Prub021844.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
-
Assembly
GCA_963576535.1
Location
OY754932.1:4020549-4029502[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.039 2.6 9.2 1.1 1 23 43 65 43 65 0.90
2 36 0.072 4.7 8.4 0.4 1 23 156 178 156 178 0.94
3 36 0.099 6.4 7.9 0.3 2 23 207 229 206 229 0.91
4 36 0.00013 0.0085 17.0 2.1 1 23 251 273 251 273 0.99
5 36 0.0086 0.56 11.3 0.1 1 23 277 299 277 299 0.95
6 36 0.36 23 6.1 0.2 2 23 305 327 304 327 0.90
7 36 1.1 71 4.6 3.5 1 23 333 356 333 356 0.94
8 36 3.9e-05 0.0025 18.6 0.2 1 23 363 386 363 386 0.96
9 36 0.0096 0.62 11.1 0.9 1 23 392 414 392 414 0.97
10 36 0.14 9.3 7.4 0.3 1 23 507 529 507 529 0.90
11 36 1.8 1.1e+02 4.0 0.1 2 23 558 580 557 580 0.90
12 36 0.00012 0.0078 17.1 1.7 1 23 602 624 602 624 0.99
13 36 0.24 16 6.7 0.1 1 23 628 650 628 650 0.95
14 36 6.8 4.4e+02 2.1 1.0 1 19 655 673 655 678 0.72
15 36 0.0043 0.28 12.2 2.5 1 23 684 707 684 707 0.96
16 36 8.2e-05 0.0053 17.6 0.2 1 23 714 737 714 737 0.98
17 36 0.00048 0.031 15.2 1.7 1 23 743 765 743 765 0.95
18 36 7e-07 4.5e-05 24.1 1.2 1 23 771 793 771 793 0.99
19 36 0.00014 0.0091 16.9 6.7 1 23 799 821 799 822 0.95
20 36 0.26 17 6.6 0.2 1 23 935 957 935 957 0.91
21 36 4.9 3.2e+02 2.6 0.2 2 23 986 1008 985 1008 0.90
22 36 0.0059 0.38 11.8 0.3 1 23 1030 1052 1030 1052 0.99
23 36 0.06 3.9 8.6 0.1 1 23 1056 1078 1056 1078 0.96
24 36 0.021 1.4 10.0 0.4 1 23 1083 1106 1083 1106 0.91
25 36 0.034 2.2 9.4 0.8 2 23 1113 1135 1113 1135 0.95
26 36 1.7e-05 0.0011 19.8 0.5 1 23 1142 1165 1142 1165 0.98
27 36 0.00032 0.021 15.7 4.2 1 23 1171 1194 1171 1194 0.96
28 36 0.24 16 6.7 0.5 1 23 1315 1337 1315 1337 0.97
29 36 0.78 51 5.1 2.4 2 23 1362 1384 1361 1384 0.94
30 36 2 1.3e+02 3.8 0.1 1 23 1409 1431 1409 1431 0.92
31 36 0.055 3.6 8.7 0.1 1 23 1435 1457 1435 1457 0.98
32 36 0.035 2.3 9.3 1.0 1 23 1462 1485 1462 1485 0.94
33 36 0.016 1.1 10.4 0.4 2 23 1492 1514 1492 1514 0.93
34 36 0.0045 0.29 12.2 6.1 1 23 1521 1544 1521 1544 0.97
35 36 0.00042 0.027 15.4 2.4 2 23 1551 1572 1550 1572 0.96
36 36 7.3e-05 0.0048 17.8 0.6 1 23 1578 1600 1578 1600 0.99

Sequence Information

Coding Sequence
ATGCAGGCTCGCCCGATCCAAACCAAATATGATGCTAAAACCGAAGCCTCTCAGCAATCTGTCTTGATGCTTATAGCATGTTCAAGAATATGCCCCTTCAAGTGGATGCCTTTAAAAACCGGTAAATTCTTCTGCATATATTGCGATCAGAAATTCACAGATCCTGCCAAATTACGAGAACACAATACTAAACACGAAGATGCAACACTCGAGGAGATAGAAAGTGCCATAGCATATTATGTTCCCAAAATCTTACTGCAAGTAGACATCACTGACTTAAGCTGTATCGATGAGACTTCGAACAAGACTCGAGAAGATATCGAGAAGAATACTcacaataatacaaaaactaAGACGCAGCATGACCAAACTAAATACGACACTGAAATCAAAGCCAGACAGCAACGCGTTTTAATACTTTTAGAGTGCTCCAGAATATGTCCCTTCAAATGGAAAAAGAATTCGTATATTTGCATTTACTGCAATCAAAGATACGCAGATCCCGCGAAATTAAGAGAGCACAACAAGAAACACGAAGATATCAAACATGTAGAGATAAAAAGAGCCATCGCTAAAATTAATACAACAGAATTATTGAAAGCCGATGTCACTGACGTCAGTTGCAAACTTTGCGATACTTCGATAAATAGACTAGATTATCTCATAACTCATTTATTTGAAAAGCATAAAAAGAAAATCGAGCTGACTGCTGATGTAGGAATCATCCCTTTTAGAGTTACGTTAGAAGATTACCGATGCACAATATGTGATAAGAAGTACGCAGAATATATTACGCTTAAACATCATATGAATATCCATTATCCAAATTTTATTTGCGAGCAATGTGGATCGAGCTTTGTTACAGCCGGTAGACTGAGGGTGCACGCGTTCTCCCACGAAACTGGTTCCATCCCGTGTGATGCTTGTGATAAAGTTTTTCGCTCTGACAATTCTAAGAGGCTGCACTACGAAAGTGTTCATATGAAGCTTAAAAGACACAGCTGCCCGCAATGTCCCGAGACGTTCCTGCACTACTATCAAAGATTAAAGCATATATCGTCGAGCCACGGAATGAAAGTGAAAGAGTTCAAGTGCGATTTGTGTCCAAAAGTCTTCGTATCTAAAGGAAAACTTTACGCCCATGTGCGGGGCACGCATTTGAAGGAAAAGCGGTATGCCTGCGATGTTTGTGAAGTAAAGTTCTTTACTACAACGTTATTAAAGAATCACAAACTTACGCACACGGAAGAGAAGAAATATCTGTGCAGCTGGCATAGAAATTGGCCGCTACTCGGCGTGTTAGGGCAAGGGCTTTCTGTGAGACTTGGGAAATATCATGCCTATGTTTTGAAGGGTATCGAAGAGCCTCCGAACAAGACTCCAGATGACGTAATAGAACGAAACTACAGTAAAATAAAGACACCGCAGACCCAAACAGAAATCAGAGCCAGGCAGCAACGCATTCTAGCACTTCTCGAGTGTTCCAGGATAAGCCCTTTCAAATGGATGAAGAATTTGTTTTTCTGTATATACTGTGACCAACGATACGCAGATCCTGCGAAACTAAGAGAACACTACACTGAACATGAAGATATCAAACTTGCAGAGATAAAGCTAGTCTTAACTAGGCTAAAGAAACACGAGTTATTAAAAGCAGATATTACTAACGTTAGTTGTAAGCTTTGTAACACTAAAATAGATAGATTAGATGGTCTTGTAACGCACTTATTTGAAATACATCAGAAAAATATTGATCCCAATTCTGATATCGGAATACTTCCTTTCAAAGTTAACTTAGAAGATTATAAATGTGCCATTTGTGATGAAAAATATTCTGAATATAAGTCTCTCAATCATCATATGAACGTTCACTACCAAAATTTTATTTGCGCGTCATGTGGGTCAGGATTTATTACTCCAGAAAGATTAAGAGTGCACTCCTTCACTCACGAAACTGGATCTTTTCCATGTGGCGCTTGTGATAAAGTGTTTCGCTGCAATAACGCGAAGAATGAACATTACGCCAACGTACATATGAAGGTGAAACGTCACAGGTGTCCGCAGTGCCCTGAGACATTCCGGAACTACTTCCAAAGATCAAAGCATATATCTTCGGTTCACGGGATGAAACTTAAGGAATTTAAGTGTGACTTGTGCCCGAAAGTTTTCACAGTCAGTGGGAAGTTGGGTGTGCACGTAAGGACTACACATTTAAAGGAGAAGCGTCACGCTTGTGACTTATGCGAGTGGAAGTTCTATTCTAAATCTGAGTTGAAATATCACATGGTGAAACACAGTGGCGAGAGAAAGTACCAGTGTAACGTTTGTAAGAAAGCTTACGCTAGGAAGTACACGTTGCGTGAGCATATGAGGATACACGAGAATGATAGGAGATTTGTGTGCACTATTTGTGGGAAAACGTTCGTGCAAAGCTGCAGTTTGAAACACCACTCTAAGATCCACCATCCATGCCCTGCGCCTAAGAATAATCCATTCAACGGCttaagaATCGAACCATCACCTGTTGTGTCGAAGAAAACGAAGATAATTCCACTCTTTCAAGTGGATTACGATCGCAGTCTCTGCAAACCCCTGGGAACTATCGCAGACTTTGGTAAACTTAACATAAAAACTCTTGTTTCTGATACTCCGAAATCCGACGTCACTCGAAACGATGCAACATCGAAAGCGCAGAAGATCCGGCCCAAACATTCTGACACTAAAGTCAAAGCCAGGCAGCAACGCATTATTGCACTTCTAGAGTGTTCCAAGATATGTCCTTTCAAATGGACGAAGAACTTGTTTTTCTGCATATACTGTGATCAACAATACGCAGATCCTGCTAAACTAAGAGAACATTACTCTGAGCATGCAAATATCACAGTTCTAAAGATAAAACAAGCATTAACTAGACTTAACAAACATGAGCTACTAAAAGCAGATATAACAAATGTTAGTTGTAAACTTTGCAATACCCCGATTGATAAATTGAATGATCTCATTActcatttatttgaaaaacataaaaagaaaattgtTCCTGATTCTGACATCGGAATACTTCCTTTTAAAGTCAATCTAGGCGATTATAAATGCGCTATTTGTGATGGGAAATACGGAGAATATAAATCTCTCAGGCAACATATGAACGTTCACTTTCCAAATTTTATTTGCGCTGTTTGTGGATCGGGTTTTATAACATCAGCAAGATTGAAAGTACACTCCTTCACCCACGAAACAGGATCTTATACATGTGACGCGTGCGACAAGGTGTTCCGCTCTAACAATGCGAAAAACGAACACTTCGCCAGGGTCCATATGAAAGTGAAACGTAACAGATGTGGGCTGTGCCCGGAGACATTCCGAAACTACTTCCAAAGGTCGAAGCATATATCTTCGGTTCACGGGACAAAGTTGAAAGAATATAAGTGCGACCTGTGCCCGAAAGTTTTCACTTTCAGTGGACAATTAGGCACGCACGTACGCACTACGCATCTGAAGGAAAAGAGATACTCCTGCGATGTGTGCGAAAGGAGGTTCTATTCCAAATCAGAGTTGAAGCATCATTTTAAGGTAAAACACAGAAACGACCAAATACCTGTCGCGACGAAGGAAACAAAGATAGTGCCACTGTTTCAAGTGGATTACGATCGCAGCCTGTGCAAGCCCTTGGGAACTATCACAGACTTCAGTAAACTGAGGAGGAAAGCACAACGTTTTTCCGAAACTCTTGCATACGAAAGCTCCCGGAGTCCATCACCTGCGCCTCACGAAAGAACGCCGTCGCCGTATCAGCCCATAGAAGATGACGCAAACACAAATCCTCCAGCGAAATACTTATTAAAAGAACCCACTGCAAGGAAGATATCAGACTGTCGACAGAATGCCTTGATAGTATTCGAGAATTCAACTGCGTATCCCTTTGTTCTCTCAAACAACAGTTTCAGATGCTTCGTATGCACTCAATCATATTTAGACGTTCCCAACTTAAAGATGCACATGTCCGAACATCCTTTCGCGCATATCAAACGGTTAGTGAACAACCGAAAGGAGAACGTCCTTAAAGTTGACGTCAGCGACCTATGCTGCAAGCTCTGTTCGCTGCCGCTCAAGGACTTGGTCACTTTAAAACATCATCTTAAAGAAGTTCACGATAAAGCTATAGACACAGAATTGCAAGATAACCTTATACCTTACGATTTGACTATTCACAGCAGCGAGGGCTACCAGTGCGTGGTCTGTGAGCAGAATTTCATTAAAGTCCGTATTCTGGTGATCCACATGAGCGAGCACTTTAGCAACTACAGCTGCGAAGTATGCGGCTCGGGGTCCATGACGTTACGCCTCCTGAAGAAGCATTTAGAAGTACACGAGACTGGCAACTTCCCCTGCGATCGTTGCGAGAAAGTGTTTAGCACGACGCACAAAAGAGCTTTACACGTGAGGGGAGTTCATTTGAAGCAATATCCTCGACGTTGTCCTATGTGTCCGGAGCGCTTCAACTCCAACTACAAACGGACCATCCACCTCCAGGATATCCACAATCAGTCCACGAGAGTGCATAAATGTAAGACCTGCGGTAGAGGTTTCCATCTGAAGTATCATTTGATAAGCCACGTGCGTTCCGTCCATCTGCAGGAGAGAAATCAGCAGTGTGATGTGTGCCTCCAGAGGTTCTGCAACAAGGAGTCGCTGAAGAGGCATATGGTGATACATACTGGCGAGAAGAATTATAAGTGTGAGGTTTGCGGGATGGCATTCTTGAGGAGAAAGAATCTGAAAGATCATTTGCGATTACACGATATTCACTGA
Protein Sequence
MQARPIQTKYDAKTEASQQSVLMLIACSRICPFKWMPLKTGKFFCIYCDQKFTDPAKLREHNTKHEDATLEEIESAIAYYVPKILLQVDITDLSCIDETSNKTREDIEKNTHNNTKTKTQHDQTKYDTEIKARQQRVLILLECSRICPFKWKKNSYICIYCNQRYADPAKLREHNKKHEDIKHVEIKRAIAKINTTELLKADVTDVSCKLCDTSINRLDYLITHLFEKHKKKIELTADVGIIPFRVTLEDYRCTICDKKYAEYITLKHHMNIHYPNFICEQCGSSFVTAGRLRVHAFSHETGSIPCDACDKVFRSDNSKRLHYESVHMKLKRHSCPQCPETFLHYYQRLKHISSSHGMKVKEFKCDLCPKVFVSKGKLYAHVRGTHLKEKRYACDVCEVKFFTTTLLKNHKLTHTEEKKYLCSWHRNWPLLGVLGQGLSVRLGKYHAYVLKGIEEPPNKTPDDVIERNYSKIKTPQTQTEIRARQQRILALLECSRISPFKWMKNLFFCIYCDQRYADPAKLREHYTEHEDIKLAEIKLVLTRLKKHELLKADITNVSCKLCNTKIDRLDGLVTHLFEIHQKNIDPNSDIGILPFKVNLEDYKCAICDEKYSEYKSLNHHMNVHYQNFICASCGSGFITPERLRVHSFTHETGSFPCGACDKVFRCNNAKNEHYANVHMKVKRHRCPQCPETFRNYFQRSKHISSVHGMKLKEFKCDLCPKVFTVSGKLGVHVRTTHLKEKRHACDLCEWKFYSKSELKYHMVKHSGERKYQCNVCKKAYARKYTLREHMRIHENDRRFVCTICGKTFVQSCSLKHHSKIHHPCPAPKNNPFNGLRIEPSPVVSKKTKIIPLFQVDYDRSLCKPLGTIADFGKLNIKTLVSDTPKSDVTRNDATSKAQKIRPKHSDTKVKARQQRIIALLECSKICPFKWTKNLFFCIYCDQQYADPAKLREHYSEHANITVLKIKQALTRLNKHELLKADITNVSCKLCNTPIDKLNDLITHLFEKHKKKIVPDSDIGILPFKVNLGDYKCAICDGKYGEYKSLRQHMNVHFPNFICAVCGSGFITSARLKVHSFTHETGSYTCDACDKVFRSNNAKNEHFARVHMKVKRNRCGLCPETFRNYFQRSKHISSVHGTKLKEYKCDLCPKVFTFSGQLGTHVRTTHLKEKRYSCDVCERRFYSKSELKHHFKVKHRNDQIPVATKETKIVPLFQVDYDRSLCKPLGTITDFSKLRRKAQRFSETLAYESSRSPSPAPHERTPSPYQPIEDDANTNPPAKYLLKEPTARKISDCRQNALIVFENSTAYPFVLSNNSFRCFVCTQSYLDVPNLKMHMSEHPFAHIKRLVNNRKENVLKVDVSDLCCKLCSLPLKDLVTLKHHLKEVHDKAIDTELQDNLIPYDLTIHSSEGYQCVVCEQNFIKVRILVIHMSEHFSNYSCEVCGSGSMTLRLLKKHLEVHETGNFPCDRCEKVFSTTHKRALHVRGVHLKQYPRRCPMCPERFNSNYKRTIHLQDIHNQSTRVHKCKTCGRGFHLKYHLISHVRSVHLQERNQQCDVCLQRFCNKESLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHDIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-