Prub021840.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754932.1:3996959-4002722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.26 17 6.6 2.6 1 21 69 89 69 90 0.97 2 20 0.51 33 5.7 0.7 3 23 119 139 118 139 0.95 3 20 0.0022 0.14 13.1 0.3 2 23 162 183 161 183 0.97 4 20 0.014 0.94 10.5 0.1 1 23 187 209 187 209 0.95 5 20 0.0054 0.35 11.9 0.1 1 23 214 237 214 237 0.90 6 20 0.028 1.8 9.7 3.8 1 23 243 266 243 266 0.96 7 20 0.00059 0.039 14.9 1.7 1 23 273 296 273 296 0.97 8 20 9.8e-07 6.4e-05 23.7 3.6 1 23 303 325 303 325 0.97 9 20 4.3e-06 0.00028 21.6 1.8 1 23 331 353 331 353 0.98 10 20 0.4 26 6.0 0.1 2 14 357 369 356 370 0.87 11 20 0.13 8.5 7.5 0.0 1 23 477 499 477 499 0.98 12 20 9.1 5.9e+02 1.7 0.1 3 23 523 546 521 546 0.78 13 20 0.0033 0.21 12.6 7.0 1 23 569 591 569 591 0.97 14 20 2.7e-06 0.00018 22.3 0.2 2 23 596 617 595 617 0.97 15 20 0.00061 0.04 14.9 0.5 1 22 625 646 625 649 0.91 16 20 0.00038 0.025 15.5 4.4 1 23 654 677 654 677 0.96 17 20 0.063 4.1 8.5 0.5 1 23 683 706 683 706 0.96 18 20 0.00065 0.042 14.8 4.0 1 20 712 731 712 734 0.95 19 20 5.6e-07 3.6e-05 24.4 4.2 1 23 740 762 740 762 0.99 20 20 0.00048 0.031 15.2 4.5 1 23 768 790 768 791 0.95
Sequence Information
- Coding Sequence
- ATGTCCTTGGTGGGCGgaagaCGTGGACAGATCGCCAACCAAACTTTAAAAGTTGAGGATGCCAATAACGTTTGTTTAGAAGTGAAACCTAAATCCAAGTACCAGCGGAGTGCCAGGGCCGAAGCACGCATCGCTATCAAGAAAAACGCTACATCCATCCTGCAGTGCTGGACGCTAAGTCCCTTCAGATGGAAAAAGAATAGGTTTAAGTGCGCTTATTGTGAAGATAACTTCACTGAGTGTAACTCACTTAGAGAGCACATCAGGCATTGCTCTACCCGACACAATATTAAGGACATTTACAACAAATTCAAGGAAATGCCTCTTATTAACGTGGATAGCACCGAAGCCATATGTTGCTTCTGCTCTACTTCCTTTATTGATGTCGCTCAAATGCGTGATCATGTTATACAACATGGGTTTGAATTCGACACCAACCACCCGGACGGGGTGCTTCCATTCTACTTGGACAAAGAATCTTGGAAATGCGTAATATGCGACGAGAAATTTAATAACTTCCTTAAACTTTATGAGCATATGAACGTTCACTACCAACATTATATATGTGCCACCTGCGGGAAAGGGTATATGACAGCACCACGGCTACGCAAGCATTCCGAGGTACACATCTCTGGCTCATTTCCGTGCTCTGACTGCGGCAGAGTATTCACAATGCGCGCTGCAAGAGATTCTCACAAAGCGACTGCACACACCAAAGGATCCAGATATGAATGCCCTCACTGTTATATCCGATTTGATAGCTACTATCACAGGATGACACACCTTAAGGAGGCTCATAGCGAAAAGGAAGTAGTTTATAGATGTGCTCATTGCGATATGTCGTTCAAGACGAGCGGGAAAAGAGCCAGTCATGTTCGTTCTGTTCACTTTCCACCGCAACATGACTTTAGTTGCTCGTATTGTGGTTGGCACTTTAAAACTAACTACGAACTAAAGAGGCACATGGTGAGACACACAGGCGAGAGAAATTTCCATTGTTACGTATGCGGCAAATCTTTCCCTAGAAATAGGGCCTTGGCAACCCATCTGAAGACTCATCAAGACTTGAATTGCAAGTGGTGTGGACTAGTGTTCAAGCAGAGAAATCAACCTTTAAAGGAGAATGTTAGCGAGCGCCAGATGCGCAGGCGTCGGCGCGCCAACAACGAGTTGCCGGAAGAATCTGAAGGACGAATCTCGAAGACTATGATGAGACGGAACGCCATTATGCTCCTGGAGTGTTCTACAGCGTGGGCTTTTCAAGCCAACGTCGTAGAACTGCGTCTCATTGTCAAATTTTCTTTTTTAGGATCCACCGACCGGACATTTAAATGGATACCGAAGCGAAAATTCCACGATCACAGAGACAATGCGGGCATTATTCTAGAGACTTCTAACGTTTGTCCATTTAGATGGCAGCGCGGTTTGTTTGTGTGTGCGTATTGTGCTCTAACCTTTGCAGAGTTTGGACCTTTAAGGGAACATGCCATGACGCATCTCAATAAAATTGAGGCTCTTCGATTCGTAGGTAAACAGATTCTCAAATGCGATATCACTGGTCTAAAATGTGAACTCTGTTTAGGAACTACAAGTATAAAAGACCTTAGTGAATTAGTTGAACATCTAAAGTCAGTTCACAACAAATCTATTGACGTTAACCTTGGATTAGGCATTTTTCCTTACCTGTTAATTACAAACGAGGACTACCACTGCGCGCACTGCactaaaacttttaaattcTTCACTAGtttgaataaacatataaacGACCACTACCCCAATTCAGTTTGCCCTCTCTGCGGTAAAGCATTCTCTGATAGCAATAAGATCACAGCTCATATGAAGACGCATGGAATTGGAGCCAAAGGGCAATACAAATGTTCAAAATGTGACGAAGTCTTTCCAAGCGCATACGATAGAAACAAGCACACGATATCAGCTAAGCACAACACAATGAGGTACAGATGCCCGCACTGCAACGAGAACTTTAAAAGCTACTCAAACAGATTGAAGCACTTAAAAGAATTTCACGATTCTAAAATAGAGTTTCCGTGTAGTTTGTGCTCGGCTGTCTTCAGAATGACCAACCAGAGGACAAAGCATATTCAGCAAGTCCACATTAAAGACAAAAGGTTCAGTTGCAGCCTCTGCCCTTACCAATTCGTCACATCGCATCAGCTACAGCGGCACATGATTTGTCATAACGGAGAAAGGAAGTACGAATGTCAAGTGTGTAAAAAATGCTACTCCAGGAAGTCGACTTTGAGAGAACACATGCGGATTCACAACAATGACAGAAGATTTGTCTGCATGTACTGTAATAATGCTTTTGTGCAAAAATGTAGTCTCAAAAGTCATATGAGGGCGCATCATCCGAACAGCGAACCGTTACCCGAAGAAAATAAACGTAGAAAAGATTAA
- Protein Sequence
- MSLVGGRRGQIANQTLKVEDANNVCLEVKPKSKYQRSARAEARIAIKKNATSILQCWTLSPFRWKKNRFKCAYCEDNFTECNSLREHIRHCSTRHNIKDIYNKFKEMPLINVDSTEAICCFCSTSFIDVAQMRDHVIQHGFEFDTNHPDGVLPFYLDKESWKCVICDEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCSDCGRVFTMRAARDSHKATAHTKGSRYECPHCYIRFDSYYHRMTHLKEAHSEKEVVYRCAHCDMSFKTSGKRASHVRSVHFPPQHDFSCSYCGWHFKTNYELKRHMVRHTGERNFHCYVCGKSFPRNRALATHLKTHQDLNCKWCGLVFKQRNQPLKENVSERQMRRRRRANNELPEESEGRISKTMMRRNAIMLLECSTAWAFQANVVELRLIVKFSFLGSTDRTFKWIPKRKFHDHRDNAGIILETSNVCPFRWQRGLFVCAYCALTFAEFGPLREHAMTHLNKIEALRFVGKQILKCDITGLKCELCLGTTSIKDLSELVEHLKSVHNKSIDVNLGLGIFPYLLITNEDYHCAHCTKTFKFFTSLNKHINDHYPNSVCPLCGKAFSDSNKITAHMKTHGIGAKGQYKCSKCDEVFPSAYDRNKHTISAKHNTMRYRCPHCNENFKSYSNRLKHLKEFHDSKIEFPCSLCSAVFRMTNQRTKHIQQVHIKDKRFSCSLCPYQFVTSHQLQRHMICHNGERKYECQVCKKCYSRKSTLREHMRIHNNDRRFVCMYCNNAFVQKCSLKSHMRAHHPNSEPLPEENKRRKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -