Prub021088.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754931.1:1051929-1078190[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.61 40 5.4 1.1 2 17 70 85 69 86 0.87 2 13 4.5 2.9e+02 2.7 2.3 1 23 390 421 390 421 0.76 3 13 0.049 3.2 8.9 0.0 1 23 426 448 426 448 0.96 4 13 2.2e-05 0.0014 19.4 0.5 1 23 461 483 461 483 0.97 5 13 2.1e-05 0.0014 19.5 3.3 1 23 489 511 489 511 0.99 6 13 0.00018 0.012 16.5 1.5 1 23 518 540 518 540 0.99 7 13 5.1e-05 0.0033 18.3 0.2 1 23 546 568 546 568 0.93 8 13 1.4e-06 9e-05 23.2 0.1 1 23 574 596 574 596 0.98 9 13 4.6e-06 0.0003 21.6 1.4 1 23 602 625 602 625 0.96 10 13 5.3e-06 0.00034 21.4 1.7 1 23 631 654 631 654 0.95 11 13 0.00027 0.017 16.0 2.4 2 23 661 682 660 682 0.97 12 13 3.1e-05 0.002 18.9 1.1 1 23 688 710 688 710 0.97 13 13 0.0036 0.24 12.4 0.1 1 21 716 736 716 740 0.91
Sequence Information
- Coding Sequence
- ATGGCACAAACACTGAATACAGAAGAACGGTTTGTGCTGTGGTCACAACGGTGCATTGTTTGTGACACAAGTGGACCTTTCGGGAAGAGCTATATCCGAGATATCTTCACTAACAAAAACCCATGTCCCAGTGGTAAGCACCTCCTGGCAACACTATGTGATATCATTGACAAAGATCTGGATGAGGAAAGTGTACATACTAAGATAATGTGCAAAGAATGTCACAAGATCTGTACAAACTATGATATGTTTAAAACTAaCATGTCCAATTTGAAAACAAAGCTGTCGGCCATGTTTTATAGCACGCAAAAGGCTGCCATCACGGAAATTGCTACTGTTAAACCAGACGTTCGAACCACTCCTAACAAAGCACCTAAAGGAAAGTTCGTGGTACCAGCTTCGAAGCTACAACCATTGCCAGCTGACTATCAACTGAATCTGGGTAAAATAGCCGCCATGACTCGACCTAAACTGCTGACACCAAAACCTCTTCTAAAAATGACGATAGGCAACTCAGTGCTCACACAAAGCCTGACCACCAGCTCGGTTAAGATCCTGCAGCCCAACAAGCCAGAGGACCAAACCATCAATGTCAGCAATTGGAGTATCGATAGCATCCCGAGTGAAATATTCTCCAACAATGACGAGAATGATGCGGAGAACCAGGATATGGAGATAGATGAAAATTGCAAAGAAATACCCGCGTCTGACGATGAGCCCATTATGATAGATGCTTCCACCATTAAGACAGAAAACGTCGATGGCATCCAATACTTAAACTCGGAGAACTTCGAATTGCTGTTAGATGGACAGGACGACGACGATCAACaAACAATAGTTGTGGATGCTAACAACTCTATACTACAGATGATGTCGGGGCAGAAATTTGTATACGAGAATGGACAACTGTCGTTGGTGATGgacgataatgatgatgatgaagagcaAGATTCGAACGACGAGGAGTCACAGATAGAGCTCCAAGTTTCCGGAGACGAGGAAACTGCCAACGCCATCATAGCAGCCGCCCAGGAACAAGGCGGTGCCTTCATAAAGGTAGAGAGTGGAGAGATGTACCGCGTGAAGTCTGTGCAGAGCAAGCCGTCGGAACCCGCACCTGCGGCGCCGGACACCGCTACGCAGCTCGTGGCGAAAGACGGCGACAAGTATCGATGCCTTGTGTGTGATAATCAACGAGGTCCGATTAAGATGACGTATACATGTGACGCCAGCGATATGGTGAAGCACATGAAAACCCAGCATTCGGCCAAGGTGTATATCTGTGCACTATGTGGCATCATTATGCGGAACCGCTCCGAATACGCTACGCATATGGCGGAACACACAAAGAAATTACCCCGAACATGCAAAGCGCGCACCTACGACTGCGAGATTTGCAAGAAGGGGTACACCTCGCGCACTTTACTGCAGGAACATATGAACCTCCACACCGGAGACAGGCCGTACTCCTGCCACATCTGCGAGAAGACCTTCGCCTCTAAGTACACCACGCAGGCGCACCTGAAGACTCATCAGaaTAGGCCACGTCCGTTTAAATGCGATAGTTGCGGCAAATCGTTCCTCTCTCTACAAAATCTGAACCAGCATGAGAAAACACATCTCGGCATCAAGAGCTTTGTGTGTAATATCTGcaACAAAGCGTTCGGTACTCAGCACAGCTTAGAAGTGCACGGCGTAGTGCACAGCGGACAGAAGACTCACGTGTGCCCTACATGCAACAAGGCCTTCGCGAGGCGCGCCGAGCTGGCAGATCATATCAGGATACATACAGGTGAACGTCCATTCGAATGCGAGGTGTGCGGCGCCCGGTTCTCCCAGCGCTCGAACCTACACTCGCACCGGCGAGCGACGCACTACGGCGACAAGCGGCATTCCTGCCCGGATTGTCCGAAGCGGTTCAAACGGAGAAgACTACTGCAGTACCACATAAAGGCGGTGCACACGGGCGAGCGGCCGCTAGAGTGCGAGGTGTGCCATTCCACGTTTGTGTACCCCGAGCATTACAAGAAACATCTCAGGATACACAACGGCGAGCGCCCTTACTACTGCGAGATCTGCGGCAAAGCGTTCAACTCGCGCGACAACCGCAACACGCATCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGCGTGCGGCGCCTCCTTCATGCGCAAGCGCATGCTCGTCGCGCATATGAACGCTAACGGTCATTTAGCGGAATCTATAGTAGTGAACCAGCCAAGAGTCACCAAAGTCAATGAAAATATTACAGATGAAAATGGCCAAATCATCCGATTCATTCAAGTGAAGATGCCGGATGGCAACAACGGCTGGGTAGCACTCAACGACTGA
- Protein Sequence
- MAQTLNTEERFVLWSQRCIVCDTSGPFGKSYIRDIFTNKNPCPSGKHLLATLCDIIDKDLDEESVHTKIMCKECHKICTNYDMFKTNMSNLKTKLSAMFYSTQKAAITEIATVKPDVRTTPNKAPKGKFVVPASKLQPLPADYQLNLGKIAAMTRPKLLTPKPLLKMTIGNSVLTQSLTTSSVKILQPNKPEDQTINVSNWSIDSIPSEIFSNNDENDAENQDMEIDENCKEIPASDDEPIMIDASTIKTENVDGIQYLNSENFELLLDGQDDDDQQTIVVDANNSILQMMSGQKFVYENGQLSLVMDDNDDDEEQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSKPSEPAPAAPDTATQLVAKDGDKYRCLVCDNQRGPIKMTYTCDASDMVKHMKTQHSAKVYICALCGIIMRNRSEYATHMAEHTKKLPRTCKARTYDCEICKKGYTSRTLLQEHMNLHTGDRPYSCHICEKTFASKYTTQAHLKTHQNRPRPFKCDSCGKSFLSLQNLNQHEKTHLGIKSFVCNICNKAFGTQHSLEVHGVVHSGQKTHVCPTCNKAFARRAELADHIRIHTGERPFECEVCGARFSQRSNLHSHRRATHYGDKRHSCPDCPKRFKRRRLLQYHIKAVHTGERPLECEVCHSTFVYPEHYKKHLRIHNGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLACGASFMRKRMLVAHMNANGHLAESIVVNQPRVTKVNENITDENGQIIRFIQVKMPDGNNGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -