Prub017855.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
ZFX
Assembly
GCA_963576535.1
Location
OY754925.1:11281140-11283532[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.4 5.5e+02 1.8 2.0 2 23 4 25 3 25 0.89
2 16 0.26 17 6.6 4.1 3 23 75 97 75 97 0.94
3 16 4.6e-07 3e-05 24.7 1.4 2 23 155 176 155 176 0.97
4 16 0.00067 0.044 14.7 0.2 5 23 186 205 184 205 0.94
5 16 0.00043 0.028 15.4 0.5 1 23 225 247 225 247 0.97
6 16 7.6e-05 0.0049 17.7 1.2 1 20 252 271 252 273 0.94
7 16 0.023 1.5 9.9 0.8 1 23 406 428 406 428 0.98
8 16 0.0001 0.0066 17.3 0.6 1 23 434 457 434 457 0.92
9 16 6.8e-05 0.0044 17.9 1.4 3 23 465 485 464 485 0.98
10 16 2e-07 1.3e-05 25.9 1.9 1 23 491 513 491 513 0.99
11 16 0.00087 0.056 14.4 0.1 1 23 519 541 519 541 0.97
12 16 6.1e-05 0.0039 18.0 0.1 2 23 568 590 568 590 0.94
13 16 0.0073 0.47 11.5 1.3 3 23 598 619 597 619 0.93
14 16 0.029 1.9 9.6 0.1 3 23 626 646 625 646 0.98
15 16 0.025 1.6 9.8 0.0 6 23 655 672 654 672 0.97
16 16 0.11 6.9 7.8 0.2 6 23 682 701 681 701 0.91

Sequence Information

Coding Sequence
ATGCAGCTCGTCTGTCACAAATGTGAGTTGAAGACTTCCAACGAACTATTCTACCAGCACTTGAGCTCTCAACATGAATATGTGACAGACAAAGATGATGTAGAGGCATTCGTGAGAGACCATGTGACATTCGACGAGGCACTCGATTCTGATTTCGATAGAGATTGTGATACACCTAAGTCTTCATCTTCCGAAACATCGGAAGTGGCGCAGCACTTAGGATGCCCCATGTGTCCCACCGGCACCACATGTTCCACCCGCTCGCAACTCTTCCACCATCTCTCTAAACATGACGCTAATCTCGGTAGCATCCCGTATTGTGGCTTCGCAAGAAATAAGACCGAACTGGATCTCCCAGCATCGGATCCAGGCTCGTCGACGGCTCACGTCCACGACCGTGCGACATACGACGTCGGTCCATCTCAGGCGACAGTCGAGACTAACCAGAAACGCATCCCGGCCGTCTGCCCCATCTGCAACCGCACCTTCTCCAACAAGTACAACATGTTCAATCATATGAAAAGTCACGGAAGAGCGAGCGAGAAGTTCGAGTGCGACTGCGGGCGGAGTTACAGCACGCGCGGCAACCTGGCGGCGCACAAGCGCGCGACGCACGCTCGCCCCGCGCCCccgccccgcgccgcccgccccgCACCAGCGTCCGCGCCGCCCTTCGCGTGCGCGCTGTGTCCGCGCGCCTTCCGCGCCAAGGCCTCGCTCGCGCGGCACCGCCACACGCACCGCGCGCCGCCGCACGAGTGCGCGCTCTGCGGGAGGAGGTTCCGACGGAAGGCGCATCTCAGATACCACCTCTCCGGCTCCGCGCGCTACTCCCCCTTGGACTCTCGCGCGCCCTCGACTCGAACCCCCGTCAAGACGAACGTTGCGTTGCGCAGGTCCGCCTCGCCGGAGCGCTTGCCCGACCGCGACCGCGACTCCGACGAGGGCGCGCCGCTCGCCGCGCTCGCCGGCGCCAGCGCCCCGCTCGCCCGGCTGCGGCGCGCGCTGCGAGACCTGCGCGACCACCTCGTCGCACGACACCCGCGGCCGCGCGCGACCCGTGCCCGCGCCGACGACGACCAGCCTCCGCCGGAGACCGGCGACGCCGACCCCTTCGACGACTTGACGCGGCGCAACATGCGGCGCGACCGCTTCGACGAGGCGACGCGGCTCGCGCTCGACGCGGCGCGCGTGCGGtgcggcgcgcgcgccgcgtACGAGTGCGGCGCGTGCGGGCGCCGGCTCGGGTCCGCGCACGCCTTCGTGCACCACCGGCGCATCCACTCGGGCGAGCGGCCGCACGTGTGCCACGTCTGCGGGAAGCGGTTCCGCGCGCCGCAGGGGCTCGCGCGGCACCTCGCCGAGACGCacgagcgccgccgccgccgcgcctgCCGCCTCTGCCGCCGCACCTTCGCCAACGAGCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGCCCCTTCCAGTGCAGCGAGTGCGGCAAGCGGTTCGCGCAGAGCGGCTCGCTGCACGCGCACCGGCGCACGCACTCGGCGCGCCGCGCGTTCGTGTGCGCGCACTGCGGCGCCGCGTTCCGCCTGCGCGCCGGGCTCGCGCGCCACGCGCTGCGGCACGCGGGCGCCGTCGCCGCGCGGCACGCGCGTCGCCGGGACCTAGTcgcgccgtcgccgccgccgccgccgcctcggcGCGAGTGCGGCGCGTGCGGGCGCGCGTTCAGCGACGCGGCGAACCTGTCGCGCCACCGCCGCGAGGTgcacggcgcgcggcgcgggcgcgcgtGCGGCGCGTGCGCGCGGCGGTTCTCGCGCGCGGAGCACCTGCGCGCGCACGAGCGACACGCGCACGGCGGCGACGCGCTGCTGTGCGAGCGGTGCGGCGCGCGCAGTGCGTCCGCGGCGGCGCTGCGCTCGCACCGGCGCCTGCACGCGGCGCCGCGGCACGCCTGCGCGTGCGGCGCGCGGTTCCGGCGCGCGGCCGAGCTGCGCGCGCACGCGTCGGTGCACGTCGGCGCGCGCCCGCACGAGTGCGCGTGCGGCCGCGCCTTCCGCCTGCGCGCGCAGCTCACTTTGCACGCGAGGCGGCGCGCACACGCCCACTGCGCGCCGCGCGAAGGCGGTGCGATCAGCGATCCGAGCCAAGCTTCGCTCGATAAAACCGAATACGATTCAATGAACGAAAGTGACCTAACTGAAAACCTGGTGTTTGACCCCCGAACCTGA
Protein Sequence
MQLVCHKCELKTSNELFYQHLSSQHEYVTDKDDVEAFVRDHVTFDEALDSDFDRDCDTPKSSSSETSEVAQHLGCPMCPTGTTCSTRSQLFHHLSKHDANLGSIPYCGFARNKTELDLPASDPGSSTAHVHDRATYDVGPSQATVETNQKRIPAVCPICNRTFSNKYNMFNHMKSHGRASEKFECDCGRSYSTRGNLAAHKRATHARPAPPPRAARPAPASAPPFACALCPRAFRAKASLARHRHTHRAPPHECALCGRRFRRKAHLRYHLSGSARYSPLDSRAPSTRTPVKTNVALRRSASPERLPDRDRDSDEGAPLAALAGASAPLARLRRALRDLRDHLVARHPRPRATRARADDDQPPPETGDADPFDDLTRRNMRRDRFDEATRLALDAARVRCGARAAYECGACGRRLGSAHAFVHHRRIHSGERPHVCHVCGKRFRAPQGLARHLAETHERRRRRACRLCRRTFANEQNLRQHLRTHTGERPFQCSECGKRFAQSGSLHAHRRTHSARRAFVCAHCGAAFRLRAGLARHALRHAGAVAARHARRRDLVAPSPPPPPPRRECGACGRAFSDAANLSRHRREVHGARRGRACGACARRFSRAEHLRAHERHAHGGDALLCERCGARSASAAALRSHRRLHAAPRHACACGARFRRAAELRAHASVHVGARPHECACGRAFRLRAQLTLHARRRAHAHCAPREGGAISDPSQASLDKTEYDSMNESDLTENLVFDPRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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