Basic Information

Insect: Plemyria rubiginata
Gene Symbol: ham
Assembly: GCA_963576535.1
Location: OY754921.1:7278898-7325577[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.042 2.7 9.1 0.2 2 23 329 351 329 351 0.93

2 9 0.00019 0.012 16.5 1.5 1 23 358 381 358 381 0.93

3 9 2.5e-08 1.6e-06 28.7 0.1 1 23 387 410 387 410 0.96

4 9 7.4e-06 0.00048 20.9 1.1 1 23 416 438 416 438 0.95

5 9 7.5e-05 0.0049 17.7 6.1 1 23 444 466 444 466 0.99

6 9 0.00026 0.017 16.0 0.4 2 21 474 493 473 494 0.94

7 9 1.8e-08 1.2e-06 29.1 0.7 1 23 884 906 884 906 0.98

8 9 6.5e-07 4.2e-05 24.2 1.7 1 23 912 935 912 935 0.97

9 9 7.1e-06 0.00046 21.0 3.3 1 23 941 963 941 963 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.042	2.7	9.1	0.2	2	23	329	351	329	351	0.93
2	9	0.00019	0.012	16.5	1.5	1	23	358	381	358	381	0.93
3	9	2.5e-08	1.6e-06	28.7	0.1	1	23	387	410	387	410	0.96
4	9	7.4e-06	0.00048	20.9	1.1	1	23	416	438	416	438	0.95
5	9	7.5e-05	0.0049	17.7	6.1	1	23	444	466	444	466	0.99
6	9	0.00026	0.017	16.0	0.4	2	21	474	493	473	494	0.94
7	9	1.8e-08	1.2e-06	29.1	0.7	1	23	884	906	884	906	0.98
8	9	6.5e-07	4.2e-05	24.2	1.7	1	23	912	935	912	935	0.97
9	9	7.1e-06	0.00046	21.0	3.3	1	23	941	963	941	963	0.98

Sequence Information

Coding Sequence: ATGTTAAACTTTTCCAATATGCTGAACATTGACACGGAAATGAAAATGAAGATGACAGCAGCGGACAGTCAAGAGTCCGTCAGCCCGCCGCCGAGTCCTACAGACTCCGCTACATCAGAATCTGCACCCACCCTAGTTCACATCAAGCAGGAGACCATGCCTCCTGGGACAGACGTCAAGGAATACTACGGTGCCATAGACTTCAATCTATCGGACACATACCTATCACCCAACTTTCCGGACTATGGGAGATTACATAGACCATTGAATTGGTCGAACCAAGGGCTCGACTTGAAGAGTCCAAAAGATGAAGCAAAGAAAGATGCGAAAGATGACGATCCGGAAGGTTTATGCTTACCGATTGAGTTTATTCACAAGAATAGTGGGATTTTTGCGAGAGTGAACATCACCAGTGGCAACAAATACGGCCCTTTCGAAGGGAAGTGGGAGACGCAGCCGCTAGACAGACGATACGCTTGGGAGGTCCTAGGCAAGAATGGCGTACGTGGCTGGCTGGATGGAACCGACGAGAAGACCAACTGGATGAAGCTAGTGCGATCCACCAACTACCCTGAAGATGTCAACGTGCAGCATTTGTTGATAAATGGCCAAGTATGGTACAAGGTGGTCCGTTGGATTTCAGCCGGACAGGAACTGCTTTTGGGACCCAGAACTCCACTGCCGCTTCTAGATGTCGTCGGCTCGCAGTCTAGTGCTATCTCAAACAATATTATAGACCATCTGCTCACCAACGAAAAACGAAGCAGTCAGTCTCTCGATCAGTACAACAGCCAGTCATTGGAGAAGTTTAACAGTCAGCCTTTGGAAAAATTCAGCAGTCAATCCTTGGAGAAGTTCAGCAGTCAACCCTTGGAGAAATTCAACAGCCAGCCTTGTGATAAGTTCAATATTAAGTCTTTGGAGAAATACGCGCCGCTGACTGAAGAGAGAAACGAAGAAGAAGACCGCGAAGACACCGAGCCTAGGTGCTCGTTCTGCGACGAAGCGTTCCCTAATATTGAAGCGCTTGATCACCACCTAATCCAGTCGCACGCGCAGCCAGCGTCAGCTTTCCACTGTGAGCTGTGCAATCGATCATACAGCTCCCGATCCCTGCTGCTGCGCCACCGAGCTCTAGCTCACAGCAACATCAGGAAATACCCTTGCGAGAACTGTCCCAAGGTATTTACCGATCCTTCCAACCTGCAGCGCCACATCCGCGCGCAACACAAGGGCGCCCGCAGTCACGCCTGTCCAGAGTGCGGGAAGACCTTCGGGACAGCCTCCGGCCTTAAGCAACACACCCACATCCACTCCAGCATCAAGCCGTTCCAGTGCAAAGTCTGCTTTAAGGCTTACACTCAATTTTCTAACTTGTGCAGACATAAACGTATGCACGTTGCCTGCCGAGCTCTTATTGAATGCGTCAAATGCGGCCAGTCCTTCACCTCCTACGCTTCTTTAACTAAACACAAGAGATTTTGCGACACGGCCACTGCGACCTCTGTTGGCCTCCGAGGACAGATGTCTCAAGGGCTCCCACAGATTCCGAGTCTATCAAACGTCGGAATGAATAACCCGAACACTCCTAGCCCCTTCCCGATGTATCGTCCGGGTCTATCTCTATCATATAACTCCTTTGCTCATTACCCAGCTTGGTTTTCGGCTGCAGCTGCGGCTTGCCCGCCTGAATTCCTGAACCCTCTACTCATCAACGTTCAGGGAGCAAGGCTTGCTATGGAACATGACCTGGCTATGAACGCCAACTTAGCTAAACAACAGGAAGGACGGATGTCAGTCAAGAGCATCGACAGTTCAACGTCTCTCGATGAAATCAGGAAGTCGAAAGACTTGGACTTTGAGTCCAACAGGAGTGAAAATACAGACAAGGCTACACCAAACAAGTCTCTTGGCTTGTACTCTAAACATTCTCCACTATCTACTGAGGATAATTCTTCACAGCATCGACCCTCACCCATCATGCCGATGCACACACCAATGGTGCCGTTGAACTTTGGTCGAGATGAGCACAAGAGGAAATCACCATTTAGCTTTTTCCTAAAACATAATAACAACGACATCCAAGAAAGAAAATCAGTGTCACCCTCTCAACCCCAAGATTTGGTGAAGCATGTCGTGGAAGATGATAAAATTTCGGAATATTCTGATGTAGAGGAAGCTAATAAAAAAGACCAGAGTGACCAGCCTCTTGATCTGTCAATATCTCGAAAGCAAAGTGACAAGGAATCTGATGCTGATGACAACCGCTCCTTTCGTCACTCTGTCAAGTCGTACTCTCCCCCAGAGAGCCCTGAAAGAAGCAAAACTCCTGAGAACGATAACGTGGATGTCGATGTAGAAGGAGTAGAGCCAAAACGCGAAGATTCCCCACCGCAATTAGTGTCGTCACCACTTGCTTTCCCGATGCCCGTCCATCCACAACACAACCTCATCGATGCTATGTACCGTCCGAGATTTCCGACTTTCCACTCAGCAGAGTCTATTCTCAACTCAACCCACTCACCGTACGTTCCAAGCCCGTTCAATTTTTTATCCCCACTTCTCAACACTGACGGGCCAGATAGGCAACCGAATGCGTATGCAAAGTTTCGCGAGCTGAGTACGGGAGTCAGCAAAGTCCGCGATCGCTACGCGTGCAAATTCTGTGGAAAAGTTTTCCCTCGCAGTGCAAACCTGACTCGGCATCTCCGCACTCACACTGGTGAGCAGCCTTACAAATGCAAGTACTGTGAGCGCTCATTCTCTATCTCATCGAACTTGCAGCGCCATGTGAGAAACATCCATAACAAGGAGAGGCCGTTTAGATGCCCGTTGTGTGATAGATGCTTCGGGCAGCAGACGAACCTTGATCGGCATCTGAAGAAGCACGAAGCGGAGGGTGGTGATTCGCCTAGTTCTGCGGATACGGAACGCGAGGACGCGTATTTCGATGATATTAGGTCGTTTATGGGAAAAGTGACGTGTTCTCCTCCGGCATCATCGCCGCATGCGCCCTCCCCGCACCCCTCACACCCCCCGCATCGGCCGTCGCTGGCAATTTCCACATAG
Protein Sequence: MLNFSNMLNIDTEMKMKMTAADSQESVSPPPSPTDSATSESAPTLVHIKQETMPPGTDVKEYYGAIDFNLSDTYLSPNFPDYGRLHRPLNWSNQGLDLKSPKDEAKKDAKDDDPEGLCLPIEFIHKNSGIFARVNITSGNKYGPFEGKWETQPLDRRYAWEVLGKNGVRGWLDGTDEKTNWMKLVRSTNYPEDVNVQHLLINGQVWYKVVRWISAGQELLLGPRTPLPLLDVVGSQSSAISNNIIDHLLTNEKRSSQSLDQYNSQSLEKFNSQPLEKFSSQSLEKFSSQPLEKFNSQPCDKFNIKSLEKYAPLTEERNEEEDREDTEPRCSFCDEAFPNIEALDHHLIQSHAQPASAFHCELCNRSYSSRSLLLRHRALAHSNIRKYPCENCPKVFTDPSNLQRHIRAQHKGARSHACPECGKTFGTASGLKQHTHIHSSIKPFQCKVCFKAYTQFSNLCRHKRMHVACRALIECVKCGQSFTSYASLTKHKRFCDTATATSVGLRGQMSQGLPQIPSLSNVGMNNPNTPSPFPMYRPGLSLSYNSFAHYPAWFSAAAAACPPEFLNPLLINVQGARLAMEHDLAMNANLAKQQEGRMSVKSIDSSTSLDEIRKSKDLDFESNRSENTDKATPNKSLGLYSKHSPLSTEDNSSQHRPSPIMPMHTPMVPLNFGRDEHKRKSPFSFFLKHNNNDIQERKSVSPSQPQDLVKHVVEDDKISEYSDVEEANKKDQSDQPLDLSISRKQSDKESDADDNRSFRHSVKSYSPPESPERSKTPENDNVDVDVEGVEPKREDSPPQLVSSPLAFPMPVHPQHNLIDAMYRPRFPTFHSAESILNSTHSPYVPSPFNFLSPLLNTDGPDRQPNAYAKFRELSTGVSKVRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPPASSPHAPSPHPSHPPHRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00377331;
90% Identity: iTF_01429255;
80% Identity: -