Basic Information

Insect: Plemyria rubiginata
Gene Symbol: -
Assembly: GCA_963576535.1
Location: OY754933.1:5216252-5221045[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.9e-06 0.00038 21.2 1.3 1 23 159 181 159 181 0.98

2 13 0.15 9.5 7.4 1.2 1 23 187 210 187 210 0.90

3 13 5.7e-05 0.0037 18.1 0.1 1 23 216 238 216 238 0.98

4 13 3.1e-06 0.0002 22.1 1.8 1 23 243 265 243 265 0.99

5 13 1.9e-05 0.0012 19.6 3.1 1 23 271 293 271 293 0.99

6 13 6.5e-07 4.2e-05 24.2 1.0 1 23 299 322 299 322 0.95

7 13 6.1e-05 0.004 18.0 4.5 1 23 328 350 328 350 0.97

8 13 1.3e-05 0.00083 20.1 0.7 1 23 356 378 356 378 0.98

9 13 0.00024 0.015 16.2 1.9 1 23 384 406 384 406 0.99

10 13 1e-07 6.7e-06 26.7 1.1 1 23 412 434 412 434 0.98

11 13 1e-05 0.00068 20.4 0.9 1 23 440 462 440 462 0.98

12 13 0.33 21 6.3 3.1 1 23 468 487 468 487 0.94

13 13 9.5e-07 6.1e-05 23.7 0.7 1 23 493 515 493 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.9e-06	0.00038	21.2	1.3	1	23	159	181	159	181	0.98
2	13	0.15	9.5	7.4	1.2	1	23	187	210	187	210	0.90
3	13	5.7e-05	0.0037	18.1	0.1	1	23	216	238	216	238	0.98
4	13	3.1e-06	0.0002	22.1	1.8	1	23	243	265	243	265	0.99
5	13	1.9e-05	0.0012	19.6	3.1	1	23	271	293	271	293	0.99
6	13	6.5e-07	4.2e-05	24.2	1.0	1	23	299	322	299	322	0.95
7	13	6.1e-05	0.004	18.0	4.5	1	23	328	350	328	350	0.97
8	13	1.3e-05	0.00083	20.1	0.7	1	23	356	378	356	378	0.98
9	13	0.00024	0.015	16.2	1.9	1	23	384	406	384	406	0.99
10	13	1e-07	6.7e-06	26.7	1.1	1	23	412	434	412	434	0.98
11	13	1e-05	0.00068	20.4	0.9	1	23	440	462	440	462	0.98
12	13	0.33	21	6.3	3.1	1	23	468	487	468	487	0.94
13	13	9.5e-07	6.1e-05	23.7	0.7	1	23	493	515	493	515	0.98

Sequence Information

Coding Sequence: ATGTCCAAAATATGGGAGACTGGCGCCTTGTGCCGCTGTTGCCATTTGAAGGGCCATTTCAAGAGTTTAAGAGTCCTAGACGCTTATGAAGGAAGAGAGGATACTTACTCAGCGATTCTTCATGAGACTCTCGATATTGTCCTAGAGCCATCTGTAGCGGACCCCTCAGCATTCACAATCTGTGGAGTCTGTGAGAACAGGCTTCGGGATGCGACACTCTTCAAGAGGCAGGTGCTGAAGTGTGAAGAACTATTTAAACATCTGATCTATGGACTTAAagaAGACAGCAGCTATGAAAATGAGGCCAAATTGGAGTTTAACAATGTAACTGAAGATGATACACCTGATGTTGATGACCAGCCTCTTTGCTCGCTAAAGTCATCAAAACAAGCACCTCTAGAACAGAATGATGACTGGACGCCGGACAGTGATGaAGAAGATTCTAAACCACTCCGCAAGACAAAGACTAAGAAATTCAACTGCAGCTTTTGCGACAAACAATTCTCGTACAACGGCTCACTTGAAATGCACATGAAGATCCACACAGGAGAGAAATCTTACATCTGTGTCCTATGCACGGACACTTTCCAAACTAACAAGGATCTAACAAAGCACTTCGGCTCAAAACACAGTGATGGAACAAAATACCCCTGCACTATATGTCCGAAGGTTTTAGACAAGCCTAAACTACTAAAAAACCACCTAAACATACACTTCGAGAAGAAATTCAAGTGCACAGAGTGCGAAAAGGAGTTTCAACGCAAGAAAGGCTTAAAAGAACACATGAAGGTACACACGGGGGAAAGAAAATACCAGTGCGCAGTCTGCCAGAAGTCATTCGGTCACAATCAAACGTTAAAATCACATATGTACACCCACACAGGCGAAAAACCTTATATATGTGACATCTGTGGCCGCAGGTTCCCACAACGGACACACTTAAAAAGACATATTTACATAATTCATAATCAAATCAAAGCACACTCGTGTAGTGTGTGCAATAAACACTTTTCTAGCAAAAGTTACTTGGCTATTCATGAAAGACAGCATACCGGGGAGAAGCCTTTCTCTTGTGAAGTTTGTAACAAAGACTTCACAGCTTACACAACTTTAAAAGTTCATATGAGGGTGCATACTGGATTAAAACCGTATTCTTGCAGTTTCTGTGAACGCCAATTTGCCCAAATGGCCTCTTTTAAGCTGCATCAGCGCACACACACCGGTGAAAAGCCTTACAGCTGCAAAGTATGCAGAAAATCTTTCTCGGACAACGGGTATCTTAAGATCCATATGCGAGTTCACTCCGGAGAGAAGCCATTCTCATGTGAAGTTTGCAAACGTAGTTTTCGCGAAACAGGCCAGCTAAAAAGGCACGCGAGGATCCACACAGGAGTGAAGGCATATACTTGCAAAGTTTGCAATAAGCAAATAGGTAATCTGTCGAAACATATGAAGATTCATAGCGAAGAGAGAGCCTTTAACTGTGCAGTTTGTAATAAGCAGTTTTCTTTTAGCGGTAATCTGAAAATTCATATGCGAGTTCATGCAGATTTGAAGCAATCTTGCGATGCTTGTAGTGAATTTAGTCAAAATTCAGAACCTAAACGACACAGATGCGCGCCATCTAGCGAGCTTCATAAGTACTAA
Protein Sequence: MSKIWETGALCRCCHLKGHFKSLRVLDAYEGREDTYSAILHETLDIVLEPSVADPSAFTICGVCENRLRDATLFKRQVLKCEELFKHLIYGLKEDSSYENEAKLEFNNVTEDDTPDVDDQPLCSLKSSKQAPLEQNDDWTPDSDEEDSKPLRKTKTKKFNCSFCDKQFSYNGSLEMHMKIHTGEKSYICVLCTDTFQTNKDLTKHFGSKHSDGTKYPCTICPKVLDKPKLLKNHLNIHFEKKFKCTECEKEFQRKKGLKEHMKVHTGERKYQCAVCQKSFGHNQTLKSHMYTHTGEKPYICDICGRRFPQRTHLKRHIYIIHNQIKAHSCSVCNKHFSSKSYLAIHERQHTGEKPFSCEVCNKDFTAYTTLKVHMRVHTGLKPYSCSFCERQFAQMASFKLHQRTHTGEKPYSCKVCRKSFSDNGYLKIHMRVHSGEKPFSCEVCKRSFRETGQLKRHARIHTGVKAYTCKVCNKQIGNLSKHMKIHSEERAFNCAVCNKQFSFSGNLKIHMRVHADLKQSCDACSEFSQNSEPKRHRCAPSSELHKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -