Prub021851.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- sfc2
- Assembly
- GCA_963576535.1
- Location
- OY754932.1:4054103-4065759[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0025 0.16 12.9 0.4 1 23 324 346 324 346 0.98 2 27 0.24 15 6.7 0.5 2 23 371 393 370 393 0.96 3 27 0.0089 0.58 11.2 0.4 3 23 417 438 415 438 0.91 4 27 9e-05 0.0058 17.5 0.3 1 23 442 464 442 464 0.98 5 27 0.035 2.3 9.4 3.2 1 23 469 492 469 492 0.97 6 27 0.14 8.8 7.5 1.5 2 23 500 522 500 522 0.93 7 27 3.1e-05 0.002 18.9 0.9 1 23 529 552 529 552 0.97 8 27 0.00017 0.011 16.6 0.8 1 23 558 582 558 582 0.99 9 27 0.00095 0.062 14.3 1.8 1 23 588 610 588 610 0.97 10 27 0.00041 0.027 15.4 1.6 1 23 616 639 616 639 0.97 11 27 0.0028 0.18 12.8 1.3 1 23 694 716 694 716 0.97 12 27 0.12 7.7 7.7 0.1 2 23 741 763 740 763 0.96 13 27 0.0012 0.08 13.9 0.4 2 23 786 808 785 808 0.94 14 27 0.0001 0.0068 17.3 0.3 1 23 812 834 812 834 0.97 15 27 0.92 60 4.9 1.6 1 23 839 862 839 862 0.92 16 27 2.3 1.5e+02 3.6 0.2 2 23 870 892 870 892 0.77 17 27 3.8e-05 0.0025 18.7 1.1 1 23 899 922 899 922 0.98 18 27 6.7e-05 0.0044 17.9 0.0 1 23 928 952 928 952 0.99 19 27 0.4 26 6.0 3.9 1 23 988 1012 988 1012 0.96 20 27 2.2 1.4e+02 3.7 3.9 3 23 1040 1061 1038 1061 0.96 21 27 0.007 0.45 11.5 0.5 2 23 1080 1101 1080 1101 0.98 22 27 0.0018 0.12 13.4 0.1 1 23 1105 1127 1105 1127 0.98 23 27 0.06 3.9 8.6 0.5 1 23 1132 1157 1132 1157 0.88 24 27 0.55 36 5.6 3.2 2 23 1164 1186 1163 1186 0.90 25 27 0.026 1.7 9.7 0.5 2 23 1194 1216 1193 1216 0.96 26 27 0.017 1.1 10.3 4.6 2 23 1221 1242 1218 1242 0.88 27 27 0.00064 0.042 14.8 4.0 1 23 1248 1271 1248 1271 0.97
Sequence Information
- Coding Sequence
- ATGGCAGTAgataaattagaattagagacTTACTTTGGGAAATGCAAATGCTGCCCTACATATGGTTATCTAAGAACCATGTGGGAGAAGCATGCAGTAGAATCAACATGTCAACATGAAATCTACGGACAGATGCTCACAGAATGTTTCTGTATCGAGtgGACCATACAGAACTCAGAGGAGGACGACCTGATCTGTGAAGACTGCATATGGAAGCTGAGAGAGGCCTTCACATTCAAGAATCAGGTGTTACAGTGTCAGAAAGAAGTCGTAAACAtgcAAGTGAATAAAGAATTGGAAATAAAATCGGACGCAGATAAAGGCTATGACATCGAATACCTTGAGGAGGAATACTTGGAAGAAGACAATAATAATGAGGATTCGTACCAAGAGAATGGGGAAGAGAGAGAGGATGGAGAGGAGAGGGAGAACGAAAACGAAAAGCCAAGCTCATCTTTTGTCTATGAGGAAGACAATGAAGAAGATGATActgatgaaaatgaaaacacagAGGATGAAGACGAAGAAGACGCTTCTCCCGACGGCCCAACTCCTCGGAAGCGGAAACCACGACCGCGACAATCGAGCACCGACGATGATGACAGCGACACGGACGCTCCCAAACCGAAGTGGCCCAAGAAGCTGCCGAAGCAGGAGCGCTGGAAGACTTACAGGCAGTACTCGGACAAGGCGATGGTGGAAGCCGTGCAAGCGGTGGTCACGAAGACCATGAGCCAGAAAGATGCGTCCGAAAAGTTCAAGGTCCCACGGAAGACTTTGAGTGCAAAAGTTGTCTCGTataaaaATGCTGAGAGCTTAGAAAGACCGCTAAATCCAAGGCCAGACTCCCCAATCGAGGTACAGGACTATGAAGACTATATGCTTATCATAAAGAAGCATAGAGATAACATACATTCCGTTCTCACTTACTCAAACGCTACGCCCATCAGAGGTTACTGGGGCGTAGGCTATGTCTGCGCTTTCTGCCCAGAACAGTTCCCAGAACCAGCATCACTGAAGAAGCACACTCACAGCCATGCAGACTACCCAAACCTATTCATAGTCCCCCATGTCAGAAGTCACGTAGCGAGACTCGACGTCACAGGCCTAAAATGCCGCATCTGCTCCACGAATCTCGTAAACCTGCAAAGCCTCATGTATCATCTCCAGAGAGAGCATGATAAACCGATGCATTTCGACATTAACAACCATATGATGCCGTTCAAATTCGATACAGTGGAGCTAGAGTGCATCGAATGCGACAAAAACTTCAAGAACTTCAAACTCCTGTCTGAACACATGGCTAGTATGCATTACAGGAATTATGTGTGTCGGAAGTGCGATAGGGGTTTCGTGAATCGAGTGAACTTAGTCGCGCATAAGGATACTCACAAATTGGGGGAGTATAACTGCGATTTCTGCGGAAAGCTGTTCAACACGCGTCGTAAGAAGACAACCCATGAAAGAATGACACATACGCTTCTAACGAAATACGAAAAGTGTGGATACTGCAATAAGAGATTTCAGAATATAGCTCAAAAGAACAACCATGAACTTAGGACTCACAAGAAGCAACCAACTGACTTTAAGTGTGTTGAATGTGATAGAAGCTACGCTCGTCAGCGTTCTCTACGAGACCATGTGAAAAGGGAGCATCTATTACAACGCCCCTACAAGTGTACTAAAATAGGGTGTGAGAAGTCCTTCTACTTAAATAGGACGTTACAAGCACATATATTAACACATGCTGAAGGTAGGCATTTCGCCTGCCATTTGTGCTCCAAAGCATACAGGTCCCTCAAATCGCTTAAGGGTCATATGTATGTACACACAGATAAGAAAGAGTTCAAGTGCTCAAGGTGCTATAAAAGTTATGTGATTGAGGATAATTTGATACGAcatatgaaaaataaacatcGATACCTAACAACAAGTTTAGGTGATAAGGACTCGGGTCAGTCAGACATGAGCAGAAACAGCCTTCCTGACAGCATGACGATAACGAAACATCGGGAGAATATCCACTCCATCCTCGAATCCTCCAACGCAACGCCTCTACGCGGTTTCTGGGGCGTAGGCTACGCTTGCTACTACTGCAAAGCGAGATTCCGTTACCCATTATCCCTGAAACAGCACACAGAAACTCACCTAAACGACGCAAGCAAATACACTGTCAGGAACATGCGTACGCATTCCGTCAAACTTGATATAACTAACCTCCAATGCAACATTTGCGACGCGAGAATCGAGGAGTTAGAACAACTGATGGTACATCTCAAATCGAAACATGATAAACCAATTCATTTCGACATCAAAAGTCATATAGTGCCGTATAACTTTAAGGCTAAACAGCTTAGATGCGTCAAGTGTGGGACAGAGTTTGAGAATTTCAAAAATCTTTCCGAGCACATGAACGATGTTCATTTTCGGAATTACGAGTGTGATAAATGCGGGCGGGGATTCGTGAATCGTGGGTCGTTGGTGACTCACAGCTCGCGTCACCGTTTCGGCTCATTTTCTTGCACGTTCTGCCTCAAAGTCTTTGCCACGCGATTGAGAAGAACGGAGCACGAGCGGGTCTTTCATATAATGAAGAGTAAGACGAGGAAATGCGGGTACTGTGATGAGAAATTCGTAGGCATCACCCAGAAGGTGAACCACGAAGTAACAATCCATAATGTACCCCAGCCAGAGTATAAATGCAATGCTTGCAGTAAAGCATTCACAACTAAGAGAAACTTACAAGGTCACGTGAAGCGTGTGCACCTTTTGCACCGCCCATACAAGTGTACCGTAGATGAGTGTGGCAAGGCATTCCCTATAAAAGTCGAGTTGCAAGCTCACCTTATCACACATGATAACGAGCCTCTGTTCCCAACACCGAGCAGCAATCTAGTGAACGAGCTGAAGACACTTCTCAGCTTTGTAGATGCGACGCCATTCCGCTCGTGGGGCAACCAATACTGCTGCTTCTACTGCCCCGAACGTTACACGTTCCCTCACGTCGACGCACTAAAGCAACATACCCAAACCCACAACTACGAGACCGAGTTGAAACAAGCCATGCTACCAGTCTTCAACAACGAGACAGTCAAGTTGGACCTAACGCAGGTCCATTGCACAGTATGCTCGACCCCCCTACACAACTGGAAGAACACGGTTAAGCATCTACGAAAAAAACACTCCGCCAACTTCCGAGATTGTAATAAAATGATCCCATTCGAGCTGAACGAGGCTAAGTGCGTTATTTGCGATAAAGATTTCGCATCGTTTATGAAGTTGGATTACCACATGAACTCACACTTTAAGAACTACGTTTGTGGTCATTGCGGGGCGCCGTTTGCATCGACCATTCGCTTGAACGCGCACGAGAAAACGCATGATACTGGACGGTACAGATGCAACTACCCACCTTGCAATAAAGTCTTCAATCTCGAGAAATATCTTAAGAGGCATGTATCTCTCGTGCATAAAGGCGAGCTTAAAGTGAAATGCAGGTATTGCAATGAGAAGTTCAAAGGCGAAAGTCAGCGGCACGCGCATATAGTGGAGTGTCACAATGAGTATGTGGATAATATAACTTGTGAGCTATGCGGCATGGCGTTTAACTGGTCGAAGACTTTCATGGATCATATGAAGCGGAAACATAATTTTCGGTGTGCTTGCAGAAAGTGCGGAAAGTGCTTTAAAAATGACATTCTACTTAAAGAGCATGAAGCGAAGCATACGGGTGTTATGAAGTATAAATGCCTCTTTTGCTCCAAGTTTTATTATTCGAAGAGTAGTTTGGAGCGCCACCTGAAGTATATGCATTTAGACAGTAGCTTTACTATCATAGAGACAGGTTAA
- Protein Sequence
- MAVDKLELETYFGKCKCCPTYGYLRTMWEKHAVESTCQHEIYGQMLTECFCIEWTIQNSEEDDLICEDCIWKLREAFTFKNQVLQCQKEVVNMQVNKELEIKSDADKGYDIEYLEEEYLEEDNNNEDSYQENGEEREDGEERENENEKPSSSFVYEEDNEEDDTDENENTEDEDEEDASPDGPTPRKRKPRPRQSSTDDDDSDTDAPKPKWPKKLPKQERWKTYRQYSDKAMVEAVQAVVTKTMSQKDASEKFKVPRKTLSAKVVSYKNAESLERPLNPRPDSPIEVQDYEDYMLIIKKHRDNIHSVLTYSNATPIRGYWGVGYVCAFCPEQFPEPASLKKHTHSHADYPNLFIVPHVRSHVARLDVTGLKCRICSTNLVNLQSLMYHLQREHDKPMHFDINNHMMPFKFDTVELECIECDKNFKNFKLLSEHMASMHYRNYVCRKCDRGFVNRVNLVAHKDTHKLGEYNCDFCGKLFNTRRKKTTHERMTHTLLTKYEKCGYCNKRFQNIAQKNNHELRTHKKQPTDFKCVECDRSYARQRSLRDHVKREHLLQRPYKCTKIGCEKSFYLNRTLQAHILTHAEGRHFACHLCSKAYRSLKSLKGHMYVHTDKKEFKCSRCYKSYVIEDNLIRHMKNKHRYLTTSLGDKDSGQSDMSRNSLPDSMTITKHRENIHSILESSNATPLRGFWGVGYACYYCKARFRYPLSLKQHTETHLNDASKYTVRNMRTHSVKLDITNLQCNICDARIEELEQLMVHLKSKHDKPIHFDIKSHIVPYNFKAKQLRCVKCGTEFENFKNLSEHMNDVHFRNYECDKCGRGFVNRGSLVTHSSRHRFGSFSCTFCLKVFATRLRRTEHERVFHIMKSKTRKCGYCDEKFVGITQKVNHEVTIHNVPQPEYKCNACSKAFTTKRNLQGHVKRVHLLHRPYKCTVDECGKAFPIKVELQAHLITHDNEPLFPTPSSNLVNELKTLLSFVDATPFRSWGNQYCCFYCPERYTFPHVDALKQHTQTHNYETELKQAMLPVFNNETVKLDLTQVHCTVCSTPLHNWKNTVKHLRKKHSANFRDCNKMIPFELNEAKCVICDKDFASFMKLDYHMNSHFKNYVCGHCGAPFASTIRLNAHEKTHDTGRYRCNYPPCNKVFNLEKYLKRHVSLVHKGELKVKCRYCNEKFKGESQRHAHIVECHNEYVDNITCELCGMAFNWSKTFMDHMKRKHNFRCACRKCGKCFKNDILLKEHEAKHTGVMKYKCLFCSKFYYSKSSLERHLKYMHLDSSFTIIETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219716;
- 90% Identity
- iTF_01219716;
- 80% Identity
- iTF_01219716;