Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754922.1:11918213-11922804[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0026 0.17 12.9 4.0 1 23 189 211 189 211 0.97

2 14 2.1e-05 0.0014 19.5 4.9 1 21 217 237 217 238 0.94

3 14 0.0001 0.0067 17.3 2.5 1 23 257 279 257 279 0.97

4 14 2.2e-05 0.0015 19.4 0.2 1 21 285 305 285 306 0.95

5 14 1.9e-05 0.0012 19.6 2.3 2 23 318 339 318 339 0.97

6 14 2e-06 0.00013 22.7 2.0 1 21 345 365 345 366 0.96

7 14 0.3 19 6.4 0.4 2 23 375 397 374 397 0.89

8 14 0.0019 0.12 13.3 2.6 1 23 403 425 403 425 0.98

9 14 4.4e-05 0.0029 18.5 0.5 1 23 431 453 431 453 0.97

10 14 0.00039 0.025 15.5 0.5 1 23 459 481 459 481 0.97

11 14 4.9e-05 0.0032 18.3 0.9 3 23 489 510 487 510 0.96

12 14 3.5e-05 0.0023 18.8 0.1 1 23 516 538 516 538 0.97

13 14 0.00068 0.044 14.7 3.6 1 23 544 566 544 566 0.97

14 14 0.0077 0.5 11.4 0.1 1 21 572 592 572 593 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0026	0.17	12.9	4.0	1	23	189	211	189	211	0.97
2	14	2.1e-05	0.0014	19.5	4.9	1	21	217	237	217	238	0.94
3	14	0.0001	0.0067	17.3	2.5	1	23	257	279	257	279	0.97
4	14	2.2e-05	0.0015	19.4	0.2	1	21	285	305	285	306	0.95
5	14	1.9e-05	0.0012	19.6	2.3	2	23	318	339	318	339	0.97
6	14	2e-06	0.00013	22.7	2.0	1	21	345	365	345	366	0.96
7	14	0.3	19	6.4	0.4	2	23	375	397	374	397	0.89
8	14	0.0019	0.12	13.3	2.6	1	23	403	425	403	425	0.98
9	14	4.4e-05	0.0029	18.5	0.5	1	23	431	453	431	453	0.97
10	14	0.00039	0.025	15.5	0.5	1	23	459	481	459	481	0.97
11	14	4.9e-05	0.0032	18.3	0.9	3	23	489	510	487	510	0.96
12	14	3.5e-05	0.0023	18.8	0.1	1	23	516	538	516	538	0.97
13	14	0.00068	0.044	14.7	3.6	1	23	544	566	544	566	0.97
14	14	0.0077	0.5	11.4	0.1	1	21	572	592	572	593	0.91

Sequence Information

Coding Sequence: ATGTCCGTGTGCCGGGTGTGCCTTATCGGTGACGTGCATCTAAAAAGTCACAACATTGAAGATGGTAATCTCTTAGAACTATACGAAAAACTCACAGGTGCCAAGGTCAGCACAGAGGACAGGATGCCTAAAACAATATGCTCCTATTGTTATTGTCGCCTGAAGAGGTTTGGCCAGTTCTTAGAAGTGGCTcataagtcagaaatcattctTCTAGAGCTGTTTAATAGTGGTTTCCAAAAGGTAACACGCAACACTATTCCTGCATCAAGTTTTGAAACAATACAGACCTTATCAATAACTCCGGCTCAGACTGTGTATATTGGCGAAAACAACTCGACCAATGACTTTTCTGCAAACTCGCTGCCCAGCTCCGTTCAGAACCGACTTTTGAACAGCTACATCTGCACATATGATCCTCCAGTAACCTTTAAGATAGAAAACATTAaagaagaaacaaaatattgtgAAGATGACATTGCTAATACTGAGATTATGTGTATTGAGGAGGTGGACAGTAAAGAGGCCTTATATAAAAGTGAATCAAGCAAAGAGAGAATGCCTTTCTGCTGCGATGTTTGCGCGAAAAAGTTTACGACAATACACCTGCTAAAGTCGCACTTAATAAGTCATTCCAGAGAAAAACCGCATAACTGTAAATATTGTAACAAATCTTTCTCCAGAAAACACAACATGGTGCAGCACATGAAAAGCTGTACAAAAGAACTGATCAAGTGTGAATCTCCAGATGTACATGATGGTCGGTCTTTCCATTGCGATCTGTGCAACAAAAAGTTTGGCTCGAAATCTCTCCTGAAATCTCATACAGCTGTCCACAGTGGAGAGAAGCCATATAACTGTGAGGGGTGCAACAAATCTTTCGCTAGGAAGCAGGGCATGAAACAACACATGATGATTTGCACAGCAGTTGAACCCCATGTACCGACCAACAGCTGCCCTTATTGCAGCAAAACGTTCAATAGTGACGACCACCTGAGAGAACACATGACATCGCACTCTAGAGAGAAGCCGTACACATGCGATAAATGTCACAAATCGTACACAACGAAAGCAAACTTGCGTCAGCATTTGAAGATTTGCTTCCTCGAGAACGAGGCGGTGACGTGCTCGCTCTGCGGCGCCGCGTTCCGCTGCAGGCGCGCGCTGAGCCAGCACCGCGCCGCGGCGCACTCCGCACTGAAGGCCTTCCGCTGCGACACGTGCAGCGCCCGCTTCTGGTACAGGAGCCACTTGAAGGTGCATCTCAGGATCCATACGGGAGAGAAGCCTTTCGCTTGCGAAGTTTGCGGCAAGACCTTCACTCTGGGGAACCATCTGAAGGCACATCTTGGGACCCACACGGGGGAGAAACCGCATTCCTGCGATGTTTGCGGAAAAGCGTTCCTCGCTCGTTTCAATCTCTTAGAGCACATGCGCGTGCACTCGGGCGAGCGGCCCTACGGCTGCGACGCGTGCGGCAAAGCCTTCGGGCACCAGAGCACGCTGCGGCAGCATCGGCGCAGCGTGCACGCGCAGTCTAAGCCGTTCGCGTGCACGCGCTGCGCCTTCTCGTTCGCGCGCGCGAGCGCCCTCAGCGCACACATGCGCGTGCATACGGCGGAGAGGCCTCACGTCTGTCATCTCTGCAATAAGGCATTTATCGAAGTGCGCCATTTAAAAGGGCACATGCAGGTGCACTCTAGCGCGAGGGCGCACGCATGCGCGGCCTGCGGGCTCGCGTACAAGCGCGCCGAGCATTTGCGGCTGCACGTCCGGTCCAAATGCAGGGCCCAGCCCGCCCGCACATTCACTAACTAA
Protein Sequence: MSVCRVCLIGDVHLKSHNIEDGNLLELYEKLTGAKVSTEDRMPKTICSYCYCRLKRFGQFLEVAHKSEIILLELFNSGFQKVTRNTIPASSFETIQTLSITPAQTVYIGENNSTNDFSANSLPSSVQNRLLNSYICTYDPPVTFKIENIKEETKYCEDDIANTEIMCIEEVDSKEALYKSESSKERMPFCCDVCAKKFTTIHLLKSHLISHSREKPHNCKYCNKSFSRKHNMVQHMKSCTKELIKCESPDVHDGRSFHCDLCNKKFGSKSLLKSHTAVHSGEKPYNCEGCNKSFARKQGMKQHMMICTAVEPHVPTNSCPYCSKTFNSDDHLREHMTSHSREKPYTCDKCHKSYTTKANLRQHLKICFLENEAVTCSLCGAAFRCRRALSQHRAAAHSALKAFRCDTCSARFWYRSHLKVHLRIHTGEKPFACEVCGKTFTLGNHLKAHLGTHTGEKPHSCDVCGKAFLARFNLLEHMRVHSGERPYGCDACGKAFGHQSTLRQHRRSVHAQSKPFACTRCAFSFARASALSAHMRVHTAERPHVCHLCNKAFIEVRHLKGHMQVHSSARAHACAACGLAYKRAEHLRLHVRSKCRAQPARTFTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -