Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754922.1:11897072-11900282[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0046 0.3 12.1 1.9 3 23 161 181 160 181 0.97

2 15 0.0024 0.16 13.0 0.5 5 23 198 216 194 216 0.91

3 15 9.9e-06 0.00064 20.5 0.6 1 23 222 244 222 245 0.95

4 15 0.00064 0.041 14.8 4.3 1 22 251 272 251 276 0.93

5 15 0.0061 0.4 11.7 2.3 1 23 283 305 283 305 0.97

6 15 2.8e-05 0.0018 19.1 1.4 3 23 313 334 311 334 0.96

7 15 1.7e-05 0.0011 19.8 4.3 1 23 340 362 340 362 0.98

8 15 0.0067 0.43 11.6 2.1 1 23 368 390 368 390 0.95

9 15 2e-05 0.0013 19.6 3.9 1 23 404 426 404 426 0.98

10 15 6.6e-07 4.3e-05 24.2 3.9 1 23 432 454 432 454 0.97

11 15 0.0014 0.088 13.8 1.6 1 23 460 482 460 482 0.97

12 15 0.024 1.6 9.8 4.8 1 23 488 511 488 511 0.97

13 15 1.2e-07 7.5e-06 26.6 0.9 1 23 517 539 517 539 0.97

14 15 5.7e-06 0.00037 21.3 1.0 1 23 545 567 545 567 0.98

15 15 0.004 0.26 12.3 1.2 1 21 573 593 573 594 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0046	0.3	12.1	1.9	3	23	161	181	160	181	0.97
2	15	0.0024	0.16	13.0	0.5	5	23	198	216	194	216	0.91
3	15	9.9e-06	0.00064	20.5	0.6	1	23	222	244	222	245	0.95
4	15	0.00064	0.041	14.8	4.3	1	22	251	272	251	276	0.93
5	15	0.0061	0.4	11.7	2.3	1	23	283	305	283	305	0.97
6	15	2.8e-05	0.0018	19.1	1.4	3	23	313	334	311	334	0.96
7	15	1.7e-05	0.0011	19.8	4.3	1	23	340	362	340	362	0.98
8	15	0.0067	0.43	11.6	2.1	1	23	368	390	368	390	0.95
9	15	2e-05	0.0013	19.6	3.9	1	23	404	426	404	426	0.98
10	15	6.6e-07	4.3e-05	24.2	3.9	1	23	432	454	432	454	0.97
11	15	0.0014	0.088	13.8	1.6	1	23	460	482	460	482	0.97
12	15	0.024	1.6	9.8	4.8	1	23	488	511	488	511	0.97
13	15	1.2e-07	7.5e-06	26.6	0.9	1	23	517	539	517	539	0.97
14	15	5.7e-06	0.00037	21.3	1.0	1	23	545	567	545	567	0.98
15	15	0.004	0.26	12.3	1.2	1	21	573	593	573	594	0.93

Sequence Information

Coding Sequence: atgtCTACTTCGGTGTGCCGCGTTTGCCTCTGCAGCGGAGTGCGTATGCTTGGTATTGAAGAGATTCACCTTTCGGAGCTATACGAGAAACTCACGAGCTCCAAGataaCCGGCAATGGGTGGCCACACACCCTCTGCTACATCTGTTCATCACAGCTGCAGCGTTGTGGCAGGTTTGCAGACACAGCACACAAGGCTGAAAGGTTCCTCAAAGATCTCCTGCAAAATGGCATGGAGGTGACCTGTGAGACAGTTGCTGCTCTTAAGATAGGAATTGCACAGGACTTTTCTTTAACCACTTTAAGATCAACCTCTTTCAATGGATACTCAATAGATGGCAGCACTCAGATGTTAGGTGTAGTGAAAGAAGAAAAAACTTCAGAAGAATCACCTGAACATAAGAGAAGCTTGTCTGAAGATGAttttcctactaaaattaaagaAGAGAGCATGAACAACACACCCACAGTGAGCAATTGTTGTGATGTATGCTTTGTAACGTGTACAACACCTGAGGAACTAGTCACCCATCTGAGAATTCATAAGACAAAGAACtcaatatgtaaaataaaagaagaaacaATATGTATCATATGCAATAAAAACTTCTCTGACAACAAATCACTAAAACTACATGAAAGTGTCCATACTGGGGCCAAACCTTTTGTCTGCAACCAATGTGGTGAAGCATTTAGACTCAAACAAAGTTTACAAAACCATATAATTGTACACCATACAAGAGAAAGGAGGTTTGTTTGTGATGTGTGTAATAAATCGTTTTTTCACAAAAAAGGATTAACTGCACATAAGCAGACTCCGAAATGCCACAGTCCCACTTACAAGCCATACGCCTGCAGTAAATGTGACTGTAGTTTTATGGAGCTTGACACCCTAAAGCAACACAAGAGTATCCATATTGGGGAACGAAGGTATGGCTGCAACCGGTGTGATAAAAAGTTTACAGAAAACAGGTACCTCACTAGGCACATCAGACAAGTACATTGTACACAAACTTACTATGCCTGCCACAGATGCAgtaagaaatttaaaaaattaagttctctaaaaatacacatgaaggttcatacaaaagaacaaTTGCATGCATGCAAACTATGCGGTCTAAAGTTCTTATACAGTTCCTCTTTAAAGAGACATGCCCAGCAACATGCATCTGGCCAAGCAGTCACCCGATCTGATGAGTGGCCATACTGCTGTGATCGCTGTAGTAAGAAATTCAAGTCACGAGCTGGTCTTAAAGCACACCTCAGGACACACACTGGAGAGCAGCCATTCTGTTGCAATACTTGCGGCAAGAAATTCAACCAAAAAGGTAACTTGCAATTGCACATGAAAATCCACTTCGGAGAGAAATTGTTTGCTTGTGAAATATGCGGGAAAACGTTCCTTTTAAAATGTCAGCTCAAAATTCACTATCAAGTTCACTCTGACGACAAACCTTACGCGTGCAATAGATGCGAGATGAGGTTTACTTTTAAATGCGCTTACAAACAGCATTTAAAAAGGCTCCACACTGAAGTTAAAGCGTTTGCATGCAGCAAGTGCGGAAAGTCTTTTGATCAAGAGTCCAACCTATCAAGCCATATAAGACGACATgcagcagaaagaatatactCCTGCGAAAAGTGCTCTAAAAAATACATTACAGCAGACAAGTTGAAACGACACATTGCAACCCACTCCGACAAAACCCCCCATGTATGCAACACATGCAATAAGGCTTTCAAAATATTGAGGTACCTGCAACAACACAAGATGTCTGCTAGATGTCGAGCCAACGCGGCCAGTGCTGTCACTGTTGACCAAAGTGGAAATCAACAGCCATCTTTACCACATTAA
Protein Sequence: MSTSVCRVCLCSGVRMLGIEEIHLSELYEKLTSSKITGNGWPHTLCYICSSQLQRCGRFADTAHKAERFLKDLLQNGMEVTCETVAALKIGIAQDFSLTTLRSTSFNGYSIDGSTQMLGVVKEEKTSEESPEHKRSLSEDDFPTKIKEESMNNTPTVSNCCDVCFVTCTTPEELVTHLRIHKTKNSICKIKEETICIICNKNFSDNKSLKLHESVHTGAKPFVCNQCGEAFRLKQSLQNHIIVHHTRERRFVCDVCNKSFFHKKGLTAHKQTPKCHSPTYKPYACSKCDCSFMELDTLKQHKSIHIGERRYGCNRCDKKFTENRYLTRHIRQVHCTQTYYACHRCSKKFKKLSSLKIHMKVHTKEQLHACKLCGLKFLYSSSLKRHAQQHASGQAVTRSDEWPYCCDRCSKKFKSRAGLKAHLRTHTGEQPFCCNTCGKKFNQKGNLQLHMKIHFGEKLFACEICGKTFLLKCQLKIHYQVHSDDKPYACNRCEMRFTFKCAYKQHLKRLHTEVKAFACSKCGKSFDQESNLSSHIRRHAAERIYSCEKCSKKYITADKLKRHIATHSDKTPHVCNTCNKAFKILRYLQQHKMSARCRANAASAVTVDQSGNQQPSLPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -