Prub002967.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
L
Assembly
GCA_963576535.1
Location
OY754907.1:7207891-7223043[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-06 0.00011 22.9 1.7 1 23 86 108 86 108 0.99
2 16 0.73 48 5.2 5.8 1 23 114 136 114 136 0.97
3 16 9.9e-06 0.00064 20.5 4.1 1 23 142 164 142 164 0.99
4 16 3e-05 0.002 19.0 0.1 1 23 170 192 170 192 0.98
5 16 2.6e-05 0.0017 19.2 0.1 2 23 208 230 207 230 0.95
6 16 3.2 2.1e+02 3.2 0.2 3 23 254 276 252 276 0.79
7 16 0.35 23 6.2 0.0 3 23 328 348 327 348 0.97
8 16 0.19 13 7.0 0.0 3 23 363 383 362 383 0.91
9 16 8.4e-05 0.0055 17.6 0.6 1 23 391 414 391 414 0.94
10 16 0.038 2.5 9.2 0.1 1 23 419 442 419 442 0.92
11 16 0.002 0.13 13.3 0.2 1 23 496 520 496 521 0.96
12 16 0.0012 0.076 14.0 0.0 2 23 576 597 575 597 0.96
13 16 0.52 34 5.6 0.1 1 23 605 627 605 627 0.97
14 16 2.2 1.4e+02 3.7 1.5 1 23 734 756 734 756 0.94
15 16 0.0041 0.26 12.3 0.1 1 20 764 783 764 786 0.95
16 16 0.089 5.8 8.1 0.3 1 23 793 815 793 815 0.94

Sequence Information

Coding Sequence
ATGATCATGCTATTCAGGGGAAACAGCAGTAGGCTGGAACACCTCATAGAGAAGATACAAGCGAACAAAGAGAACCAAGACGTTACCACTGAGGATATAAAAGAGGCACTGGGCAGCGTGGGCAGTGCGGCGGGCAGCTCTTGGCCGTCGTCGACGCCGGAGCCCTCGCCGTCGCCCGCCTCCACGCCCTCGGCCGACGcagccgacgccgacgccgacccGCCGTTCACGCTTGGCGCCACTGAGCACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCGAGGCTGTCATATCTCAAGAAACATGAGCAGACGCATTCAGACCAAATGCCGTTCCGGTGCGAGTTTTGTTCGCGATTGTTCAAGCACAAGCGCTCCCGAGACCGGCACGTGAAGTTGCACACTGGTGACAGGAAGTACCGCTGTGCGCACTGCGAATCTGCCTTTTCAAGAAGCGATCACTTGAAGATCCATATGAAAACCCACGACAACCAGAAACCATTCCAATGTACGGTGTGCAACCGCGGCTATAACACGGCGGCAGCGCTGACGTCACACATGCAGGGACATAAGCGGGACCGGGAAGGTAGAGAGCCTGATCGTCGGCGCCCGATGCGATGCTTACGGTGCGGAGAGGCTTTCCGGAGACCTGATCTACTAcagGCTCACATGGCAAGTGCACACGGGGTGGACGCTGCAGCTTTGACCCCACCTCGTCGCGTAGCATCTCAACCACCACCAACTCTACTCGCCTGCATGTATTGCACTCGCGATACCTTCACGAGTATGGAACAACTGCAGTTGCACGTGCGAGCTGCGCACTCTGCCTTGCTCAATGGAGAGGCCATGTCCGCTATTGATCAACCGGCTCCAACCGACCTTAGCCGACGAGCATCAGATGACGCGCCACCAGTTAAGCGACCACGGTCTGGGTCCGGAACCCCTCAAACTACATTATCGCCCAATACATTGCTATGTAACCAGTGTGACGCAGCGTTGCCTGATTTCGAAGCATTTCGCGCACATTTAAAAGGACATCTTGAAGAAGGCGGAGAAATGACGCGGACCAGCCCCGCTCCCTGCGTCCATTGCGGAGCTACGTTCGCTGATGCCGCAGCTTCTGAGCGCCACCTCACCGCACATTACTTAGCAGTCTCCTGCGAGTATTCTTGCCACAGCTGCGCTAGAAGCTTTCCGACGCCAGATGATCTACAGAAGCATCTGTTAGATCTTCATGCTCATCATCTCTATCGATGTTCTCTATGCAAAGAGATATTCGACTCTAAAGTTGCAATTCAGGTTCATTTTGCTGTCGCTCACAGTGGGGAAAGCAAAGTATGGGTATGTCGAGGTTGTGGAAGCGGCGCTGGAGCGTTGCGCTCCGAGGCAGACGGGGTGGCTCACGTGAGAGCCCGACATGGCGGCGCGCGCTGCTCCTGCGGCGCCTTGCTCGGCGGCCCGAGGCTACGCACCCGTGCTTACAGATGCCCCGTCCCGACATGCTCCGATGCCTTCGCAGTTCAGTACCTGCTGGAGCGGCATATGCAAGTCCATCATGCAATGGCTCAACAGGTGTTGAATGGCGAGTTGACCAGACCAAAACGCGTGGAGAACAACAACAGCTCAGAAGCTGACGGTGCTTGCTCTCCATGCACCGCTACCGAGCCAACTATTCCCGTGGGCGAAGAACGTCGAAGGAAGAATGGTGCAGTAGCGTTGCAGTGCGCTTACTGCGGAGAAAGAGCTAGAAGCCGCGCGGAGCTTGAAGCGCATACAAGGGCTCATTCTAGTGCAGTTGCTGCGAGGCATAAGTGCCTCATTTGTGACGAAATTCTGCAGTCTGCTGCTGTGTTGGCCGAACATAAACTGACACATTGCAAGGTGGTTGCTGGTGATACCTGCTCTAGATGCAGAGCTCGCCTGCTATCTGAGGAGTCATTCCTCAACCACATGGCACGCCACCACCCGGCTCTTCCCGCGCCCTGTGTGGTTTGCCGACAAACACTAGCGTCCGAAGCCGAAGCGAGATTACATGCACGCTTTCACCTCCGCCCTAACGAGGATGAACAAAGATGTGCGATCTGCCTGCGCGCGCTGCCGGAGGGCGAGGCGGGCGAGGGCGCGCGCGCGTGCTCGTCGTGCTACGCGCGGCACGCGGCCCCCCCCGCGCGCGCGCCACCCGCCGCCGCCGACCACGACTGCCGTCTCTGCCGGCGCGCGCTGCACTCGCCCACCAGGCTGCAGGCGCACCTCATCGAGCACACCTTCGCAGGCATCGGCGCCTTCACCTGCTACCTCTGCTCCGCGGTGTTCACCAGCGCCGCCGGCCTGCAGCGCCATCTGCCAGAACACGCGTCGGCGCCGAGGCCGTACGACTGCGGCCGCTGCGGCATGAAGTTCTTCTTCCGCGCGGAACTGGACAACCACGCGTTCGTCCACCTAGAAGAAGCCGAGATCGCTCAACGAGCGTTCTACGAGGCGTACGCTCGTGGAGCGGCCAGTGCCTGGGCTGCGCTGGCCCCGCCCGAGCCAGCTCCCGTGACCACACCAGCACCAGAAGTGAAGCAGGAACCGGAGATTAAAGAGGAACGCAGCGACGAATACATTGAAGTGGCTTCTCCGCCGCCGCCGGTTCCTCCTCAAACGCCGGCAGTTCGAACTCCACCCCCAGTAGTGAAACAAGAGAAAGTTGATGAAGAATAA
Protein Sequence
MIMLFRGNSSRLEHLIEKIQANKENQDVTTEDIKEALGSVGSAAGSSWPSSTPEPSPSPASTPSADAADADADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRPMRCLRCGEAFRRPDLLQAHMASAHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEAMSAIDQPAPTDLSRRASDDAPPVKRPRSGSGTPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGEMTRTSPAPCVHCGATFADAAASERHLTAHYLAVSCEYSCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRGCGSGAGALRSEADGVAHVRARHGGARCSCGALLGGPRLRTRAYRCPVPTCSDAFAVQYLLERHMQVHHAMAQQVLNGELTRPKRVENNNSSEADGACSPCTATEPTIPVGEERRRKNGAVALQCAYCGERARSRAELEAHTRAHSSAVAARHKCLICDEILQSAAVLAEHKLTHCKVVAGDTCSRCRARLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRALPEGEAGEGARACSSCYARHAAPPARAPPAAADHDCRLCRRALHSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGMKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPAPVTTPAPEVKQEPEIKEERSDEYIEVASPPPPVPPQTPAVRTPPPVVKQEKVDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_01429280;
80% Identity
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