Prub011833.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754917.1:12188913-12193311[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-06 0.0024 18.0 0.0 4 39 192 229 189 233 0.84 2 4 2e-12 2.8e-09 37.0 0.4 2 39 245 282 244 285 0.93 3 4 5.1e-16 7.2e-13 48.5 0.1 2 45 300 344 299 344 0.96 4 4 4.8e-19 6.7e-16 58.2 0.0 1 44 351 395 351 396 0.96
Sequence Information
- Coding Sequence
- atgcCTGGCTCCGGAACTGCTGCCGTAAAATATGAGCCTCCGTCAGACGATGAAGATGGTAGTCCCCAGTTACCTGATGTCTTCCATAACACGtttcaatCAGAATTCCATTCTCTCGCTTCTCTAAAAGTAGAAGCGGGTTACAACAATGATGAGGATATGCCGACGTTGCTTCAACACTTACAGAGTCCCGAAGGTCTGGAAGAACTGGCCCCACTGGCACCTGCCGGGCCCGCAGCCACCCCGGTGTGTGTGAAACAGGAGCGTGTGGAGACCCTCGCCCTCAATCTGGAGACCTTGGAACCTGCACCACATGCATCGGGCTCGTTGTTGGAGAGACACATGGTGGTATTGGGAACATCTGAAGTGCCTGACTCCGCTAACTTTACGCCGCTACACTTGTCTGTCAAAGATGAACACTCTTCTGAAGGTGGTAGGTGCACCTTCTTTCTTTCAATTCTACAATTCAGCAAAGCAGATTATGATACTAGGATAGAACAGCAGCCGAGCAGTGCTGATGAGCTAAGCGACTCGTGCGGGCTGCGCGCGGGACCCAAGGCGTGGTCGCAGCAGGACATGGAGAGCGCGCTCGACGCACTCCGGACCCACAACATGAGCTTGACTAAACATCCATCATCGACGTACGGCATTCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCGCCGCCAAGTCATGGAGCGAGGCCGACCTGCGCGCCGCTCTGCACGCCCTCAGAGCCGGCGCCATCTCCGCCAACAAAGCCAGCAAGGCTTATGGTATCCCCAGCAGTACGCTGTACAAGATAGCTCGTCGCGAGGGCATCCGGCTGGCTGCGCCCTTCAACGCAGCGCCGGTGGCGTGGCGGCGCAATGATCTGCAGCGAGCCCTGGCGGCCATCCGGTCCGGCTGCGCCTCGGTGCAGAGGGCGGCCTCACAGTACGGGATACCTACTGGCACTCTTTACGGACGCTGCAAACGTGAAGGTATAGAGCTGTCTCGGTCGAACCCCACGCCGTGGTCCGAAGACGCCATGGGAGAGGCACTGGAAGCTGTCAGGGTTGGCCAGATGTCGATAAACCAGGCAGCCATTCACTACAACTTGCCGTATTCCTCACTTTACGGCCGATTCAAGCGGTGCAAGTATCAGGTTCAGCCAATGCCGCACCCAGAAGTACAGAACCCTCCTGAAATGGTCCACAGCCCACAAGAGCTGAACTACTACCATCAAATGGGCATGTACCCTGAGCAGGCGCATTCCTCCGTCCACCCTCCCTTCGCTTTCCCCCCTTTCGAGCTCATGCAGGACTCCTCACACAACTTGCAGGAGCCTCACTCTCAGCCGATGTACTACAACCAGAGCTTTAGCAGCATAGCGACCAGCTGA
- Protein Sequence
- MPGSGTAAVKYEPPSDDEDGSPQLPDVFHNTFQSEFHSLASLKVEAGYNNDEDMPTLLQHLQSPEGLEELAPLAPAGPAATPVCVKQERVETLALNLETLEPAPHASGSLLERHMVVLGTSEVPDSANFTPLHLSVKDEHSSEGGRCTFFLSILQFSKADYDTRIEQQPSSADELSDSCGLRAGPKAWSQQDMESALDALRTHNMSLTKHPSSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRNDLQRALAAIRSGCASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQPMPHPEVQNPPEMVHSPQELNYYHQMGMYPEQAHSSVHPPFAFPPFELMQDSSHNLQEPHSQPMYYNQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -