Prub020700.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- PRDM7_2
- Assembly
- GCA_963576535.1
- Location
- OY754930.1:3023250-3030583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 12 7.1 7.3 1 23 315 337 315 337 0.97 2 13 0.0022 0.15 13.1 1.6 1 23 343 366 343 366 0.94 3 13 5.5e-05 0.0036 18.2 0.7 1 23 375 397 375 397 0.96 4 13 1.3e-06 8.5e-05 23.3 0.3 1 23 406 428 406 428 0.98 5 13 1.3e-05 0.00082 20.2 0.8 1 23 434 456 434 456 0.98 6 13 6.4e-06 0.00042 21.1 0.9 1 23 462 484 462 484 0.98 7 13 1.3e-05 0.00082 20.2 0.8 1 23 490 512 490 512 0.98 8 13 1.3e-05 0.00082 20.2 0.8 1 23 518 540 518 540 0.98 9 13 8.8e-05 0.0057 17.5 0.4 1 23 546 568 546 568 0.98 10 13 1.3e-05 0.00082 20.2 0.8 1 23 574 596 574 596 0.98 11 13 8.8e-05 0.0057 17.5 0.4 1 23 602 624 602 624 0.98 12 13 1.5e-05 0.00095 20.0 3.9 1 23 630 652 630 652 0.98 13 13 7.7e-05 0.005 17.7 1.0 1 23 658 680 658 680 0.98
Sequence Information
- Coding Sequence
- atgAGCCAACGATGTCTGCGAAAGAAACCACGAATAAGCTACTACGAGCCTGAGGAGTTGAATTTGGACGAATATATTTATTGCGATAAGTGCGCTGATCTTGTATTCGAGTACTGCTCCATTCACGGACCCCTGCTTGTCATACCAGATGATAAGGTTTCAGCCAAAAAAAATGTCCCATCGTTTGTTCCACGAGCTGCACTGACTGTCCCCAATGTCTTCCTCCACCTGGCACCTTCCAGTATACCAGgaGCCGGCCTGGGTATGTTTTCGACGCTGACTCTTCCCAGTGGGGTGCGCTTTGGCCCTTACTTGGGCGAACGGACTGACGGCGTCGACTCTTACTACTGTTGGCAGATATACGACTCAAATCGCAAGCCTAGTTACTGCATCGACGCAGTAAACGCAGACAAGTCTAACTGGATGCGCTATGTGAACTGCGCTCGGCACTGGAGCGAACAGAACCTTGTCGCATTCCAGTACCAGGGACAAATTTACTATAGAACGACCAAAATAATTCCTCGGTTTACGGAGCTCCTGGTGTTTTACGGTAGCGAGTTCGCGAATGAACTGGACATAGATCTCGGGAAATATAACTCGCCGAAATACGCAAGAGCATACGGTGCGTCGAAACGCAAATTGAGCGATGATAATCCATTAACAATTCAAGAACAAGCAATACACAGCCCAGTGGCAATTTCAAAGGAATTCAATAACGACACTAAACATCTAAACAGTACGAATATTATAGACAAAATTCCTAAAGATGGACAATGGAAGGAAAATGTCACATCGATTTTAGTAGACGCTGTGACACAAGATCTGGATGATAGACACATCAAAGAGCCTGGTGCTAAGTTAGACCAAGAAAACTGTCCAATAAATAAAAGCACCGATTTCAAACCAAAATTCGAAACTAAAATCCAGCTTAAAGATATGTACCACTACTGTGACATATGTCATGTAAAATGCATCGCCAGATGTGATTTAGAAAAACATATGAGGTTACATGACGAAAGTCGGGTTCATGCTTGTGAAACCTGCTCCTACAGATTCAGTTCTCTTAAAGGATTAAAAAATCACAGGGCAAGTGTTCACGTAATGAAAAGCTCAAGCAATATTCATGCATGTGAAATATGTGACAAAatatttaatgatatcaataaATTAGGAAGACATTTGAGGACTCACATTGGACACAccggagaaaagccatatgctTGTGACATGTGTAATATGAAATTTGTTGATAATGGTGCATTAAAAAAGCACATACGAACTCACAccggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTGCTATTAGTAGTACATTGAAAAGCCATATGAGAactcacactggagaaaagccatatgctTGTGACACTTGTAATATGAAATTTGCTACTAGTTATGTATTAAAAAGGCACATACGAACTCACAccggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTGCTATTAGTAGTACATTGAAAAGCCATATGAGAactcacactggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTGCTATTAGTAGTACATTGAAAAGCCATATGAGAactcacactggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTGCTACTAGTTATGTATTAAAAGGGCACATACGAACTCACAccggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTGCTATTAGTAGTACATTGAAAAGCCATATGAGAACTCACACTGGAAAAAAGCCATATGCTTGTGACACGTGTAATATGAAATTTGCTACTAGTTATGTATTAAAAGGGCACATACGAACTCACAccggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTATTAATAGTAGTCATTTGAAAACGCATAAACGAactcacactggagaaaagccatatgctTGTGACACGTGTAATATGAAATTTGCAGCCAGTAATTCATTTAAAAGGCACATACGAACTCACACCGGAGAAAAGTCCTAA
- Protein Sequence
- MSQRCLRKKPRISYYEPEELNLDEYIYCDKCADLVFEYCSIHGPLLVIPDDKVSAKKNVPSFVPRAALTVPNVFLHLAPSSIPGAGLGMFSTLTLPSGVRFGPYLGERTDGVDSYYCWQIYDSNRKPSYCIDAVNADKSNWMRYVNCARHWSEQNLVAFQYQGQIYYRTTKIIPRFTELLVFYGSEFANELDIDLGKYNSPKYARAYGASKRKLSDDNPLTIQEQAIHSPVAISKEFNNDTKHLNSTNIIDKIPKDGQWKENVTSILVDAVTQDLDDRHIKEPGAKLDQENCPINKSTDFKPKFETKIQLKDMYHYCDICHVKCIARCDLEKHMRLHDESRVHACETCSYRFSSLKGLKNHRASVHVMKSSSNIHACEICDKIFNDINKLGRHLRTHIGHTGEKPYACDMCNMKFVDNGALKKHIRTHTGEKPYACDTCNMKFAISSTLKSHMRTHTGEKPYACDTCNMKFATSYVLKRHIRTHTGEKPYACDTCNMKFAISSTLKSHMRTHTGEKPYACDTCNMKFAISSTLKSHMRTHTGEKPYACDTCNMKFATSYVLKGHIRTHTGEKPYACDTCNMKFAISSTLKSHMRTHTGKKPYACDTCNMKFATSYVLKGHIRTHTGEKPYACDTCNMKFINSSHLKTHKRTHTGEKPYACDTCNMKFAASNSFKRHIRTHTGEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -