAATGATGTTTCCTTGCTTCAAATGTGATAGAATATGCCAGACATTCAGCGCGCTTAAACTACACAAGCGGAGACACGAGGACAACCCTACACCATTCAAACCTAGAGTTAAGAGGACAAATAAAAAAGCGGTAAAAAAGGCGGTGCAACTGAATACCGCAAACCGGACCGCATTTCCTAAAGCCATCCTCAACAAACACAAGTGTGATATCAAGCTGAAAGAGTTCTTCGAGAGTAACATAAGGGGAGGGGATGTTGAGTTTTGGCAGTTTTTGAAGATATTCAACAAAATGGATCGAGAGAAGATAACAGATTTCAAGGATTTGGAGAGCAGAAGCGATTTTGGGAATCATTTAGATTATTATAAAGATGTTGCAAGGAGTGCCGACGAAATGGAATGTTGA
Protein Sequence: MAKRFKCDICNKKFIDKYNLVSHEKVHSSATPFACSQCPYQGKTKKYLARHTKQMHNEKTGKHKCDVCGKFFHHQSNLRVHAMVHTGEKPHSCNVCGKTFRVTYSLNSHMLIHTNEKPFQCSFCEYACRDSSTLRKHQNKHMGMEKMYECNICKKVYKVLAALKVHIAERHLDVEVRKYPCDQCDRIFKSKKHRKLHIDCIHKRALVCTCPICGRRLMNKNNLPTHLRTHLDERPFSCTHPGCKIAFKDKSSLKKHSVIHKPDLHFACSHCGRKFVRRAHVQRHERVMHAERSRAVECDYCGSSHVQRHDRVMHAKRSRAVECDYCGSRFYSKNYLLKHIQTKHVYKHKFKYICDICGLVTHNKPSIVMHLKYGHSNDNDMQCKICDNDIVYKKHLYLKSHYWKTHNIRYKITRKATNLKAAKKEKVDQPTFEIKVEPIEADSYEEIQLLEVTKLEQEDEMDDCKEYSRRVLAEDMAHALAATSAPEKEFNACFVRHVVGTSRVDPDHGTNNCNALKVDGIDEELNQDVKRRIKQILVTTEKMEKAKVLRERRKQAQREKKEREKKEAQREREERHELARVREMYNERMKAALTKQNERKEKVKITYFKIPEDSNNKNNKTNEENPKISADDEPETSTVDKTVSNNNTPIDDSNNTENTAINQNIDVTNDLSTAYDNTVPSHDETNSSTENDNTTVLSHDQNNDSTANADTSLANDRNNDVENDDTELPNNETNDSTANDDTIFSTDKNNGSAINHENPSEYCERDSMELSATIQTKENATSQEYHTSNEISETSNNLDQPLLERRVRRRASRKFLNYDVLSNDSGKPKKMEFKTYQCYVCFKLYETKEALMLHCQEHFDMCHSVTLSKCPICGHVSHRSIARHLKAEHDVCLKIAINKMKRTEDTCTYTCEANGTKVDVIPSVRYLNKVASETIDKKRREMTLQTIAKPKLVKIRNEWILQKETVPIAYDEIPELSDRDMNKLKVCDNDVDRLGQLSRIARMKSLKMMFPCFKCDRICQTFSALKLHKRRHEDNPTPFKPRVKRTNKKAVKKAVQLNTANRTAFPKAILNKHKCDIKLKEFFESNIRGGDVEFWQFLKIFNKMDREKITDFKDLESRSDFGNHLDYYKDVARSADEMEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -