Prub007878.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754912.1:12126745-12132727[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-10 6.7e-07 29.4 0.0 3 40 85 121 83 125 0.88 2 2 6 8.4e+03 -2.9 0.0 14 22 205 212 199 212 0.72
Sequence Information
- Coding Sequence
- ATGGCTACTGAGTACGCAGAGACCACCGGAGCACCTTTTGTTGCGGCAGAGTACTCGCACAAATCGCGAGATGTCGAGATACGCGGCACACCGACGCGGGCCTTAATGGCCGTCCTCGGACGAGCCGAGCTGAAGATGGACGTGCTAAGAGAGCGAGAAGTAAAAGACAACCTGGAGAGACAACTCGTGGACGAGCAAAAAATGAGAGGAACTCGAAGTAGGACTAAAAGTCTGAAGGTGAAATGGGGCCAAGATGATTTAAATAGGGCATTCAAACATGTCGAAGAGGGGACCCCGATAAGAGAGGCAGCTCGGAAAAATGGCATCCCATTTTCTACCCTCCAAGAAAGGCTGAAGAAGAAGAACTGTGAATTACCAACTATGGGAAGAAGTCCAGTGTTCACGAAAGAACAAGAAGCAGAAATGGCAGACCAGGTAAAGTTCCTTGGTAACATATTTTATGGCTGCACTTCAATTCAAATAAGGAAGATGGCTTATGAATACGCTGTTAAAAATTGCATAAAGCACAACTTTAATGAAGTCCTTAAAATGGCTGGAAAAGATTGGCTTAGAGGGTTCATGAAAAGAAATAAGCTGTCTAATCGAAAAGCTGAAGGCACGAGTTTGAATAGAGCTACAGCTTTTAACAAAAATGAAGTTGGCATATTTTTCAAGCTGCTTGAAGACTTAATGGAGAAATATAAGTTTCTACCAAGAAACATTTATAATGTTGATGAAACTGGCATCTCCTCAGTGCAAGACCCGGGAAAAGTTGTTACTGAGAAAGAGACATTCACCGGCATTGGAAAGCGATGGTCCGCGTGGAGCTATATACCGGTGCTCGAAGAATGGATGGATAAACGAAGATTTATTTGTTGA
- Protein Sequence
- MATEYAETTGAPFVAAEYSHKSRDVEIRGTPTRALMAVLGRAELKMDVLREREVKDNLERQLVDEQKMRGTRSRTKSLKVKWGQDDLNRAFKHVEEGTPIREAARKNGIPFSTLQERLKKKNCELPTMGRSPVFTKEQEAEMADQVKFLGNIFYGCTSIQIRKMAYEYAVKNCIKHNFNEVLKMAGKDWLRGFMKRNKLSNRKAEGTSLNRATAFNKNEVGIFFKLLEDLMEKYKFLPRNIYNVDETGISSVQDPGKVVTEKETFTGIGKRWSAWSYIPVLEEWMDKRRFIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219787;
- 90% Identity
- iTF_01219787;
- 80% Identity
- iTF_01219787;